메뉴 건너뛰기




Volumn 20, Issue 3, 2010, Pages 305-312

Structure and function of nematode RNA-binding proteins

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE PROTEIN; BINDING PROTEIN; FEM 3 BINDING FACTOR; PROTEIN PUF; RNA BINDING PROTEIN; TTP LIKE ZINC FINGER PROTEIN; UNCLASSIFIED DRUG;

EID: 77955572742     PISSN: 0959440X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.sbi.2010.03.010     Document Type: Review
Times cited : (18)

References (50)
  • 1
    • 0025734020 scopus 로고
    • The maternal gene nanos has a central role in posterior pattern formation of the Drosophila embryo
    • Lehmann R., Nusslein-Volhard C. The maternal gene nanos has a central role in posterior pattern formation of the Drosophila embryo. Development 1991, 112:679-691.
    • (1991) Development , vol.112 , pp. 679-691
    • Lehmann, R.1    Nusslein-Volhard, C.2
  • 2
    • 0031452082 scopus 로고    scopus 로고
    • A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ line
    • Zhang B., Gallegos M., Puoti A., Durkin E., Fields S., Kimble J., Wickens M.P. A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ line. Nature 1997, 390:477-484.
    • (1997) Nature , vol.390 , pp. 477-484
    • Zhang, B.1    Gallegos, M.2    Puoti, A.3    Durkin, E.4    Fields, S.5    Kimble, J.6    Wickens, M.P.7
  • 3
    • 0026031875 scopus 로고
    • The TIS11 primary response gene is a member of a gene family that encodes proteins with a highly conserved sequence containing an unusual Cys-His repeat
    • Varnum B.C, Ma Q.F., Chi T.H., Fletcher B., Herschman H.R. The TIS11 primary response gene is a member of a gene family that encodes proteins with a highly conserved sequence containing an unusual Cys-His repeat. Mol Cell Biol 1991, 11:1754-1758.
    • (1991) Mol Cell Biol , vol.11 , pp. 1754-1758
    • Varnum, B.C.1    Ma, Q.F.2    Chi, T.H.3    Fletcher, B.4    Herschman, H.R.5
  • 4
    • 0032922940 scopus 로고    scopus 로고
    • Pos-1 encodes a cytoplasmic zinc-finger protein essential for germline specification in C. elegans
    • Tabara H., Hill R.J., Mello C.C., Priess J.R., Kohara Y. Pos-1 encodes a cytoplasmic zinc-finger protein essential for germline specification in C. elegans. Development 1999, 126:1-11.
    • (1999) Development , vol.126 , pp. 1-11
    • Tabara, H.1    Hill, R.J.2    Mello, C.C.3    Priess, J.R.4    Kohara, Y.5
  • 5
    • 0033634970 scopus 로고    scopus 로고
    • MEX-5 and MEX-6 function to establish soma/germline asymmetry in early C. elegans embryos
    • Schubert C.M., Lin R., de Vries C.J., Plasterk R.H., Priess J.R. MEX-5 and MEX-6 function to establish soma/germline asymmetry in early C. elegans embryos. Mol Cell 2000, 5:671-682.
    • (2000) Mol Cell , vol.5 , pp. 671-682
    • Schubert, C.M.1    Lin, R.2    de Vries, C.J.3    Plasterk, R.H.4    Priess, J.R.5
  • 6
    • 0035433726 scopus 로고    scopus 로고
    • Two zinc finger proteins, OMA-1 and OMA-2, are redundantly required for oocyte maturation in C. elegans
    • Detwiler M.R., Reuben M., Li X., Rogers E., Lin R. Two zinc finger proteins, OMA-1 and OMA-2, are redundantly required for oocyte maturation in C. elegans. Dev Cell 2001, 1:187-199.
    • (2001) Dev Cell , vol.1 , pp. 187-199
    • Detwiler, M.R.1    Reuben, M.2    Li, X.3    Rogers, E.4    Lin, R.5
  • 10
    • 15444365620 scopus 로고    scopus 로고
    • Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1
    • Bernstein D., Hook B., Hajarnavis A., Opperman L., Wickens M. Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1. RNA 2005, 11:447-458.
    • (2005) RNA , vol.11 , pp. 447-458
    • Bernstein, D.1    Hook, B.2    Hajarnavis, A.3    Opperman, L.4    Wickens, M.5
  • 11
    • 0025963078 scopus 로고
    • Control of the sperm-oocyte switch in Caenorhabditis elegans hermaphrodites by the fem-3-3' untranslated region
    • Ahringer J., Kimble J. Control of the sperm-oocyte switch in Caenorhabditis elegans hermaphrodites by the fem-3-3' untranslated region. Nature 1991, 349:346-438.
    • (1991) Nature , vol.349 , pp. 346-438
    • Ahringer, J.1    Kimble, J.2
  • 12
    • 0028796703 scopus 로고
    • Gld-1, a tumor suppressor gene required for oocyte development in Caenorhabditis elegans
    • Francis R., Barton M.K., Kimble J., Schedl T. gld-1, a tumor suppressor gene required for oocyte development in Caenorhabditis elegans. Genetics 1995, 139:579-606.
    • (1995) Genetics , vol.139 , pp. 579-606
    • Francis, R.1    Barton, M.K.2    Kimble, J.3    Schedl, T.4
  • 13
    • 0028873015 scopus 로고
    • Analysis of the multiple roles of gld-1 in germline development: interactions with the sex determination cascade and the glp-1 signaling pathway
    • Francis R., Maine E., Schedl T. Analysis of the multiple roles of gld-1 in germline development: interactions with the sex determination cascade and the glp-1 signaling pathway. Genetics 1995, 139:607-630.
    • (1995) Genetics , vol.139 , pp. 607-630
    • Francis, R.1    Maine, E.2    Schedl, T.3
  • 14
    • 33847671335 scopus 로고    scopus 로고
    • The RNA-binding proteins PUF-5, PUF-6, and PUF-7 reveal multiple systems for maternal mRNA regulation during C. elegans oogenesis
    • Lublin A.L., Evans T.C. The RNA-binding proteins PUF-5, PUF-6, and PUF-7 reveal multiple systems for maternal mRNA regulation during C. elegans oogenesis. Dev Biol 2007, 303:635-649.
    • (2007) Dev Biol , vol.303 , pp. 635-649
    • Lublin, A.L.1    Evans, T.C.2
  • 15
    • 34247582864 scopus 로고    scopus 로고
    • The Caenorhabditis elegans pumilio homolog, puf-9, is required for the 3'UTR-mediated repression of the let-7 microRNA target gene, hbl-1
    • Nolde M.J., Saka N., Reinert K.L., Slack F.J. The Caenorhabditis elegans pumilio homolog, puf-9, is required for the 3'UTR-mediated repression of the let-7 microRNA target gene, hbl-1. Dev Biol 2007, 305:551-563.
    • (2007) Dev Biol , vol.305 , pp. 551-563
    • Nolde, M.J.1    Saka, N.2    Reinert, K.L.3    Slack, F.J.4
  • 18
    • 73949159967 scopus 로고    scopus 로고
    • Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein
    • Wang Y., Opperman L., Wickens M., Hall T.M. Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein. Proc Natl Acad Sci USA 2009, 106:20186-20191.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 20186-20191
    • Wang, Y.1    Opperman, L.2    Wickens, M.3    Hall, T.M.4
  • 19
    • 66449119611 scopus 로고    scopus 로고
    • A single C. elegans PUF protein binds RNA in multiple modes
    • Koh Y.Y., Opperman L., Stumpf C., Mandan A., Keles S., Wickens M. A single C. elegans PUF protein binds RNA in multiple modes. RNA 2009, 15:1090-1099.
    • (2009) RNA , vol.15 , pp. 1090-1099
    • Koh, Y.Y.1    Opperman, L.2    Stumpf, C.3    Mandan, A.4    Keles, S.5    Wickens, M.6
  • 20
    • 47949100841 scopus 로고    scopus 로고
    • A Caenorhabditis elegans PUF protein family with distinct RNA binding specificity
    • Stumpf C.R., Kimble J., Wickens M. A Caenorhabditis elegans PUF protein family with distinct RNA binding specificity. RNA 2008, 14:1550-1557.
    • (2008) RNA , vol.14 , pp. 1550-1557
    • Stumpf, C.R.1    Kimble, J.2    Wickens, M.3
  • 21
    • 33644991514 scopus 로고    scopus 로고
    • A single spacer nucleotide determines the specificities of two mRNA regulatory proteins
    • Opperman L., Hook B., DeFino M., Bernstein D.S., Wickens M. A single spacer nucleotide determines the specificities of two mRNA regulatory proteins. Nat Struct Mol Biol 2005, 12:945-951.
    • (2005) Nat Struct Mol Biol , vol.12 , pp. 945-951
    • Opperman, L.1    Hook, B.2    DeFino, M.3    Bernstein, D.S.4    Wickens, M.5
  • 22
    • 0037162703 scopus 로고    scopus 로고
    • Modular recognition of RNA by a human pumilio-homology domain
    • Wang X., McLachlan J., Zamore P.D., Hall T.M. Modular recognition of RNA by a human pumilio-homology domain. Cell 2002, 110:501-512.
    • (2002) Cell , vol.110 , pp. 501-512
    • Wang, X.1    McLachlan, J.2    Zamore, P.D.3    Hall, T.M.4
  • 23
    • 0035022798 scopus 로고    scopus 로고
    • Crystal structure of a Pumilio homology domain
    • Wang X., Zamore P.D., Hall T.M. Crystal structure of a Pumilio homology domain. Mol Cell 2001, 7:855-865.
    • (2001) Mol Cell , vol.7 , pp. 855-865
    • Wang, X.1    Zamore, P.D.2    Hall, T.M.3
  • 24
    • 0035917508 scopus 로고    scopus 로고
    • Structure of Pumilio reveals similarity between RNA and peptide binding motifs
    • Edwards T.A., Pyle S.E., Wharton R.P., Aggarwal A.K. Structure of Pumilio reveals similarity between RNA and peptide binding motifs. Cell 2001, 105:281-329.
    • (2001) Cell , vol.105 , pp. 281-329
    • Edwards, T.A.1    Pyle, S.E.2    Wharton, R.P.3    Aggarwal, A.K.4
  • 25
    • 60349124749 scopus 로고    scopus 로고
    • Understanding and engineering RNA sequence specificity of PUF proteins
    • Lu G., Dolgner S.J., Hall T.M. Understanding and engineering RNA sequence specificity of PUF proteins. Curr Opin Struct Biol 2009, 19:110-115.
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 110-115
    • Lu, G.1    Dolgner, S.J.2    Hall, T.M.3
  • 26
    • 0036863118 scopus 로고    scopus 로고
    • Tristetraprolin and other CCCH tandem zinc-finger proteins in the regulation of mRNA turnover
    • Blackshear P.J. Tristetraprolin and other CCCH tandem zinc-finger proteins in the regulation of mRNA turnover. Biochem Soc Trans 2002, 30:945-952.
    • (2002) Biochem Soc Trans , vol.30 , pp. 945-952
    • Blackshear, P.J.1
  • 27
    • 0033049125 scopus 로고    scopus 로고
    • Evidence that tristetraprolin binds to AU-rich elements and promotes the deadenylation and destabilization of tumor necrosis factor alpha mRNA
    • Lai W.S., Carballo E., Strum J.R., Kennington E.A., Phillips R.S., Blackshear P.J. Evidence that tristetraprolin binds to AU-rich elements and promotes the deadenylation and destabilization of tumor necrosis factor alpha mRNA. Mol Cell Biol 1999, 19:4311-4323.
    • (1999) Mol Cell Biol , vol.19 , pp. 4311-4323
    • Lai, W.S.1    Carballo, E.2    Strum, J.R.3    Kennington, E.A.4    Phillips, R.S.5    Blackshear, P.J.6
  • 28
    • 3142615474 scopus 로고    scopus 로고
    • RNA sequence elements required for high affinity binding by the zinc finger domain of tristetraprolin: conformational changes coupled to the bipartite nature of Au-rich MRNA-destabilizing motifs
    • Brewer B.Y., Malicka J., Blackshear P.J., Wilson G.M. RNA sequence elements required for high affinity binding by the zinc finger domain of tristetraprolin: conformational changes coupled to the bipartite nature of Au-rich MRNA-destabilizing motifs. J Biol Chem 2004, 279:27870-27877.
    • (2004) J Biol Chem , vol.279 , pp. 27870-27877
    • Brewer, B.Y.1    Malicka, J.2    Blackshear, P.J.3    Wilson, G.M.4
  • 29
    • 0026651316 scopus 로고
    • The pie-1 and mex-1 genes and maternal control of blastomere identity in early C. elegans embryos
    • Mello C.C., Draper B.W., Krause M., Weintraub H., Priess J.R. The pie-1 and mex-1 genes and maternal control of blastomere identity in early C. elegans embryos. Cell 1992, 70:163-176.
    • (1992) Cell , vol.70 , pp. 163-176
    • Mello, C.C.1    Draper, B.W.2    Krause, M.3    Weintraub, H.4    Priess, J.R.5
  • 30
    • 0037386142 scopus 로고    scopus 로고
    • Polarization of the C. elegans zygote proceeds via distinct establishment and maintenance phases
    • Cuenca A.A, Schetter A., Aceto D., Kemphues K., Seydoux G. Polarization of the C. elegans zygote proceeds via distinct establishment and maintenance phases. Development 2003, 130:1255-1265.
    • (2003) Development , vol.130 , pp. 1255-1265
    • Cuenca, A.A.1    Schetter, A.2    Aceto, D.3    Kemphues, K.4    Seydoux, G.5
  • 31
    • 0033634863 scopus 로고    scopus 로고
    • Asymmetric segregation of PIE-1 in C. elegans is mediated by two complementary mechanisms that act through separate PIE-1 protein domains
    • Reese K.J., Dunn M.A., Waddle J.A., Seydoux G. Asymmetric segregation of PIE-1 in C. elegans is mediated by two complementary mechanisms that act through separate PIE-1 protein domains. Mol Cell 2000, 6:445-455.
    • (2000) Mol Cell , vol.6 , pp. 445-455
    • Reese, K.J.1    Dunn, M.A.2    Waddle, J.A.3    Seydoux, G.4
  • 32
    • 35648973774 scopus 로고    scopus 로고
    • DAF-16/FOXO targets genes that regulate tumor growth in Caenorhabditis elegans
    • Pinkston-Gosse J, Kenyon C. DAF-16/FOXO targets genes that regulate tumor growth in Caenorhabditis elegans. Nat Genet 2007, 39:1403-1409.
    • (2007) Nat Genet , vol.39 , pp. 1403-1409
    • Pinkston-Gosse, J.1    Kenyon, C.2
  • 34
    • 57049154621 scopus 로고    scopus 로고
    • RNA target specificity of the embryonic cell fate determinant POS-1
    • Farley B., Pagano J.M., Ryder S. RNA target specificity of the embryonic cell fate determinant POS-1. RNA 2008, 14:2685-2697.
    • (2008) RNA , vol.14 , pp. 2685-2697
    • Farley, B.1    Pagano, J.M.2    Ryder, S.3
  • 35
    • 34247856078 scopus 로고    scopus 로고
    • Molecular basis of RNA recognition by the embryonic polarity determinant MEX-5
    • Pagano J.M., Farley B., McCoig L.M., Ryder S. Molecular basis of RNA recognition by the embryonic polarity determinant MEX-5. J Biol Chem 2007, 282:8883-8894.
    • (2007) J Biol Chem , vol.282 , pp. 8883-8894
    • Pagano, J.M.1    Farley, B.2    McCoig, L.M.3    Ryder, S.4
  • 36
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: an expanding universe
    • Ghildiyal M., Zamore P.D. Small silencing RNAs: an expanding universe. Nat Rev Genet 2009, 10:94-108.
    • (2009) Nat Rev Genet , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 37
    • 37549014207 scopus 로고    scopus 로고
    • Argonaute proteins: key players in RNA silencing
    • Hutvagner G., Simard M.J. Argonaute proteins: key players in RNA silencing. Nat Rev Mol Cell Biol 2008, 9:22-32.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 22-32
    • Hutvagner, G.1    Simard, M.J.2
  • 39
    • 33846524902 scopus 로고    scopus 로고
    • Secondary siRNAs result from unprimed RNA synthesis and form a distinct class
    • Sijen T., Steiner F.A., Thijssen K.L., Plasterk R.H. Secondary siRNAs result from unprimed RNA synthesis and form a distinct class. Science 2007, 315:244-247.
    • (2007) Science , vol.315 , pp. 244-247
    • Sijen, T.1    Steiner, F.A.2    Thijssen, K.L.3    Plasterk, R.H.4
  • 40
    • 33846527241 scopus 로고    scopus 로고
    • Distinct populations of primary and secondary effectors during RNAi in C. elegans
    • Pak J., Fire A. Distinct populations of primary and secondary effectors during RNAi in C. elegans. Science 2007, 315:241-244.
    • (2007) Science , vol.315 , pp. 241-244
    • Pak, J.1    Fire, A.2
  • 41
    • 17844364875 scopus 로고    scopus 로고
    • Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing
    • Grishok A., Pasquinelli A.E., Conte D., Li N., Parrish S., Ha I., Baillie D.L., Fire A., Ruvkun G., Mello C.C. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell 2001, 106:23-34.
    • (2001) Cell , vol.106 , pp. 23-34
    • Grishok, A.1    Pasquinelli, A.E.2    Conte, D.3    Li, N.4    Parrish, S.5    Ha, I.6    Baillie, D.L.7    Fire, A.8    Ruvkun, G.9    Mello, C.C.10
  • 46
    • 70349961432 scopus 로고    scopus 로고
    • Nucleation, propagation and cleavage of target RNAs in ago silencing complexes
    • Wang Y., Juranek S., Li H., Sheng G., Wardle G.S., Tuschl T., Patel D.J. Nucleation, propagation and cleavage of target RNAs in ago silencing complexes. Nature 2009, 461:754-761.
    • (2009) Nature , vol.461 , pp. 754-761
    • Wang, Y.1    Juranek, S.2    Li, H.3    Sheng, G.4    Wardle, G.S.5    Tuschl, T.6    Patel, D.J.7
  • 47
    • 4444302947 scopus 로고    scopus 로고
    • Crystal structure of Argonaute and its implications for RISC slicer activity
    • Song J.J., Smith S.K., Hannon G.J., Joshua-Tor L. Crystal structure of Argonaute and its implications for RISC slicer activity. Science 2004, 305:1434-1437.
    • (2004) Science , vol.305 , pp. 1434-1437
    • Song, J.J.1    Smith, S.K.2    Hannon, G.J.3    Joshua-Tor, L.4
  • 48
    • 14644393684 scopus 로고    scopus 로고
    • Perspective: machines for RNAi
    • Tomari Y., Zamore P.D. Perspective: machines for RNAi. Genes Dev 2005, 19:517-529.
    • (2005) Genes Dev , vol.19 , pp. 517-529
    • Tomari, Y.1    Zamore, P.D.2
  • 49
    • 37149049127 scopus 로고    scopus 로고
    • In vitro analyses of the production and activity of secondary small interfering RNAs in C. elegans
    • Aoki K., Moriguchi H., Yoshioka T., Okawa K., Tabara H. In vitro analyses of the production and activity of secondary small interfering RNAs in C. elegans. EMBO J 2007, 26:5007-5019.
    • (2007) EMBO J , vol.26 , pp. 5007-5019
    • Aoki, K.1    Moriguchi, H.2    Yoshioka, T.3    Okawa, K.4    Tabara, H.5
  • 50
    • 41149174259 scopus 로고    scopus 로고
    • Regulation of maternal mRNAs in early development
    • Farley B., Ryder S. Regulation of maternal mRNAs in early development. Crit Rev Biochem Mol Biol 2008, 43:135-162.
    • (2008) Crit Rev Biochem Mol Biol , vol.43 , pp. 135-162
    • Farley, B.1    Ryder, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.