메뉴 건너뛰기




Volumn 38, Issue 12, 2010, Pages 4040-4051

Spt4/5 stimulates transcription elongation through the RNA polymerase clamp coiled-coil motif

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; HUMAN; HUMAN CELL; PRIORITY JOURNAL; RNA TRANSLATION; AMINO ACID SEQUENCE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; GENETIC TRANSCRIPTION; HYDROPHOBICITY; METABOLISM; METHANOCOCCUS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROTEIN MOTIF; PROTEIN TERTIARY STRUCTURE; X RAY CRYSTALLOGRAPHY;

EID: 77955059733     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq135     Document Type: Article
Times cited : (134)

References (52)
  • 1
    • 44649086378 scopus 로고    scopus 로고
    • Structural evolution of multisubunit RNA polymerases
    • Werner, F. (2008) Structural evolution of multisubunit RNA polymerases. Trends Microbiol., 16, 247-250.
    • (2008) Trends Microbiol. , vol.16 , pp. 247-250
    • Werner, F.1
  • 2
    • 77449091060 scopus 로고    scopus 로고
    • Molecular mechanisms of RNA polymerase-the F/E (RPB4/7) complex is required for high processivity in vitro
    • Hirtreiter, A., Grohmann, D. and Werner, F. (2009) Molecular mechanisms of RNA polymerase-the F/E (RPB4/7) complex is required for high processivity in vitro. Nucleic Acids Res., 38, 585-596.
    • (2009) Nucleic Acids Res. , vol.38 , pp. 585-596
    • Hirtreiter, A.1    Grohmann, D.2    Werner, F.3
  • 3
    • 33846914726 scopus 로고    scopus 로고
    • The regulatory roles and mechanism of transcriptional pausing
    • Landick, R. (2006) The regulatory roles and mechanism of transcriptional pausing. Biochem. Soc. Trans., 34, 1062-1066.
    • (2006) Biochem. Soc. Trans. , vol.34 , pp. 1062-1066
    • Landick, R.1
  • 5
    • 0037382227 scopus 로고    scopus 로고
    • Transcription elongation by RNA polymerase II
    • Hartzog, G.A. (2003) Transcription elongation by RNA polymerase II. Curr. Opin. Genet. Dev., 13, 119-126.
    • (2003) Curr. Opin. Genet. Dev. , vol.13 , pp. 119-126
    • Hartzog, G.A.1
  • 6
    • 14844329013 scopus 로고    scopus 로고
    • Bacterial transcription elongation factors: new insights into molecular mechanism of action
    • Borukhov, S., Lee, J. and Laptenko, O. (2005) Bacterial transcription elongation factors: new insights into molecular mechanism of action. Mol. Microbiol., 55, 1315-1324.
    • (2005) Mol. Microbiol. , vol.55 , pp. 1315-1324
    • Borukhov, S.1    Lee, J.2    Laptenko, O.3
  • 7
    • 34548299670 scopus 로고    scopus 로고
    • Structure and function of archaeal RNA polymerases
    • Werner, F. (2007) Structure and function of archaeal RNA polymerases. Mol. Microbiol., 65, 1395-1404.
    • (2007) Mol. Microbiol. , vol.65 , pp. 1395-1404
    • Werner, F.1
  • 8
    • 55249117324 scopus 로고    scopus 로고
    • Core structure of the yeast spt4-spt5complex: a conserved module for regulation of transcription elongation
    • Guo, M., Xu, F., Yamada, J., Egelhofer, T., Gao, Y., Hartzog, G.A., Teng, M. and Niu, L. (2008) Core structure of the yeast spt4-spt5complex: a conserved module for regulation of transcription elongation. Structure, 16, 1649-1658.
    • (2008) Structure , vol.16 , pp. 1649-1658
    • Guo, M.1    Xu, F.2    Yamada, J.3    Egelhofer, T.4    Gao, Y.5    Hartzog, G.A.6    Teng, M.7    Niu, L.8
  • 9
    • 0030296854 scopus 로고    scopus 로고
    • KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins
    • Kyrpides, N.C., Woese, C.R. and Ouzounis, C.A. (1996) KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins. Trends Biochem. Sci., 21, 425-426.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 425-426
    • Kyrpides, N.C.1    Woese, C.R.2    Ouzounis, C.A.3
  • 10
    • 0342748478 scopus 로고    scopus 로고
    • Domains in the SPT5 protein that modulate its transcriptional regulatory properties
    • Ivanov, D., Kwak, Y.T., Guo, J. and Gaynor, R.B. (2000) Domains in the SPT5 protein that modulate its transcriptional regulatory properties. Mol. Cell Biol., 20, 2970-2983.
    • (2000) Mol. Cell Biol. , vol.20 , pp. 2970-2983
    • Ivanov, D.1    Kwak, Y.T.2    Guo, J.3    Gaynor, R.B.4
  • 11
    • 0032004953 scopus 로고    scopus 로고
    • Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae
    • Hartzog, G.A., Wada, T., Handa, H. and Winston, F. (1998) Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae. Genes Dev., 12, 357-369.
    • (1998) Genes Dev. , vol.12 , pp. 357-369
    • Hartzog, G.A.1    Wada, T.2    Handa, H.3    Winston, F.4
  • 12
    • 14444275279 scopus 로고    scopus 로고
    • DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs
    • Wada, T., Takagi, T., Yamaguchi, Y., Ferdous, A., Imai, T., Hirose, S., Sugimoto, S., Yano, K., Hartzog, G.A., Winston, F. et al. (1998) DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes Dev., 12, 343-356.
    • (1998) Genes Dev. , vol.12 , pp. 343-356
    • Wada, T.1    Takagi, T.2    Yamaguchi, Y.3    Ferdous, A.4    Imai, T.5    Hirose, S.6    Sugimoto, S.7    Yano, K.8    Hartzog, G.A.9    Winston, F.10
  • 13
    • 41349094797 scopus 로고    scopus 로고
    • Transcription regulation through promoter-proximal pausing of RNA polymerase II
    • Core, L.J. and Lis, J.T. (2008) Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science, 319, 1791-1792.
    • (2008) Science , vol.319 , pp. 1791-1792
    • Core, L.J.1    Lis, J.T.2
  • 14
    • 43049152845 scopus 로고    scopus 로고
    • Poised RNA polymerase II gives pause for thought
    • Margaritis, T. and Holstege, F.C. (2008) Poised RNA polymerase II gives pause for thought. Cell, 133, 581-584.
    • (2008) Cell , vol.133 , pp. 581-584
    • Margaritis, T.1    Holstege, F.C.2
  • 15
    • 0034691146 scopus 로고    scopus 로고
    • Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals
    • Artsimovitch, I. and Landick, R. (2000) Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals. Proc. Natl Acad. Sci. USA, 97, 7090-7095.
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 7090-7095
    • Artsimovitch, I.1    Landick, R.2
  • 16
    • 0028905513 scopus 로고
    • Escherichia coli NusG protein stimulates transcription elongation rates in vivo and in vitro
    • Burova, E., Hung, S.C., Sagitov, V., Stitt, B.L. and Gottesman, M.E. (1995) Escherichia coli NusG protein stimulates transcription elongation rates in vivo and in vitro. J. Bacteriol., 177, 1388-1392.
    • (1995) J. Bacteriol. , vol.177 , pp. 1388-1392
    • Burova, E.1    Hung, S.C.2    Sagitov, V.3    Stitt, B.L.4    Gottesman, M.E.5
  • 17
    • 67650676737 scopus 로고    scopus 로고
    • Two structurally independent domains of E. coli NusG create regulatory plasticity via distinct interactions with RNA polymerase and regulators
    • Mooney, R.A., Schweimer, K., Röch, P., Gottesman, M. and Landick, R. (2009) Two structurally independent domains of E. coli NusG create regulatory plasticity via distinct interactions with RNA polymerase and regulators. J. Mol. Biol., 391, 341-358.
    • (2009) J. Mol. Biol. , vol.391 , pp. 341-358
    • Mooney, R.A.1    Schweimer, K.2    Röch, P.3    Gottesman, M.4    Landick, R.5
  • 18
    • 0029076127 scopus 로고
    • NusG overexpression inhibits Rho-dependent termination in Escherichia coli
    • Burova, E. and Gottesman, M.E. (1995) NusG overexpression inhibits Rho-dependent termination in Escherichia coli. Mol. Microbiol., 17, 633-641.
    • (1995) Mol. Microbiol. , vol.17 , pp. 633-641
    • Burova, E.1    Gottesman, M.E.2
  • 19
    • 1342325469 scopus 로고    scopus 로고
    • In vivo effect of NusB and NusG on rRNA transcription antitermination
    • Torres, M., Balada, J.M., Zellars, M., Squires, C. and Squires, C.L. (2004) In vivo effect of NusB and NusG on rRNA transcription antitermination. J. Bacteriol., 186, 1304-1310.
    • (2004) J. Bacteriol. , vol.186 , pp. 1304-1310
    • Torres, M.1    Balada, J.M.2    Zellars, M.3    Squires, C.4    Squires, C.L.5
  • 22
    • 0037009445 scopus 로고    scopus 로고
    • Crystal structures of transcription factor NusG in light of its nucleic acid- and protein-binding activities
    • Steiner, T., Kaiser, J.T., Marinkovic, S., Huber, R. and Wahl, M.C. (2002) Crystal structures of transcription factor NusG in light of its nucleic acid- and protein-binding activities. EMBO J., 21, 4641-4653.
    • (2002) EMBO J. , vol.21 , pp. 4641-4653
    • Steiner, T.1    Kaiser, J.T.2    Marinkovic, S.3    Huber, R.4    Wahl, M.C.5
  • 23
    • 69249241850 scopus 로고    scopus 로고
    • The RNAP subunits F/E (RPB4/7) are stably associated with archaeal RNA polymerase - using fluorescence anisotropy to monitor RNAP assembly in vitro
    • Grohmann, D., Hirtreiter, A. and Werner, F. (2009) The RNAP subunits F/E (RPB4/7) are stably associated with archaeal RNA polymerase - using fluorescence anisotropy to monitor RNAP assembly in vitro. Biochem. J., 421, 339-343.
    • (2009) Biochem. J. , vol.421 , pp. 339-343
    • Grohmann, D.1    Hirtreiter, A.2    Werner, F.3
  • 24
    • 28544436370 scopus 로고    scopus 로고
    • Crystal structure and RNA binding of the Rpb4/Rpb7 subunits of human RNA polymerase II
    • Meka, H., Werner, F., Cordell, S.C., Onesti, S. and Brick, P. (2005) Crystal structure and RNA binding of the Rpb4/Rpb7 subunits of human RNA polymerase II. Nucleic Acids Res., 33, 6435-6444.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 6435-6444
    • Meka, H.1    Werner, F.2    Cordell, S.C.3    Onesti, S.4    Brick, P.5
  • 25
    • 10644284660 scopus 로고    scopus 로고
    • A fully recombinant system for activator-dependent archaeal transcription
    • Ouhammouch, M., Werner, F., Weinzierl, R.O. and Geiduschek, E.P. (2004) A fully recombinant system for activator-dependent archaeal transcription. J. Biol. Chem., 279, 51719-51721.
    • (2004) J. Biol. Chem. , vol.279 , pp. 51719-51721
    • Ouhammouch, M.1    Werner, F.2    Weinzierl, R.O.3    Geiduschek, E.P.4
  • 26
    • 0035930324 scopus 로고    scopus 로고
    • Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex
    • Todone, F., Brick, P., Werner, F., Weinzierl, R.O. and Onesti, S. (2001) Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex. Mol. Cell, 8, 1137-1143.
    • (2001) Mol. Cell. , vol.8 , pp. 1137-1143
    • Todone, F.1    Brick, P.2    Werner, F.3    Weinzierl, R.O.4    Onesti, S.5
  • 27
    • 0034326829 scopus 로고    scopus 로고
    • Archaeal RNA polymerase subunits F and P are bona fide homologs of eukaryotic RPB4 and RPB12
    • Werner, F., Eloranta, J.J. and Weinzierl, R.O. (2000) Archaeal RNA polymerase subunits F and P are bona fide homologs of eukaryotic RPB4 and RPB12. Nucleic Acids Res., 28, 4299-4305.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4299-4305
    • Werner, F.1    Eloranta, J.J.2    Weinzierl, R.O.3
  • 28
    • 0036753399 scopus 로고    scopus 로고
    • A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription
    • Werner, F. and Weinzierl, R.O. (2002) A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription. Mol. Cell, 10, 635-646.
    • (2002) Mol. Cell. , vol.10 , pp. 635-646
    • Werner, F.1    Weinzierl, R.O.2
  • 29
    • 24344504002 scopus 로고    scopus 로고
    • Direct modulation of RNA polymerase core functions by basal transcription factors
    • Werner, F. and Weinzierl, R.O. (2005) Direct modulation of RNA polymerase core functions by basal transcription factors. Mol. Cell Biol., 25, 8344-8355.
    • (2005) Mol. Cell Biol. , vol.25 , pp. 8344-8355
    • Werner, F.1    Weinzierl, R.O.2
  • 32
    • 68149163147 scopus 로고    scopus 로고
    • Crystal structure of NusG N-terminal (NGN) domain from Methanocaldococcus jannaschii and its interaction with rpoE
    • Zhou, H., Liu, Q., Gao, Y., Teng, M. and Niu, L. (2009) Crystal structure of NusG N-terminal (NGN) domain from Methanocaldococcus jannaschii and its interaction with rpoE. Proteins, 76, 787-793.
    • (2009) Proteins , vol.76 , pp. 787-793
    • Zhou, H.1    Liu, Q.2    Gao, Y.3    Teng, M.4    Niu, L.5
  • 33
  • 36
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali, A. and Blundell, T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815.
    • (1993) J. Mol. Biol. , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 38
    • 0029905349 scopus 로고    scopus 로고
    • Faithful chromosome transmission requires Spt4p, a putative regulator of chromatin structure in Saccharomyces cerevisiae
    • Basrai, M.A., Kingsbury, J., Koshland, D., Spencer, F. and Hieter, P. (1996) Faithful chromosome transmission requires Spt4p, a putative regulator of chromatin structure in Saccharomyces cerevisiae. Mol. Cell Biol., 16, 2838-2847.
    • (1996) Mol. Cell Biol. , vol.16 , pp. 2838-2847
    • Basrai, M.A.1    Kingsbury, J.2    Koshland, D.3    Spencer, F.4    Hieter, P.5
  • 39
    • 0027523232 scopus 로고
    • Molecular and genetic characterization of SPT4, a gene important for transcription initiation in Saccharomyces cerevisiae
    • Malone, E.A., Fassler, J.S. and Winston, F. (1993) Molecular and genetic characterization of SPT4, a gene important for transcription initiation in Saccharomyces cerevisiae. Mol. Gen. Genet., 237, 449-459.
    • (1993) Mol. Gen. Genet. , vol.237 , pp. 449-459
    • Malone, E.A.1    Fassler, J.S.2    Winston, F.3
  • 40
    • 73849136441 scopus 로고    scopus 로고
    • Crystal structure of the human transcription elongation factor DSIF hSpt4 subunit in complex with the hSpt5 dimerization interface
    • Wenzel, S., Martins, B.M., Rösch, P. and Wohrl, B.M. (2009) Crystal structure of the human transcription elongation factor DSIF hSpt4 subunit in complex with the hSpt5 dimerization interface. Biochem. J., 425, 373-380.
    • (2009) Biochem. J. , vol.425 , pp. 373-380
    • Wenzel, S.1    Martins, B.M.2    Rösch, P.3    Wohrl, B.M.4
  • 41
    • 0031302732 scopus 로고    scopus 로고
    • Assessment of comparative modeling in CASP2
    • Martin, A.C., MacArthur, M.W. and Thornton, J.M. (1997) Assessment of comparative modeling in CASP2. Proteins, (Suppl 1), 14-28.
    • (1997) Proteins , Issue.SUPPL 1 , pp. 14-28
    • Martin, A.C.1    MacArthur, M.W.2    Thornton, J.M.3
  • 43
    • 67649373354 scopus 로고    scopus 로고
    • Characterization of the Schizosaccharomyces pombe Spt5-Spt4 complex
    • Schwer, B., Schneider, S., Pei, Y., Aronova, A. and Shuman, S. (2009) Characterization of the Schizosaccharomyces pombe Spt5-Spt4 complex. RNA.
    • (2009) RNA
    • