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Volumn 267, Issue 4, 1997, Pages 807-817

Identification and characterization of genomic nucleosome-positioning sequences

Author keywords

Centromeres; Chromatin; Nucleosome; Positioning; Stability

Indexed keywords

ADENINE NUCLEOTIDE; DNA;

EID: 0031564633     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.0916     Document Type: Article
Times cited : (167)

References (54)
  • 1
    • 0011202428 scopus 로고    scopus 로고
    • Structural variations observed in DNA crystal structures and their implications for protein-DNA interactions
    • Schenectady, NY: Adenine Press
    • Bansal M. Structural variations observed in DNA crystal structures and their implications for protein-DNA interactions. Biological Structure and Dynamics, Proceedings of the Ninth Conversation. 1996;Adenine Press, Schenectady, NY.
    • (1996) Biological Structure and Dynamics, Proceedings of the Ninth Conversation
    • Bansal, M.1
  • 2
    • 0029988809 scopus 로고    scopus 로고
    • An intriguing new lead on Huntington's disease
    • Barinaga M. An intriguing new lead on Huntington's disease. Science. 271:1996;1233-1234.
    • (1996) Science , vol.271 , pp. 1233-1234
    • Barinaga, M.1
  • 5
    • 0020385863 scopus 로고
    • Mechanics of sequence-dependent stacking of bases in B-DNA
    • Calladine C. R. Mechanics of sequence-dependent stacking of bases in B-DNA. J. Mol. Biol. 161:1982;343-352.
    • (1982) J. Mol. Biol. , vol.161 , pp. 343-352
    • Calladine, C.R.1
  • 6
    • 0023010371 scopus 로고
    • Allosteric conversion of Z DNA to an intercalated right-handed conformation by daunomycin
    • Chaires J. B. Allosteric conversion of Z DNA to an intercalated right-handed conformation by daunomycin. J. Biol. Chem. 261:1986;8899-8907.
    • (1986) J. Biol. Chem. , vol.261 , pp. 8899-8907
    • Chaires, J.B.1
  • 7
    • 0023494886 scopus 로고
    • A bifurcated hydrogen bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin
    • Coll M., Fredrick C. A., Wang A. H., Rich A. A bifurcated hydrogen bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin. Proc. Natl Acad. Sci. USA. 84:1987;8385-8389.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 8385-8389
    • Coll, M.1    Fredrick, C.A.2    Wang, A.H.3    Rich, A.4
  • 9
    • 0027203669 scopus 로고
    • A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend
    • DiGabriele A. D., Steitz T. A. A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend. J. Mol. Biol. 231:1993;1024-1039.
    • (1993) J. Mol. Biol. , vol.231 , pp. 1024-1039
    • Digabriele, A.D.1    Steitz, T.A.2
  • 10
    • 0008123541 scopus 로고
    • Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract
    • DiGabriele A. D., Sanderson M. R., Steitz T. A. Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract. Proc. Natl Acad. Sci. USA. 86:1989;1816-1820.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 1816-1820
    • Digabriele, A.D.1    Sanderson, M.R.2    Steitz, T.A.3
  • 11
    • 0029561095 scopus 로고
    • Bending and torsional flexibility of G/C-rich sequences as determined by cyclization assays
    • Dlakic M., Harrington R. E. Bending and torsional flexibility of G/C-rich sequences as determined by cyclization assays. J. Biol. Chem. 270:1995;29945-29952.
    • (1995) J. Biol. Chem. , vol.270 , pp. 29945-29952
    • Dlakic, M.1    Harrington, R.E.2
  • 12
    • 0026329869 scopus 로고
    • Helical repeat and chirality effects on DNA gel electrophoretic mobility
    • Drak J., Crothers D. M. Helical repeat and chirality effects on DNA gel electrophoretic mobility. Proc. Natl Acad. Sci. USA. 88:1991;3074-3078.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 3074-3078
    • Drak, J.1    Crothers, D.M.2
  • 13
    • 0022230224 scopus 로고
    • DNA bending and its relation to nucleosome positioning
    • Drew H. R., Travers A. A. DNA bending and its relation to nucleosome positioning. J. Mol. Biol. 186:1985;773-790.
