-
1
-
-
5044222204
-
How did alternative splicing evolve?
-
Ast, G. 2004. How did alternative splicing evolve? Nat. Rev. Genet. 5: 773-782.
-
(2004)
Nat. Rev. Genet
, vol.5
, pp. 773-782
-
-
Ast, G.1
-
2
-
-
0037013963
-
p110, a novel human U6 snRNP protein and U4/U6 snRNP recycling factor
-
Bell, M., Schreiner, S., Damianov, A., Reddy, R., and Bindereif, A. 2002. p110, a novel human U6 snRNP protein and U4/U6 snRNP recycling factor. EMBO J. 21: 2724-2735.
-
(2002)
EMBO J
, vol.21
, pp. 2724-2735
-
-
Bell, M.1
Schreiner, S.2
Damianov, A.3
Reddy, R.4
Bindereif, A.5
-
3
-
-
0037219501
-
Getting to the heart of a splicing enhancer
-
Bilbao, D. and Valcarcel, J. 2003. Getting to the heart of a splicing enhancer. Nat. Struct. Biol. 10: 6-7.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 6-7
-
-
Bilbao, D.1
Valcarcel, J.2
-
4
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black, D.L. 2003. Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem. 72: 291-336.
-
(2003)
Annu. Rev. Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
5
-
-
22344458119
-
Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila
-
Blanchette, M., Green, R.E., Brenner, S.E., and Rio, D.C. 2005. Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila. Genes & Dev. 19: 1306-1314.
-
(2005)
Genes & Dev
, vol.19
, pp. 1306-1314
-
-
Blanchette, M.1
Green, R.E.2
Brenner, S.E.3
Rio, D.C.4
-
6
-
-
33745899048
-
Alternative splicing: New insights from global analyses
-
Blencowe, B.J. 2006. Alternative splicing: New insights from global analyses. Cell 126: 37-47.
-
(2006)
Cell
, vol.126
, pp. 37-47
-
-
Blencowe, B.J.1
-
7
-
-
33646777183
-
hnRNP L regulates differences in expression of mouse integrin α2β1
-
Cheli, Y. and Kunicki, T.J. 2006. hnRNP L regulates differences in expression of mouse integrin α2β1. Blood 107: 4391-4398.
-
(2006)
Blood
, vol.107
, pp. 4391-4398
-
-
Cheli, Y.1
Kunicki, T.J.2
-
8
-
-
34547632484
-
Discovery of tissue-specific exons using comprehensive human exon microarrays
-
doi: 10.1186/gb-2007-8-4-r64
-
Clark, T.A., Schweitzer, A.C., Chen, T.X., Staples, M.K., Lu, G., Wang, H., Williams, A., and Blume, J.E. 2007. Discovery of tissue-specific exons using comprehensive human exon microarrays. Genome Biol. 8: R64. doi: 10.1186/gb-2007-8-4-r64.
-
(2007)
Genome Biol
, vol.8
-
-
Clark, T.A.1
Schweitzer, A.C.2
Chen, T.X.3
Staples, M.K.4
Lu, G.5
Wang, H.6
Williams, A.7
Blume, J.E.8
-
9
-
-
33846467191
-
Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
-
Gardina, P.J., Clark, T.A., Shimada, B., Staples, M.K., Yang, Q., Veitch, J., Schweitzer, A., Awad, T., Sugnet, C., Dee, S., et al. 2006. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array. BMC Genomics 7: 325.
-
(2006)
BMC Genomics
, vol.7
, pp. 325
-
-
Gardina, P.J.1
Clark, T.A.2
Shimada, B.3
Staples, M.K.4
Yang, Q.5
Veitch, J.6
Schweitzer, A.7
Awad, T.8
Sugnet, C.9
Dee, S.10
-
10
-
-
22544468490
-
Binding of hnRNP L to the pre-mRNA processing enhancer of the herpes simplex virus thymidine kinase gene enhances both polyadenylation and nucleocytoplasmic export of intronless mRNAs
-
Guang, S., Felthauser, A.M., and Mertz, J.E. 2005. Binding of hnRNP L to the pre-mRNA processing enhancer of the herpes simplex virus thymidine kinase gene enhances both polyadenylation and nucleocytoplasmic export of intronless mRNAs. Mol. Cell. Biol. 25: 6303-6313.
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 6303-6313
-
-
Guang, S.1
Felthauser, A.M.2
Mertz, J.E.3
-
11
-
-
3543095590
-
Heterogeneous nuclear ribonucleoprotein L interacts with the 3′ border of the internal ribosomal entry site of hepatitis C virus
-
Hahm, B., Kim, Y.K., Kim, J.H., Kim, T.Y., and Jang, S.K. 1998a. Heterogeneous nuclear ribonucleoprotein L interacts with the 3′ border of the internal ribosomal entry site of hepatitis C virus. J. Virol. 72: 8782-8788.
