-
1
-
-
0029001186
-
Incision activity of human apurinic endonuclease (Ape) at abasic site analogs in DNA
-
Wilson DMIII, Takeshita M, Grollman AP, Demple B. Incision activity of human apurinic endonuclease (Ape) at abasic site analogs in DNA. J Biol Chem 1995;270:16002-16007.
-
(1995)
J Biol Chem
, vol.270
, pp. 16002-16007
-
-
Wilson III, D.M.1
Takeshita, M.2
Grollman, A.P.3
Demple, B.4
-
2
-
-
0026004662
-
Two distinct human DNA diesterases that hydrolyze 3(- bloking deoxyribose fragments from oxidized DNA
-
Chen DS, Herman T, Demple B. Two distinct human DNA diesterases that hydrolyze 3(- bloking deoxyribose fragments from oxidized DNA. Nucleic Acids Res 1991;19:5907-5914.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 5907-5914
-
-
Chen, D.S.1
Herman, T.2
Demple, B.3
-
3
-
-
0029010778
-
Site-directed mutagenesis of the human DNA repair enzyme HAP1: Identification of residues important for AP endonuclease and RNase H activity
-
Barzilay G, Walker LJ, Robson CN, Hickson ID. Site-directed mutagenesis of the human DNA repair enzyme HAP1: identification of residues important for AP endonuclease and RNase H activity. Nucleic Acids Res 1995;23:1544-1550.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1544-1550
-
-
Barzilay, G.1
Walker, L.J.2
Robson, C.N.3
Hickson, I.D.4
-
4
-
-
0019876798
-
Purification and characterization of an apurinic/apyridiminic endonuclease from HeLa cells
-
Kane CM, Linn S. Purification and characterization of an apurinic/apyridiminic endonuclease from HeLa cells. J Biol Chem 1981;256:3405-3414.
-
(1981)
J Biol Chem
, vol.256
, pp. 3405-3414
-
-
Kane, C.M.1
Linn, S.2
-
5
-
-
0028342951
-
Repair of oxidative damage to DNA: Enzymology and biology
-
Demple B, Harrison L. Repair of oxidative damage to DNA: enzymology and biology. Annu Rev Biochem 1994;63:915-948.
-
(1994)
Annu Rev Biochem
, vol.63
, pp. 915-948
-
-
Demple, B.1
Harrison, L.2
-
6
-
-
0035837587
-
The major human abasic endonuclease: Formation, consequences and repair of abasic lesions in DNA
-
Wilson DMIII, Barsky D. The major human abasic endonuclease: formation, consequences and repair of abasic lesions in DNA. Mutat Res 2001;485:283-307.
-
(2001)
Mutat Res
, vol.485
, pp. 283-307
-
-
Wilson III, D.M.1
Barsky, D.2
-
7
-
-
0026583944
-
Identification and characterization of Ref-1, a nuclear protein that facilitates AP-1 DNA-binding activity
-
Xanthoudakis S, Curran T. Identification and characterization of Ref-1, a nuclear protein that facilitates AP-1 DNA-binding activity. EMBO J 1992;11:653-656.
-
(1992)
EMBO J
, vol.11
, pp. 653-656
-
-
Xanthoudakis, S.1
Curran, T.2
-
8
-
-
0030900605
-
Identification of redox/ repair protein Ref-1 as a potent activator of p53
-
Jayaraman L, Murthy KG, Zhu C, Curran T, Xanthoudakis S, Prives C. Identification of redox/ repair protein Ref-1 as a potent activator of p53. Genes Dev 1997;11:558-576.
-
(1997)
Genes Dev
, vol.11
, pp. 558-576
-
-
Jayaraman, L.1
Murthy, K.G.2
Zhu, C.3
Curran, T.4
Xanthoudakis, S.5
Prives, C.6
-
9
-
-
0026714672
-
Redox activation of Fos-Jun DNA binding activity is mediated by a DNA repair enzyme
-
Xanthoudakis S, Miao G, Wang F, Pan YC, Curran T. Redox activation of Fos-Jun DNA binding activity is mediated by a DNA repair enzyme. EMBO J 1992;11:3323-3335.
-
(1992)
EMBO J
, vol.11
, pp. 3323-3335
-
-
Xanthoudakis, S.1
Miao, G.2
Wang, F.3
Pan, Y.C.4
Curran, T.5
-
10
-
-
67651149733
-
Identification of apurinic/ apyrimidinic endonuclease APE1 as the endoribonuclease that cleaves c-myc mRNA
-
Barnes T, Kim WC, Mantha AK, Kim SE, Izumi T, Mitra S, Lee CH. Identification of apurinic/ apyrimidinic endonuclease APE1 as the endoribonuclease that cleaves c-myc mRNA. Nucleic Acids Res 2009;37:3946-3958.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3946-3958
-
-
Barnes, T.1
Kim, W.C.2
Mantha, A.K.3
Kim, S.E.4
Izumi, T.5
Mitra, S.6
Lee, C.H.7
-
11
-
-
0028212864
-
The half-life of c-myc mRNA in growing and serum-stimulated cells: Influence of the coding and 3' untranslated regions and role of ribosome translocation
-
Herrick DJ, Ross J. The half-life of c-myc mRNA in growing and serum-stimulated cells: influence of the coding and 3' untranslated regions and role of ribosome translocation. Mol Cell Biol 1994;14:2119-2128.
-
(1994)
Mol Cell Biol
, vol.14
, pp. 2119-2128
-
-
Herrick, D.J.1
Ross, J.2
-
12
-
-
0030974044
-
Coding elements in exons 2 and 3 target c-myc mRNA downregulation during myogenic differentiation
-
Yielding NM, Lee WMF. Coding elements in exons 2 and 3 target c-myc mRNA downregulation during myogenic differentiation. Mol Cell Biol 1997;17:2698-2707.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 2698-2707
-
-
Yielding, N.M.1
Lee, W.M.F.2
-
13
-
-
0026507321
-
Control of c-myc mRNA half-life in vitro by a protein capable of binding to a coding region determinant
-
Bernstein PL, Herrick DJ, Prokipcak RD, Ross J. Control of c-myc mRNA half-life in vitro by a protein capable of binding to a coding region determinant. Genes Dev. 1992;6:642-654.
-
(1992)
Genes Dev
, vol.6
, pp. 642-654
-
-
Bernstein, P.L.1
Herrick, D.J.2
Prokipcak, R.D.3
Ross, J.4
-
14
-
-
0027317748
-
The 5' and 3' non-coding sequences of the c-myc gene, required in vitro for its post-transcriptional regulation, are indispensable in vivo
-
Morello D, Lavenu A, Pournin S, Babinet C. The 5' and 3' non-coding sequences of the c-myc gene, required in vitro for its post-transcriptional regulation, are indispensable in vivo. Oncogene 1991;8;1921-1929.
-
(1991)
Oncogene
, vol.8
, pp. 1921-1929
-
-
Morello, D.1
Lavenu, A.2
Pournin, S.3
Babinet, C.4
-
15
-
-
0004136246
-
-
(3rd ed.), CSHL Press, Cold Spring Harbor, New York
-
Sambrook J, Russell DW. Molecular Cloning - A Laboratory Manual (3rd ed.), CSHL Press, Cold Spring Harbor, New York, 2001.
-
(2001)
Molecular Cloning - a Laboratory Manual
-
-
Sambrook, J.1
Russell, D.W.2
-
16
-
-
0038823524
-
The genome sequence of the SARS-associated coronavirus
-
Marra M, Jones SJ, Astell CR, Holt RA, Brooks-Wilson A, Butterfield YS, Khattra J, Asano JK, Barber SA, Chan SY, Cloutier A, Coughlin SM, Freeman D, Girn N, Griffith OL, Leach SR, Mayo M, McDonald H, Montgomery SB, Pandoh PK, Petrescu AS, Robertson AG Schein JE, Siddiqui A, Smailus DE, Stott JM, Yang GS, Plummer F, Andonov A, Artsob H, Bastien N, Bernard K, Booth TF, Bowness D, Czub M, Drebot M, Fernando L, Flick R, Garbutt M, Gray M, Grolla A, Jones S, Feldmann H, Meyers A, Kabani A, Li Y, Normand S, Stroher U, Tipples GA, Tyler S, Vogrig R, Ward D, Watson B, Brunham RC, Krajden M, Petric M, Skowronski DM, Upton C, Roper RL. The genome sequence of the SARS-associated coronavirus. Science 2003;300:1399-1404.
-
(2003)
Science
, vol.300
, pp. 1399-1404
-
-
Marra, M.1
Jones, S.J.2
Astell, C.R.3
Holt, R.A.4
Brooks-Wilson, A.5
Butterfield, Y.S.6
Khattra, J.7
Asano, J.K.8
Barber, S.A.9
Chan, S.Y.10
Cloutier, A.11
Coughlin, S.M.12
Freeman, D.13
Girn, N.14
Griffith, O.L.15
Leach, S.R.16
Mayo, M.17
McDonald, H.18
Montgomery, S.B.19
Pandoh, P.K.20
Petrescu, A.S.21
Robertson, A.G.22
Schein, J.E.23
Siddiqui, A.24
Smailus, D.E.25
Stott, J.M.26
Yang, G.S.27
Plummer, F.28
Andonov, A.29
Artsob, H.30
Bastien, N.31
Bernard, K.32
Booth, T.F.33
Bowness, D.34
Czub, M.35
Drebot, M.36
Fernando, L.37
Flick, R.38
Garbutt, M.39
Gray, M.40
Grolla, A.41
Jones, S.42
Feldmann, H.43
Meyers, A.44
Kabani, A.45
Li, Y.46
Normand, S.47
Stroher, U.48
Tipples, G.A.49
Tyler, S.50
Vogrig, R.51
Ward, D.52
Watson, B.53
Brunham, R.C.54
Krajden, M.55
Petric, M.56
Skowronski, D.M.57
Upton, C.58
Roper, R.L.59
more..
-
17
-
-
33646544417
-
Purification and characterization of a novel mammalian endoribonuclease
-
Bergstrom K, Urquhart JC, Tafech A, Doyle E, Lee CH. Purification and characterization of a novel mammalian endoribonuclease. J Cell Biochem 2006;98:519-537.
-
(2006)
J Cell Biochem
, vol.98
, pp. 519-537
-
-
Bergstrom, K.1
Urquhart, J.C.2
Tafech, A.3
Doyle, E.4
Lee, C.H.5
-
18
-
-
0023665268
-
Probing the structure of RNAs in solution
-
Ehresmann C, Baudin F, Mougel M, Romby P, Ebel JP, Ehresmann B. Probing the structure of RNAs in solution. Nucleic Acids Res 1987;15:9109-9128.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 9109-9128
-
-
Ehresmann, C.1
Baudin, F.2
Mougel, M.3
Romby, P.4
Ebel, J.P.5
Ehresmann, B.6
-
19
-
-
0035815108
-
Two divalent metal ions in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1: Implications for the catalytic mechanism
-
Beernink PT, Segelke BW, Hadi MZ, Erzberger JP, Wilson DM III, Rupp B. Two divalent metal ions in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1: implications for the catalytic mechanism. J Mol Biol 2001;307:1023-1034.
-
(2001)
J Mol Biol
, vol.307
, pp. 1023-1034
-
-
Beernink, P.T.1
Segelke, B.W.2
Hadi, M.Z.3
Erzberger, J.P.4
Wilson III, D.M.5
Rupp, B.6
-
20
-
-
0033538343
-
The role of Mg2+ and specific amino acid residues in the catalytic reaction of the major human abasic endonuclease: New insights from EDTA-resistant incision of acyclic abasic site analogs and site-directed mutagenesis
-
Erzberger JP, Wilson DMIII. The role of Mg2+ and specific amino acid residues in the catalytic reaction of the major human abasic endonuclease: new insights from EDTA-resistant incision of acyclic abasic site analogs and site-directed mutagenesis. J Mol Biol 1999;290:447-457.
-
(1999)
J Mol Biol
, vol.290
, pp. 447-457
-
-
Erzberger, J.P.1
Wilson III, D.M.2
-
21
-
-
0032515067
-
Rapid dissociation of human apurinic endonuclease (Ape1) from incised DNA induced by magnesium
-
Masuda Y, Bennett RAO, Demple B. Rapid dissociation of human apurinic endonuclease (Ape1) from incised DNA induced by magnesium. J Biol Chem 1998;273:30360-30365.
-
(1998)
J Biol Chem
, vol.273
, pp. 30360-30365
-
-
Masuda, Y.1
Bennett, R.A.O.2
Demple, B.3
-
22
-
-
34249905486
-
A 'moving metal mechanism for substrate cleavage by the DNA repair endonuclease APE1
-
Oezguen N, Schein CH, Peddi SR, Power TD, Izumi T, Braun A. A 'moving metal mechanism for substrate cleavage by the DNA repair endonuclease APE1. Proteins 2007;68:313-323.
-
(2007)
Proteins
, vol.68
, pp. 313-323
-
-
Oezguen, N.1
Schein, C.H.2
Peddi, S.R.3
Power, T.D.4
Izumi, T.5
Braun, A.6
-
23
-
-
13544275676
-
Characterization of viral proteins encoded by the SARS-coronavirus genome
-
Tan YT, Lim SG, Hong W. Characterization of viral proteins encoded by the SARS-coronavirus genome. Antiviral Res 2005;65:69-78.
-
(2005)
Antiviral Res
, vol.65
, pp. 69-78
-
-
Tan, Y.T.1
Lim, S.G.2
Hong, W.3
-
24
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003;15:3406-3415.
-
(2003)
Nucleic Acids Res
, vol.15
, pp. 3406-3415
-
-
Zuker, M.1
-
25
-
-
33645729341
-
RNAbinding IMPs promote cell adhesion and invadopodia formation
-
Vikessa J, Hansen TVO, Jonson L, Borup R, Wewer UM, Christiansen J, Neilsen FC. RNAbinding IMPs promote cell adhesion and invadopodia formation. EMBO J 2006;25:1456-1468.
-
(2006)
EMBO J
, vol.25
, pp. 1456-1468
-
-
Vikessa, J.1
Hansen, T.V.O.2
Jonson, L.3
Borup, R.4
Wewer, U.M.5
Christiansen, J.6
Neilsen, F.C.7
-
26
-
-
55549123481
-
An equivalent metal ion in one- and two-metal-ion catalysis
-
Wang W. An equivalent metal ion in one- and two-metal-ion catalysis. Nat Struct Mol Biol 2008;15:1228-1231.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 1228-1231
-
-
Wang, W.1
-
27
-
-
11844253296
-
Ape1 abasic endonuclease activity is regulated by magnesium and potassium concentrations and is robust on alternative DNA structures
-
Wilson DMIII. Ape1 abasic endonuclease activity is regulated by magnesium and potassium concentrations and is robust on alternative DNA structures. J Mol Biol 2005;345:1003-1014.
-
(2005)
J Mol Biol
, vol.345
, pp. 1003-1014
-
-
Wilson III, D.M.1
-
28
-
-
33748788230
-
Metal inhibition of human N-methylpurine-DNA glycosylase activity in base excision repair
-
Wang P, Guliaev AB, Hang B. Metal inhibition of human N-methylpurine-DNA glycosylase activity in base excision repair. Toxicol Lett 2006;166:237-247.
-
(2006)
Toxicol Lett
, vol.166
, pp. 237-247
-
-
Wang, P.1
Guliaev, A.B.2
Hang, B.3
-
29
-
-
37049017336
-
Histidine residues in the IS3-IS4 loop are critical for nickel-sensitive inhibition of the Cav2.3 calcium channel
-
Kang HW, Moon HJ, Joo SH, Lee JH. Histidine residues in the IS3-IS4 loop are critical for nickel-sensitive inhibition of the Cav2.3 calcium channel. FEBS Lett 2007;581:5774-5780.
-
(2007)
FEBS Lett
, vol.581
, pp. 5774-5780
-
-
Kang, H.W.1
Moon, H.J.2
Joo, S.H.3
Lee, J.H.4
-
30
-
-
0141678840
-
Inhibitory effect of zinc on PEPT1-mediated transport of glycylsarcosine and beta-lactam antibiotics in human intestinal cell line Caco-2
-
Okamura M, Terada T, Katsura T, Saito H, Inui K. Inhibitory effect of zinc on PEPT1-mediated transport of glycylsarcosine and beta-lactam antibiotics in human intestinal cell line Caco-2. Pharm Res 2003;20:1389-1393.
-
(2003)
Pharm Res
, vol.20
, pp. 1389-1393
-
-
Okamura, M.1
Terada, T.2
Katsura, T.3
Saito, H.4
Inui, K.5
-
31
-
-
43049167396
-
Characterization of abasic endonuclease activity of human Ape1 on alternative substrates, as well as effects of ATP and sequence context on AP site incision
-
Berquist BR, McNeill DR, Wilson DMIII. Characterization of abasic endonuclease activity of human Ape1 on alternative substrates, as well as effects of ATP and sequence context on AP site incision. J Mol Biol 2008;379:17-27.
-
(2008)
J Mol Biol
, vol.379
, pp. 17-27
-
-
Berquist, B.R.1
McNeill, D.R.2
Wilson III, D.M.3
-
32
-
-
63049121360
-
APE1/Ref-1 interacts with NPM1 within nucleoli and plays a role in the rRNA quality control process
-
Vascotto C, Fantini D, Romanello M, Casaratto L, Deganuto M, Leonardi A, Radicella JP, Kelley MR, D'Ambrosio CD, Scaloni A, Quadrifoglio F, Tell G. APE1/Ref-1 interacts with NPM1 within nucleoli and plays a role in the rRNA quality control process. Mol Cell Biol 2009;29:1834-1854.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 1834-1854
-
-
Vascotto, C.1
Fantini, D.2
Romanello, M.3
Casaratto, L.4
Deganuto, M.5
Leonardi, A.6
Radicella, J.P.7
Kelley, M.R.8
D'ambrosio, C.D.9
Scaloni, A.10
Quadrifoglio, F.11
Tell, G.12
-
33
-
-
0034719372
-
DNAbound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination
-
Mol CD, Izumi T, Mitra S, J.A. Tainer JA. DNAbound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination. Nature 2000;403:451-456.
-
(2000)
Nature
, vol.403
, pp. 451-456
-
-
Mol, C.D.1
Izumi, T.2
Mitra, S.3
Tainer, J.A.4
-
35
-
-
0001005285
-
Ribonuclease A
-
Raines RT. Ribonuclease A. Chem Rev 1998;98:1045-1066.
-
(1998)
Chem Rev
, vol.98
, pp. 1045-1066
-
-
Raines, R.T.1
-
36
-
-
0013394889
-
Mechanisms of alternative premessenger RNA splicing
-
D.L. Black, Mechanisms of alternative premessenger RNA splicing, Annu Rev Biochem 72 (2003) 291-336.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
37
-
-
0036464533
-
Human AP-endonuclease 1 and hnRNP-L interact with a nCaRE-like repressor element in the AP-endonuclease 1 promoter
-
Kuninger DT, Izumi T, Papaconstantinou J, Mitra S. Human AP-endonuclease 1 and hnRNP-L interact with a nCaRE-like repressor element in the AP-endonuclease 1 promoter. Nucleic Acids Res 2002;30:823-829.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 823-829
-
-
Kuninger, D.T.1
Izumi, T.2
Papaconstantinou, J.3
Mitra, S.4
-
38
-
-
21244469877
-
Intronic CA-repeat and CA-rich elements: A new class of regulators of mammalian alternative splicing
-
Hui J, Hung LH, Heiner M, Schreiner S, Neumüller N, Reither G, Haas SA, Bindereif A. Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J 2005;24:1988-1998.
-
(2005)
EMBO J
, vol.24
, pp. 1988-1998
-
-
Hui, J.1
Hung, L.H.2
Heiner, M.3
Schreiner, S.4
Neumüller, N.5
Reither, G.6
Haas, S.A.7
Bindereif, A.8
-
39
-
-
38649129366
-
Diverse roles of hnRNP L in mammalian mRNA processing: A combined microarray and RNAi analysis
-
Hung LH, Heiner M, Hui J, Schreiner S, Benes V, Bindereif A. Diverse roles of hnRNP L in mammalian mRNA processing: a combined microarray and RNAi analysis. RNA 2008;14:284-296.
-
(2008)
RNA
, vol.14
, pp. 284-296
-
-
Hung, L.H.1
Heiner, M.2
Hui, J.3
Schreiner, S.4
Benes, V.5
Bindereif, A.6
-
40
-
-
62849102677
-
Auto- and crossregulation of the hnRNP L proteins by alternative splicing
-
Rossbach O, Hung LH, Schreiner S, Grishina I, Heiner M, Hui J, Bindereif A. Auto- and crossregulation of the hnRNP L proteins by alternative splicing. Mol Cell Biol 2009;29:1442-1451.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 1442-1451
-
-
Rossbach, O.1
Hung, L.H.2
Schreiner, S.3
Grishina, I.4
Heiner, M.5
Hui, J.6
Bindereif, A.7
-
41
-
-
57349170258
-
Regulatory role of human AP-endonuclease (APE1/ Ref-1) in YB-1-mediated activation of the multidrug resistance gene MDR1
-
Chattopadhyay R, Das S, Maiti AK, Boldogh I, Xie J, Hazra TK, Kohno K, Mitra S, Bhakat KK. Regulatory role of human AP-endonuclease (APE1/ Ref-1) in YB-1-mediated activation of the multidrug resistance gene MDR1. Mol Cell Biol 2008;28:7066-7080.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 7066-7080
-
-
Chattopadhyay, R.1
Das, S.2
Maiti, A.K.3
Boldogh, I.4
Xie, J.5
Hazra, T.K.6
Kohno, K.7
Mitra, S.8
Bhakat, K.K.9
-
42
-
-
0037705425
-
Splicing factor SRp30c interaction with Y-box protein-1 confers nuclear YB-1 shuttling and alternative splice site selection
-
Raffetseder U, Frye B, Rauen T, Jürchott K, Royer HD, Jansen PL, Mertens, PR. Splicing factor SRp30c interaction with Y-box protein-1 confers nuclear YB-1 shuttling and alternative splice site selection. J Biol Chem 2003;278:18241-18248.
-
(2003)
J Biol Chem
, vol.278
, pp. 18241-18248
-
-
Raffetseder, U.1
Frye, B.2
Rauen, T.3
Jürchott, K.4
Royer, H.D.5
Jansen, P.L.6
Mertens, P.R.7
|