    • (1985) J. Mol. Biol. , vol.186 , pp. 773-790
    • Drew, H.R.1    Travers, A.A.2
  • 15
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington A. D., Szostak J. W. In vitro selection of RNA molecules that bind specific ligands. Nature. 346:1990;818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 16
    • 0026599021 scopus 로고
    • Chromatin as an essential part of the transcriptional mechanism
    • Felsenfeld G. Chromatin as an essential part of the transcriptional mechanism. Nature. 355:1992;219-224.
    • (1992) Nature , vol.355 , pp. 219-224
    • Felsenfeld, G.1
  • 17
    • 0024300174 scopus 로고
    • DNA sequence determinants of CAP-induced bending and protein binding affinity
    • Gartenberg M. R., Crothers D. M. DNA sequence determinants of CAP-induced bending and protein binding affinity. Nature. 333:1988;824-829.
    • (1988) Nature , vol.333 , pp. 824-829
    • Gartenberg, M.R.1    Crothers, D.M.2
  • 18
    • 17544367055 scopus 로고    scopus 로고
    • Nucleosome assembly on CTG triplet repeats
    • Godde J. S., Wolffe A. P. Nucleosome assembly on CTG triplet repeats. J. Biol. Chem. 271:1996;15222-15229.
    • (1996) J. Biol. Chem. , vol.271 , pp. 15222-15229
    • Godde, J.S.1    Wolffe, A.P.2
  • 19
    • 0028073817 scopus 로고
    • Sequence elements responsible for DNA curvature
    • Haran T. E., Kahn J. D., Crothers D. M. Sequence elements responsible for DNA curvature. J. Mol. Biol. 244:1994;135-143.
    • (1994) J. Mol. Biol. , vol.244 , pp. 135-143
    • Haran, T.E.1    Kahn, J.D.2    Crothers, D.M.3
  • 20
    • 0027327815 scopus 로고
    • Studies of DNA bending and flexibility using gel electrophoresis
    • Harrington R. E. Studies of DNA bending and flexibility using gel electrophoresis. Electrophoresis. 14:1993;732-746.
    • (1993) Electrophoresis , vol.14 , pp. 732-746
    • Harrington, R.E.1
  • 22
    • 0027480960 scopus 로고
    • Cell. 72:1993;971-983.
    • (1993) Cell , vol.72 , pp. 971-983
  • 23
    • 0028068714 scopus 로고
    • Facilitated binding of TATA-binding protein to nucleosomal DNA
    • Imbalzano A. N., Kwon H., Green M. R., Kingston R. E. Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature. 370:1994;481-485.
    • (1994) Nature , vol.370 , pp. 481-485
    • Imbalzano, A.N.1    Kwon, H.2    Green, M.R.3    Kingston, R.E.4
  • 24
    • 0027763551 scopus 로고
    • Sequence dependence of 4′,6-diamidino-2-phenylindole (DAPI)-DNA interactions
    • Jansen K., Nordén B., Kubista M. Sequence dependence of 4′,6-diamidino-2-phenylindole (DAPI)-DNA interactions. J. Am. Chem. Soc. 115:1993;10527-10530.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 10527-10530
    • Jansen, K.1    Nordén, B.2    Kubista, M.3
  • 25
    • 0027504913 scopus 로고
    • Crystal structure of a yeast TBP/TATA-box complex
    • Kim Y., Geiger J. H., Hahn S., Siegler P. B. Crystal structure of a yeast TBP/TATA-box complex. Nature. 365:1993a;512-520.
    • (1993) Nature , vol.365 , pp. 512-520
    • Kim, Y.1    Geiger, J.H.2    Hahn, S.3    Siegler, P.B.4
  • 26
    • 0027483012 scopus 로고
    • Co-crystal structure of TBP recognizing the minor groove of a TATA element
    • Kim Y., Nikolov D. B., Siegler P. B. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365:1993b;520-527.
    • (1993) Nature , vol.365 , pp. 520-527
    • Kim, Y.1    Nikolov, D.B.2    Siegler, P.B.3
  • 27
    • 0028217411 scopus 로고
    • Mouse centromere mapping using oligonucleotide probes that detect variants of the minor satellite
    • Kipling D., Wilson H. E., Mitchell A. R., Taylor B. A., Cooke H. J. Mouse centromere mapping using oligonucleotide probes that detect variants of the minor satellite. Chromosoma. 103:1994;46-55.
    • (1994) Chromosoma , vol.103 , pp. 46-55
    • Kipling, D.1    Wilson, H.E.2    Mitchell, A.R.3    Taylor, B.A.4    Cooke, H.J.5
  • 28
    • 0028871185 scopus 로고
    • Analysis of protein-DNA and protein-protein interactions of the centromere protein B (CENP-B) and properties of the DNA-CENP-B complex in the cell cycle
    • Kitagawa K., Masumoto H., Ikeda M., Okazaki T. Analysis of protein-DNA and protein-protein interactions of the centromere protein B (CENP-B) and properties of the DNA-CENP-B complex in the cell cycle. Mol. Cell. Biol. 15:1995;1602-1612.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 1602-1612
    • Kitagawa, K.1    Masumoto, H.2    Ikeda, M.3    Okazaki, T.4
  • 29
    • 0022477409 scopus 로고
    • DNA bending at adenine-thymine tracts
    • Koo H.-S., Wu H.-M., Crothers D. M. DNA bending at adenine-thymine tracts. Nature. 320:1986;501-506.
    • (1986) Nature , vol.320 , pp. 501-506
    • Koo, H.-S.1    Wu, H.-M.2    Crothers, D.M.3
  • 30
    • 0022412611 scopus 로고
    • Structural transitions of chromatin at low salt concentrations: A flow linear dichroism study
    • Kubista M., Härd T., Nielsen P. E., Nordén B. Structural transitions of chromatin at low salt concentrations: a flow linear dichroism study. Biochemistry. 24:1985;6336-6342.
    • (1985) Biochemistry , vol.24 , pp. 6336-6342
    • Kubista, M.1    Härd, T.2    Nielsen, P.E.3    Nordén, B.4
  • 31
    • 0027973041 scopus 로고
    • Chromatin and gene expression: Constant questions, but changing answers
    • Lewin B. Chromatin and gene expression: constant questions, but changing answers. Cell. 79:1994;397-406.
    • (1994) Cell , vol.79 , pp. 397-406
    • Lewin, B.1
  • 32
    • 0025681521 scopus 로고
    • Correlation between dinucleotide periodicities and nucleosome positioning on mouse satellite DNA
    • Lowman H., Bina M. Correlation between dinucleotide periodicities and nucleosome positioning on mouse satellite DNA. Biopolymers. 30:1990;861-876.
    • (1990) Biopolymers , vol.30 , pp. 861-876
    • Lowman, H.1    Bina, M.2
  • 34
    • 0020424028 scopus 로고
    • Methotrexate resistance and double minutes in a cell line from the SEWA mouse ascites tumor
    • Martinsson T., Tenning P., Lundh L., Levan G. Methotrexate resistance and double minutes in a cell line from the SEWA mouse ascites tumor. Hereditas. 97:1982;123-137.
    • (1982) Hereditas , vol.97 , pp. 123-137
    • Martinsson, T.1    Tenning, P.2    Lundh, L.3    Levan, G.4
  • 35
    • 0024442796 scopus 로고
    • A human centromere antigen (CENP-B) interacts with a short specific sequence in alphoid DNA, a human centromeric satellite
    • Masumoto H., Masukata H., Muro Y., Nozaki N., Okazaki T. A human centromere antigen (CENP-B) interacts with a short specific sequence in alphoid DNA, a human centromeric satellite. J. Cell. Biol. 109:1989;1963-1973.
    • (1989) J. Cell. Biol. , vol.109 , pp. 1963-1973
    • Masumoto, H.1    Masukata, H.2    Muro, Y.3    Nozaki, N.4    Okazaki, T.5
  • 36
    • 0016175370 scopus 로고
    • Theoretical aspects of DNA-protein interactions: Co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice
    • McGhee J. D., von Hippel P. H. Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice. J. Mol. Biol. 86:1974;469-489.
    • (1974) J. Mol. Biol. , vol.86 , pp. 469-489
    • McGhee, J.D.1    Von Hippel, P.H.2
  • 37
    • 0028053165 scopus 로고
    • DNA sequence organization in chromatosomes
    • Muyldermans S., Travers A. A. DNA sequence organization in chromatosomes. J. Mol. Biol. 235:1994;855-870.
    • (1994) J. Mol. Biol. , vol.235 , pp. 855-870
    • Muyldermans, S.1    Travers, A.A.2
  • 38
    • 0023513912 scopus 로고
    • The structure of an oligo(dA).oligo(dT) tract and its biological implications
    • Nelson H. C., Finch J. T., Luisi B. F., Klug A. The structure of an oligo(dA).oligo(dT) tract and its biological implications. Nature. 330:1987;221-226.
    • (1987) Nature , vol.330 , pp. 221-226
    • Nelson, H.C.1    Finch, J.T.2    Luisi, B.F.3    Klug, A.4
  • 39
    • 0016750270 scopus 로고
    • Percent satellite DNA as a function of tissue and age of mice
    • Prashad N., Cutler R. G. Percent satellite DNA as a function of tissue and age of mice. Biochim. Biophys. Acta. 418:1976;1-23.
    • (1976) Biochim. Biophys. Acta , vol.418 , pp. 1-23
    • Prashad, N.1    Cutler, R.G.2
  • 40
    • 0018372296 scopus 로고
    • Nucleosome cores reconstituted from poly (dA-dT) and the octamer of histones
    • Rhodes D. Nucleosome cores reconstituted from poly (dA-dT) and the octamer of histones. Nucl. Acids Res. 6:1979;1805-1816.
    • (1979) Nucl. Acids Res. , vol.6 , pp. 1805-1816
    • Rhodes, D.1
  • 41
    • 0022427801 scopus 로고
    • Structural analysis of a triple complex between the histone octamer, a Xenopus gene for 5S RNA and transcription factor IIIA
    • Rhodes D. Structural analysis of a triple complex between the histone octamer, a Xenopus gene for 5S RNA and transcription factor IIIA. EMBO J. 4:1985;3473-3482.
    • (1985) EMBO J. , vol.4 , pp. 3473-3482
    • Rhodes, D.1
  • 42
    • 0021760689 scopus 로고
    • Structure of the nucleosome core particle at 7 Å resolution
    • Richmond T. J., Finch J. T., Rushton B., Rhodes D., Klug D. Structure of the nucleosome core particle at 7 Å resolution. Nature. 311:1984;532-537.
    • (1984) Nature , vol.311 , pp. 532-537
    • Richmond, T.J.1    Finch, J.T.2    Rushton, B.3    Rhodes, D.4    Klug, D.5
  • 43
    • 0028500560 scopus 로고
    • Long-range interactions between DNA-bound ligands
    • Samuelsson P., Jansen K., Kubista M. Long-range interactions between DNA-bound ligands. J. Mol. Recog. 7:1994;241-253.
    • (1994) J. Mol. Recog. , vol.7 , pp. 241-253
    • Samuelsson, P.1    Jansen, K.2    Kubista, M.3
  • 44
    • 0023001414 scopus 로고
    • Sequence periodicities in chicken nucleosome core DNA
    • Satchwell S. C., Drew H. R., Travers A. A. Sequence periodicities in chicken nucleosome core DNA. J. Mol. Biol. 191:1986;659-675.
    • (1986) J. Mol. Biol. , vol.191 , pp. 659-675
    • Satchwell, S.C.1    Drew, H.R.2    Travers, A.A.3
  • 46
    • 0344688469 scopus 로고
    • A mammalian high mobility group protein recognizes any stretch of six A·T base pairs in duplex DNA
    • Solomon M. J., Strauss F., Varshavsky A. A mammalian high mobility group protein recognizes any stretch of six A·T base pairs in duplex DNA. Proc. Natl Acad. Sci. USA. 83:1986;1276-1280.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 1276-1280
    • Solomon, M.J.1    Strauss, F.2    Varshavsky, A.3
  • 47
    • 0001415964 scopus 로고
    • The pitch of chromatin is reflected in its nucleotide sequence
    • Trifonov E. N., Sussman J. L. The pitch of chromatin is reflected in its nucleotide sequence. Proc. Natl Acad. Sci. USA. 77:1980;3816-3820.
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 3816-3820
    • Trifonov, E.N.1    Sussman, J.L.2
  • 48
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C., Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science. 249:1990;505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 49
    • 0028932050 scopus 로고
    • Expanded CTG triplet blocks from the myotonic dystrophy gene create the strongest known natural nucleosome positioning elements
    • Wang Y.-H., Griffith J. Expanded CTG triplet blocks from the myotonic dystrophy gene create the strongest known natural nucleosome positioning elements. Genomics. 25:1995;570-573.
    • (1995) Genomics , vol.25 , pp. 570-573
    • Wang, Y.-H.1    Griffith, J.2
  • 50
    • 0027941198 scopus 로고
    • Preferential nucleosome assembly at DNA triplet repeats from the myotonic dystrophy gene
    • Wang Y.-H., Amirhaeri S., Kang S., Wells R. D., Griffith J. D. Preferential nucleosome assembly at DNA triplet repeats from the myotonic dystrophy gene. Science. 265:1994;1709-1712.
    • (1994) Science , vol.265 , pp. 1709-1712
    • Wang, Y.-H.1    Amirhaeri, S.2    Kang, S.3    Wells, R.D.4    Griffith, J.D.5
  • 51
    • 0028236523 scopus 로고
    • Transcription: In tune with the histones
    • Wolffe A. P. Transcription: in tune with the histones. Cell. 77:1994;13-17.
    • (1994) Cell , vol.77 , pp. 13-17
    • Wolffe, A.P.1
  • 52
    • 0024253390 scopus 로고
    • Sequence organization and cytological localization of the minor satellite of mouse
    • Wong A. K. C., Rattner J. B. Sequence organization and cytological localization of the minor satellite of mouse. Nucl. Acids Res. 16:1988;11645-11661.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 11645-11661
    • Wong, A.K.C.1    Rattner, J.B.2
  • 53
    • 0021268779 scopus 로고
    • The locus of sequence-directed and protein-induced DNA bending
    • Wu H.-M., Crothers D. M. The locus of sequence-directed and protein-induced DNA bending. Nature. 308:1984;509-513.
    • (1984) Nature , vol.308 , pp. 509-513
    • Wu, H.-M.1    Crothers, D.M.2
  • 54
    • 0023218540 scopus 로고
    • DNA bend direction by phase sensitive detection
    • Zinkel S. S., Crothers D. M. DNA bend direction by phase sensitive detection. Nature. 328:1987;178-181.
    • (1987) Nature , vol.328 , pp. 178-181
    • Zinkel, S.S.1    Crothers, D.M.2


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