-
1
-
-
0033529565
-
Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
-
10.1016/S0092-8674(00)81958-3. 10458604
-
Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. RD Kornberg Y Lorch, Cell 1999 98 285 294 10.1016/S0092-8674(00)81958-3 10458604
-
(1999)
Cell
, vol.98
, pp. 285-294
-
-
Kornberg, R.D.1
Lorch, Y.2
-
2
-
-
17044365726
-
Nucleosome and chromatin fiber dynamics
-
10.1016/j.sbi.2005.03.006. 15837178
-
Nucleosome and chromatin fiber dynamics. K Luger JC Hansen, Curr Opin Struct Biol 2005 15 188 196 10.1016/j.sbi.2005.03.006 15837178
-
(2005)
Curr Opin Struct Biol
, vol.15
, pp. 188-196
-
-
Luger, K.1
Hansen, J.C.2
-
3
-
-
0021704988
-
The higher order structure of chromatin and histone H1
-
The higher order structure of chromatin and histone H1. JO Thomas, J Cell Sci 1984 1 1 20
-
(1984)
J Cell Sci
, vol.1
, pp. 1-20
-
-
Thomas, J.O.1
-
4
-
-
52949145609
-
Friedreich's ataxia GAA.TTC duplex and GAA.GAA.TTC triplex structures exclude nucleosome assembly
-
10.1016/j.jmb.2008.08.053. 18775729
-
Friedreich's ataxia GAA.TTC duplex and GAA.GAA.TTC triplex structures exclude nucleosome assembly. H Ruan YH Wang, J Mol Biol 2008 383 292 300 10.1016/j.jmb.2008.08.053 18775729
-
(2008)
J Mol Biol
, vol.383
, pp. 292-300
-
-
Ruan, H.1
Wang, Y.H.2
-
5
-
-
0032512794
-
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
-
10.1006/jmbi.1997.1494. 9514715
-
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. PT Lowary J Widom, J Mol Biol 1998 276 19 42 10.1006/jmbi.1997.1494 9514715
-
(1998)
J Mol Biol
, vol.276
, pp. 19-42
-
-
Lowary, P.T.1
Widom, J.2
-
6
-
-
0031564633
-
Identification and characterization of genomic nucleosome-positioning sequences
-
10.1006/jmbi.1997.0916. 9135113
-
Identification and characterization of genomic nucleosome-positioning sequences. HR Widlund H Cao S Simonsson E Magnusson T Simonsson PE Nielsen JD Kahn DM Crothers M Kubista, J Mol Biol 1997 267 807 817 10.1006/jmbi.1997.0916 9135113
-
(1997)
J Mol Biol
, vol.267
, pp. 807-817
-
-
Widlund, H.R.1
Cao, H.2
Simonsson, S.3
Magnusson, E.4
Simonsson, T.5
Nielsen, P.E.6
Kahn, J.D.7
Crothers, D.M.8
Kubista, M.9
-
7
-
-
60349089645
-
Nucleosome positioning and gene regulation: Advances through genomics
-
10.1038/nrg2522. 19204718
-
Nucleosome positioning and gene regulation: advances through genomics. C Jiang BF Pugh, Nat Rev Genet 2009 10 161 172 10.1038/nrg2522 19204718
-
(2009)
Nat Rev Genet
, vol.10
, pp. 161-172
-
-
Jiang, C.1
Pugh, B.F.2
-
8
-
-
77950361329
-
Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences?
-
10.1093/nar/gkp1043. 19934265
-
Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences? A Stein TE Takasuka CK Collings, Nucleic Acids Res 2010 38 709 719 10.1093/nar/gkp1043 19934265
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 709-719
-
-
Stein, A.1
Takasuka, T.E.2
Collings, C.K.3
-
9
-
-
33747500567
-
A genomic code for nucleosome positioning
-
10.1038/nature04979. 16862119
-
A genomic code for nucleosome positioning. E Segal Y Fondufe-Mittendorf L Chen A Thastrom Y Field IK Moore JP Wang J Widom, Nature 2006 442 772 778 10.1038/nature04979 16862119
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
Fondufe-Mittendorf, Y.2
Chen, L.3
Thastrom, A.4
Field, Y.5
Moore, I.K.6
Wang, J.P.7
Widom, J.8
-
10
-
-
34547643563
-
Nucleosome positioning signals in genomic DNA
-
10.1101/gr.6101007. 17620451
-
Nucleosome positioning signals in genomic DNA. HE Peckham RE Thurman Y Fu JA Stamatoyannopoulos WS Noble K Struhl Z Weng, Genome Res 2007 17 1170 1177 10.1101/gr.6101007 17620451
-
(2007)
Genome Res
, vol.17
, pp. 1170-1177
-
-
Peckham, H.E.1
Thurman, R.E.2
Fu, Y.3
Stamatoyannopoulos, J.A.4
Noble, W.S.5
Struhl, K.6
Weng, Z.7
-
11
-
-
68249142923
-
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
-
10.1038/nsmb.1636. 19620965
-
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Y Zhang Z Moqtaderi BP Rattner G Euskirchen M Snyder JT Kadonaga XS Liu K Struhl, Nat Struct Mol Biol 2009 16 847 852 10.1038/nsmb.1636 19620965
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 847-852
-
-
Zhang, Y.1
Moqtaderi, Z.2
Rattner, B.P.3
Euskirchen, G.4
Snyder, M.5
Kadonaga, J.T.6
Liu, X.S.7
Struhl, K.8
-
12
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
10.1038/nature07667. 19092803
-
The DNA-encoded nucleosome organization of a eukaryotic genome. N Kaplan IK Moore Y Fondufe-Mittendorf AJ Gossett D Tillo Y Field EM LeProust TR Hughes JD Lieb J Widom E Segal, Nature 2009 458 362 366 10.1038/nature07667 19092803
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
Moore, I.K.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
Field, Y.6
LeProust, E.M.7
Hughes, T.R.8
Lieb, J.D.9
Widom, J.10
Segal, E.11
-
14
-
-
11844299709
-
A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone
-
10.1016/j.jmb.2004.10.075. 15644197
-
A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone. VA Huynh PJ Robinson D Rhodes, J Mol Biol 2005 345 957 968 10.1016/j.jmb.2004.10. 075 15644197
-
(2005)
J Mol Biol
, vol.345
, pp. 957-968
-
-
Huynh, V.A.1
Robinson, P.J.2
Rhodes, D.3
-
15
-
-
77949548012
-
The histone chaperone Nap1 promotes nucleosome assembly by eliminating nonnucleosomal histone DNA interactions
-
10.1016/j.molcel.2010.01.037. 20347425
-
The histone chaperone Nap1 promotes nucleosome assembly by eliminating nonnucleosomal histone DNA interactions. AJ Andrews X Chen A Zevin LA Stargell K Luger, Mol Cell 2010 37 834 842 10.1016/j.molcel.2010.01.037 20347425
-
(2010)
Mol Cell
, vol.37
, pp. 834-842
-
-
Andrews, A.J.1
Chen, X.2
Zevin, A.3
Stargell, L.A.4
Luger, K.5
-
16
-
-
72949099668
-
Dynamics of nucleosome remodelling by individual ACF complexes
-
10.1038/nature08627. 20033040
-
Dynamics of nucleosome remodelling by individual ACF complexes. TR Blosser JG Yang MD Stone GJ Narlikar X Zhuang, Nature 2009 462 1022 1027 10.1038/nature08627 20033040
-
(2009)
Nature
, vol.462
, pp. 1022-1027
-
-
Blosser, T.R.1
Yang, J.G.2
Stone, M.D.3
Narlikar, G.J.4
Zhuang, X.5
-
17
-
-
72949099482
-
The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes
-
10.1038/nature08621. 20033039
-
The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. LR Racki JG Yang N Naber PD Partensky A Acevedo TJ Purcell R Cooke Y Cheng GJ Narlikar, Nature 2009 462 1016 1021 10.1038/nature08621 20033039
-
(2009)
Nature
, vol.462
, pp. 1016-1021
-
-
Racki, L.R.1
Yang, J.G.2
Naber, N.3
Partensky, P.D.4
Acevedo, A.5
Purcell, T.J.6
Cooke, R.7
Cheng, Y.8
Narlikar, G.J.9
-
18
-
-
0032805251
-
Hydrodynamics-based transfection in animals by systemic administration of plasmid DNA
-
10.1038/sj.gt.3300947. 10455434
-
Hydrodynamics-based transfection in animals by systemic administration of plasmid DNA. F Liu Y Song D Liu, Gene Ther 1999 6 1258 1266 10.1038/sj.gt.3300947 10455434
-
(1999)
Gene Ther
, vol.6
, pp. 1258-1266
-
-
Liu, F.1
Song, Y.2
Liu, D.3
-
19
-
-
0033166561
-
High levels of foreign gene expression in hepatocytes after tail vein injections of naked plasmid DNA
-
10.1089/10430349950017734. 10428218
-
High levels of foreign gene expression in hepatocytes after tail vein injections of naked plasmid DNA. G Zhang V Budker JA Wolff, Hum Gene Ther 1999 10 1735 1737 10.1089/10430349950017734 10428218
-
(1999)
Hum Gene Ther
, vol.10
, pp. 1735-1737
-
-
Zhang, G.1
Budker, V.2
Wolff, J.A.3
-
20
-
-
39849089752
-
Silencing of episomal transgene expression in liver by plasmid bacterial backbone DNA is independent of CpG methylation
-
10.1038/sj.mt.6300399. 18253155
-
Silencing of episomal transgene expression in liver by plasmid bacterial backbone DNA is independent of CpG methylation. ZY Chen E Riu CY He H Xu MA Kay, Mol Ther 2008 16 548 556 10.1038/sj.mt.6300399 18253155
-
(2008)
Mol Ther
, vol.16
, pp. 548-556
-
-
Chen, Z.Y.1
Riu, E.2
He, C.Y.3
Xu, H.4
Kay, M.A.5
-
21
-
-
0017358203
-
Action of micrococcal nuclease on chromatin and the location of histone H1
-
10.1016/S0022-2836(77)80019-3. 833849
-
Action of micrococcal nuclease on chromatin and the location of histone H1. M Noll RD Kornberg, J Mol Biol 1977 109 393 404 10.1016/S0022-2836(77)80019- 3 833849
-
(1977)
J Mol Biol
, vol.109
, pp. 393-404
-
-
Noll, M.1
Kornberg, R.D.2
-
22
-
-
43749099875
-
Nucleosome organization in the Drosophila genome
-
10.1038/nature06929. 18408708
-
Nucleosome organization in the Drosophila genome. TN Mavrich C Jiang IP Ioshikhes X Li BJ Venters SJ Zanton LP Tomsho J Qi RL Glaser SC Schuster DS Gilmour I Albert BF Pugh, Nature 2008 453 358 362 10.1038/nature06929 18408708
-
(2008)
Nature
, vol.453
, pp. 358-362
-
-
Mavrich, T.N.1
Jiang, C.2
Ioshikhes, I.P.3
Li, X.4
Venters, B.J.5
Zanton, S.J.6
Tomsho, L.P.7
Qi, J.8
Glaser, R.L.9
Schuster, S.C.10
Gilmour, D.S.11
Albert, I.12
Pugh, B.F.13
-
23
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
10.1016/j.cell.2008.02.022. 18329373
-
Dynamic regulation of nucleosome positioning in the human genome. DE Schones K Cui S Cuddapah TY Roh A Barski Z Wang G Wei K Zhao, Cell 2008 132 887 898 10.1016/j.cell.2008.02.022 18329373
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
24
-
-
46449103738
-
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
-
10.1101/gr.076463.108. 18477713
-
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. A Valouev J Ichikawa T Tonthat J Stuart S Ranade H Peckham K Zeng JA Malek G Costa K McKernan A Sidow A Fire SM Johnson, Genome Res 2008 18 1051 1063 10.1101/gr.076463.108 18477713
-
(2008)
Genome Res
, vol.18
, pp. 1051-1063
-
-
Valouev, A.1
Ichikawa, J.2
Tonthat, T.3
Stuart, J.4
Ranade, S.5
Peckham, H.6
Zeng, K.7
Malek, J.A.8
Costa, G.9
McKernan, K.10
Sidow, A.11
Fire, A.12
Johnson, S.M.13
-
25
-
-
58449116917
-
Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites
-
10.1126/science.1163183. 19074313
-
Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. S Sasaki CC Mello A Shimada Y Nakatani S Hashimoto M Ogawa K Matsushima SG Gu M Kasahara B Ahsan A Sasaki T Saito Y Suzuki S Sugano Y Kohara H Takeda A Fire S Morishita, Science 2009 323 401 404 10.1126/science.1163183 19074313
-
(2009)
Science
, vol.323
, pp. 401-404
-
-
Sasaki, S.1
Mello, C.C.2
Shimada, A.3
Nakatani, Y.4
Hashimoto, S.5
Ogawa, M.6
Matsushima, K.7
Gu, S.G.8
Kasahara, M.9
Ahsan, B.10
Sasaki, A.11
Saito, T.12
Suzuki, Y.13
Sugano, S.14
Kohara, Y.15
Takeda, H.16
Fire, A.17
Morishita, S.18
-
26
-
-
68349125112
-
What controls nucleosome positions?
-
10.1016/j.tig.2009.06.002. 19596482
-
What controls nucleosome positions? E Segal J Widom, Trends Genet 2009 25 335 343 10.1016/j.tig.2009.06.002 19596482
-
(2009)
Trends Genet
, vol.25
, pp. 335-343
-
-
Segal, E.1
Widom, J.2
-
27
-
-
0019888118
-
Sequence specific cleavage of DNA by micrococcal nuclease
-
10.1093/nar/9.12.2643. 7279658
-
Sequence specific cleavage of DNA by micrococcal nuclease. W Horz W Altenburger, Nucleic Acids Res 1981 9 2643 2658 10.1093/nar/9.12.2643 7279658
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 2643-2658
-
-
Horz, W.1
Altenburger, W.2
-
28
-
-
0019888109
-
High sequence specificity of micrococcal nuclease
-
10.1093/nar/9.12.2659. 6269057
-
High sequence specificity of micrococcal nuclease. C Dingwall GP Lomonossoff RA Laskey, Nucleic Acids Res 1981 9 2659 2673 10.1093/nar/9.12.2659 6269057
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 2659-2673
-
-
Dingwall, C.1
Lomonossoff, G.P.2
Laskey, R.A.3
-
30
-
-
33845298285
-
Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin
-
10.1101/gr.5560806. 17038564
-
Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin. SM Johnson FJ Tan HL McCullough DP Riordan AZ Fire, Genome Res 2006 16 1505 1516 10.1101/gr.5560806 17038564
-
(2006)
Genome Res
, vol.16
, pp. 1505-1516
-
-
Johnson, S.M.1
Tan, F.J.2
McCullough, H.L.3
Riordan, D.P.4
Fire, A.Z.5
-
31
-
-
34250739823
-
Histone modifications are associated with the persistence or silencing of vector-mediated transgene expression in vivo
-
10.1038/sj.mt.6300177. 17457320
-
Histone modifications are associated with the persistence or silencing of vector-mediated transgene expression in vivo. E Riu ZY Chen H Xu CY He MA Kay, Mol Ther 2007 15 1348 1355 10.1038/sj.mt.6300177 17457320
-
(2007)
Mol Ther
, vol.15
, pp. 1348-1355
-
-
Riu, E.1
Chen, Z.Y.2
Xu, H.3
He, C.Y.4
Kay, M.A.5
-
32
-
-
0034993252
-
Linear DNAs concatemerize in vivo and result in sustained transgene expression in mouse liver
-
10.1006/mthe.2001.0278. 11273783
-
Linear DNAs concatemerize in vivo and result in sustained transgene expression in mouse liver. ZY Chen SR Yant CY He L Meuse S Shen MA Kay, Mol Ther 2001 3 403 410 10.1006/mthe.2001.0278 11273783
-
(2001)
Mol Ther
, vol.3
, pp. 403-410
-
-
Chen, Z.Y.1
Yant, S.R.2
He, C.Y.3
Meuse, L.4
Shen, S.5
Kay, M.A.6
-
33
-
-
2642519089
-
Silencing of episomal transgene expression by plasmid bacterial DNA elements in vivo
-
10.1038/sj.gt.3302231. 15029228
-
Silencing of episomal transgene expression by plasmid bacterial DNA elements in vivo. ZY Chen CY He L Meuse MA Kay, Gene Ther 2004 11 856 864 10.1038/sj.gt.3302231 15029228
-
(2004)
Gene Ther
, vol.11
, pp. 856-864
-
-
Chen, Z.Y.1
He, C.Y.2
Meuse, L.3
Kay, M.A.4
-
34
-
-
0029916598
-
Successful expression of human factor IX following repeat administration of adenoviral vector in mice
-
10.1073/pnas.93.7.3056. 8610167
-
Successful expression of human factor IX following repeat administration of adenoviral vector in mice. J Walter Q You JN Hagstrom M Sands KA High, Proc Natl Acad Sci USA 1996 93 3056 3061 10.1073/pnas.93.7.3056 8610167
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 3056-3061
-
-
Walter, J.1
You, Q.2
Hagstrom, J.N.3
Sands, M.4
High, K.A.5
-
35
-
-
50849090969
-
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
-
10.1038/nmeth.1246
-
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. A Valouev DS Johnson A Sundquist C Medina E Anton S Batzoglou RM Myers A Sidow, Nat Meth 2008 5 829 834 10.1038/nmeth.1246
-
(2008)
Nat Meth
, vol.5
, pp. 829-834
-
-
Valouev, A.1
Johnson, D.S.2
Sundquist, A.3
Medina, C.4
Anton, E.5
Batzoglou, S.6
Myers, R.M.7
Sidow, A.8
|