-
(1998)
J. Virol
, vol.72
, pp. 8782-8788
-
-
Hahm, B.1
Kim, Y.K.2
Kim, J.H.3
Kim, T.Y.4
Jang, S.K.5
-
12
-
-
0032478588
-
Polypyrimidine tract-binding protein interacts with hnRNP L
-
Hahm, B., Cho, O.H., Kim, J.E., Kim, Y.K., Kim, J.H., Oh, Y.L., and Jang, S.K. 1998b. Polypyrimidine tract-binding protein interacts with hnRNP L. FEBS Lett. 425: 401-406.
-
(1998)
FEBS Lett
, vol.425
, pp. 401-406
-
-
Hahm, B.1
Cho, O.H.2
Kim, J.E.3
Kim, Y.K.4
Kim, J.H.5
Oh, Y.L.6
Jang, S.K.7
-
13
-
-
33749515475
-
An exonic splicing silencer represses spliceosome assembly after ATP-dependent exon recognition
-
House, A.E. and Lynch, K.W. 2006. An exonic splicing silencer represses spliceosome assembly after ATP-dependent exon recognition. Nat. Struct. Mol. Biol. 13: 937-944.
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 937-944
-
-
House, A.E.1
Lynch, K.W.2
-
14
-
-
29044447700
-
Alternative pre-mRNA splicing in the human system: Unexpected role of repetitive sequences as regulatory elements
-
Hui, J. and Bindereif, A. 2005. Alternative pre-mRNA splicing in the human system: Unexpected role of repetitive sequences as regulatory elements. Biol. Chem. 386: 1265-1271.
-
(2005)
Biol. Chem
, vol.386
, pp. 1265-1271
-
-
Hui, J.1
Bindereif, A.2
-
15
-
-
0037217365
-
HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats
-
Hui, J., Stangl, K., Lane, W.L., and Bindereif, A. 2003a. HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats. Nat. Struct. Biol. 10: 33-37.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 33-37
-
-
Hui, J.1
Stangl, K.2
Lane, W.L.3
Bindereif, A.4
-
16
-
-
0042808438
-
Novel functional role of CA repeats and hnRNP L in RNA stability
-
Hui, J., Reither, G., and Bindereif, A. 2003b. Novel functional role of CA repeats and hnRNP L in RNA stability. RNA 9: 931-936.
-
(2003)
RNA
, vol.9
, pp. 931-936
-
-
Hui, J.1
Reither, G.2
Bindereif, A.3
-
17
-
-
21244469877
-
Intronic CA-repeat and CA-rich elements: A new class of regulators of mammalian alternative splicing
-
Hui, J., Hung, L.H., Heiner, M., Schreiner, S., Neumüller, N., Reither, G., Haas, S.A., and Bindereif, A. 2005. Intronic CA-repeat and CA-rich elements: A new class of regulators of mammalian alternative splicing. EMBO J. 24: 1988-1998.
-
(2005)
EMBO J
, vol.24
, pp. 1988-1998
-
-
Hui, J.1
Hung, L.H.2
Heiner, M.3
Schreiner, S.4
Neumüller, N.5
Reither, G.6
Haas, S.A.7
Bindereif, A.8
-
18
-
-
33947720465
-
Global analysis of alternative splicing during T-cell activation
-
Ip, J.Y., Tong, A., Pan, Q., Topp, J.D., Blencowe, B.J., and Lynch, K.W. 2007. Global analysis of alternative splicing during T-cell activation. RNA 13: 563-572.
-
(2007)
RNA
, vol.13
, pp. 563-572
-
-
Ip, J.Y.1
Tong, A.2
Pan, Q.3
Topp, J.D.4
Blencowe, B.J.5
Lynch, K.W.6
-
19
-
-
0034607554
-
Protein-protein interaction among hnRNPs shuttling between nucleus and cytoplasm
-
Kim, J.H., Hahm, B., Kim, Y.K., Choi, M., and Jang, S.K. 2000. Protein-protein interaction among hnRNPs shuttling between nucleus and cytoplasm. J. Mol. Biol. 298: 395-405.
-
(2000)
J. Mol. Biol
, vol.298
, pp. 395-405
-
-
Kim, J.H.1
Hahm, B.2
Kim, Y.K.3
Choi, M.4
Jang, S.K.5
-
20
-
-
0023895357
-
A small-scale procedure for preparation of nuclear extracts that support efficient transcription and pre-mRNA splicing
-
Lee, K.A., Bindereif, A., and Green, M.R. 1988. A small-scale procedure for preparation of nuclear extracts that support efficient transcription and pre-mRNA splicing. Gene Anal. Tech. 5: 22-31.
-
(1988)
Gene Anal. Tech
, vol.5
, pp. 22-31
-
-
Lee, K.A.1
Bindereif, A.2
Green, M.R.3
-
21
-
-
0029142841
-
HnRNP L binds a cis-acting RNA sequence element that enables intron-independent gene expression
-
Liu, X. and Mertz, J.E. 1995. HnRNP L binds a cis-acting RNA sequence element that enables intron-independent gene expression. Genes & Dev. 9: 1766-1780.
-
(1995)
Genes & Dev
, vol.9
, pp. 1766-1780
-
-
Liu, X.1
Mertz, J.E.2
-
22
-
-
0036337915
-
A genomic view of alternative splicing
-
Modrek, B. and Lee, C. 2002. A genomic view of alternative splicing. Nat. Genet. 30: 13-19.
-
(2002)
Nat. Genet
, vol.30
, pp. 13-19
-
-
Modrek, B.1
Lee, C.2
-
23
-
-
33947305594
-
Ultra-conserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
-
Ni, J.Z., Grate, L., Donohue, J.P., Preston, C., Nobida, N., O'Brien, G., Shiue, L., Clark, T.A., Blume, J.E., and Ares Jr., M. 2007. Ultra-conserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes & Dev. 21: 708-718.
-
(2007)
Genes & Dev
, vol.21
, pp. 708-718
-
-
Ni, J.Z.1
Grate, L.2
Donohue, J.P.3
Preston, C.4
Nobida, N.5
O'Brien, G.6
Shiue, L.7
Clark, T.A.8
Blume, J.E.9
Ares Jr., M.10
-
24
-
-
0036544858
-
A new type of mutation causes a splicing defect in ATM
-
Pagani, F., Buratti, E., Stuani, C., Bendix, R., Dork, T., and Baralle, F.E. 2002. A new type of mutation causes a splicing defect in ATM. Nat. Genet. 30: 426-429.
-
(2002)
Nat. Genet
, vol.30
, pp. 426-429
-
-
Pagani, F.1
Buratti, E.2
Stuani, C.3
Bendix, R.4
Dork, T.5
Baralle, F.E.6
-
25
-
-
19944365069
-
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
-
Pan, Q., Shai, O., Misquitta, C., Zhang, W., Saltzman, A.L., Mohammad, N., Babak, T., Siu, H., Hughes, T.R., Morris, Q.D., et al. 2004. Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform. Mol. Cell 16: 929-941.
-
(2004)
Mol. Cell
, vol.16
, pp. 929-941
-
-
Pan, Q.1
Shai, O.2
Misquitta, C.3
Zhang, W.4
Saltzman, A.L.5
Mohammad, N.6
Babak, T.7
Siu, H.8
Hughes, T.R.9
Morris, Q.D.10
-
26
-
-
30944449484
-
Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression
-
Pan, Q., Saltzman, A.L., Kim, Y.K., Misquitta, C., Shai, O., Maquat, L.E., Frey, B.J., and Blencowe, B.J. 2006. Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression. Genes & Dev. 20: 153-158.
-
(2006)
Genes & Dev
, vol.20
, pp. 153-158
-
-
Pan, Q.1
Saltzman, A.L.2
Kim, Y.K.3
Misquitta, C.4
Shai, O.5
Maquat, L.E.6
Frey, B.J.7
Blencowe, B.J.8
-
27
-
-
0024835141
-
A novel heterogeneous nuclear RNP protein with a unique distribution on nascent transcripts
-
Piñol-Roma, S., Swanson, M.S., Gall, J.G., and Dreyfuss, G. 1989. A novel heterogeneous nuclear RNP protein with a unique distribution on nascent transcripts. J. Cell Biol. 109: 2575-2587.
-
(1989)
J. Cell Biol
, vol.109
, pp. 2575-2587
-
-
Piñol-Roma, S.1
Swanson, M.S.2
Gall, J.G.3
Dreyfuss, G.4
-
28
-
-
23844471326
-
HnRNP L represses exon splicing via a regulated exonic splicing silencer
-
Rothrock, C.R., House, A.E., and Lynch, K.W. 2005. HnRNP L represses exon splicing via a regulated exonic splicing silencer. EMBO J. 24: 2792-2802.
-
(2005)
EMBO J
, vol.24
, pp. 2792-2802
-
-
Rothrock, C.R.1
House, A.E.2
Lynch, K.W.3
-
29
-
-
0033555522
-
Regulation of human vascular endothelial growth factor mRNA stability in hypoxia by heterogeneous nuclear ribonucleoprotein L
-
Shih, S.C. and Claffey, K.P. 1999. Regulation of human vascular endothelial growth factor mRNA stability in hypoxia by heterogeneous nuclear ribonucleoprotein L. J. Biol. Chem. 274: 1359-1365.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 1359-1365
-
-
Shih, S.C.1
Claffey, K.P.2
-
30
-
-
2642513654
-
Silencer elements as possible inhibitors of pseudoexon splicing
-
Sironi, M., Menozzi, G., Riva, L., Cagliani, R., Comi, G.P., Bresolin, N., Giorda, R., and Pozzoli, U. 2004. Silencer elements as possible inhibitors of pseudoexon splicing. Nucleic Acids Res. 32: 1783-1791.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1783-1791
-
-
Sironi, M.1
Menozzi, G.2
Riva, L.3
Cagliani, R.4
Comi, G.P.5
Bresolin, N.6
Giorda, R.7
Pozzoli, U.8
-
31
-
-
33645760966
-
Unusual intron conservation near tissue-regulated exons found by splicing microarrays
-
Sugnet, C.W., Srinivasan, K., Clark, T.A., O'Brien, G., Cline, M.S., Wang, H., Williams, A., Kulp, D., Blume, J.E., Haussler, D., et al. 2006. Unusual intron conservation near tissue-regulated exons found by splicing microarrays. PLoS Comput. Biol. 2: e4.
-
(2006)
PLoS Comput. Biol
, vol.2
-
-
Sugnet, C.W.1
Srinivasan, K.2
Clark, T.A.3
O'Brien, G.4
Cline, M.S.5
Wang, H.6
Williams, A.7
Kulp, D.8
Blume, J.E.9
Haussler, D.10
-
32
-
-
0033846543
-
Multiple splicing defects in an intronic false exon
-
Sun, H. and Chasin, L.A. 2000. Multiple splicing defects in an intronic false exon. Mol. Cell. Biol. 20: 6414-6425.
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 6414-6425
-
-
Sun, H.1
Chasin, L.A.2
-
33
-
-
13744254695
-
A large-scale analysis of mRNA polyadenylation of human and mouse genes
-
doi: 10.1093/nar/gki158
-
Tian, B., Hu, J., Zhang, H., and Lutz, C.S. 2005. A large-scale analysis of mRNA polyadenylation of human and mouse genes. Nucleic Acids Res. 33: 201-212. doi: 10.1093/nar/gki158.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 201-212
-
-
Tian, B.1
Hu, J.2
Zhang, H.3
Lutz, C.S.4
-
34
-
-
33846870354
-
Widespread mRNA polyadenylation events in introns indicate dynamic interplay between polyadenylation and splicing
-
Tian, B., Pan, Z., and Lee, J.Y. 2007. Widespread mRNA polyadenylation events in introns indicate dynamic interplay between polyadenylation and splicing. Genome Res. 17: 156-165.
-
(2007)
Genome Res
, vol.17
, pp. 156-165
-
-
Tian, B.1
Pan, Z.2
Lee, J.Y.3
-
35
-
-
0038657626
-
Pseudoexon activation in the DMD gene as a novel mechanism for Becker muscular dystrophy
-
Tuffery-Giraud, S., Saquet, C., Chambert, S., and Claustres, M. 2003. Pseudoexon activation in the DMD gene as a novel mechanism for Becker muscular dystrophy. Hum. Mutat. 21: 608-614.
-
(2003)
Hum. Mutat
, vol.21
, pp. 608-614
-
-
Tuffery-Giraud, S.1
Saquet, C.2
Chambert, S.3
Claustres, M.4
-
36
-
-
23044431574
-
Nova regulates brain-specific splicing to shape the synapse
-
Ule, J., Ule, A., Spencer, J., Williams, A., Hu, J.S., Cline, M., Wang, H., Clark, T., Fraser, C., Ruggiu, M., et al. 2005. Nova regulates brain-specific splicing to shape the synapse. Nat. Genet. 37: 844-852.
-
(2005)
Nat. Genet
, vol.37
, pp. 844-852
-
-
Ule, J.1
Ule, A.2
Spencer, J.3
Williams, A.4
Hu, J.S.5
Cline, M.6
Wang, H.7
Clark, T.8
Fraser, C.9
Ruggiu, M.10
-
37
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston, R.H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J.F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
|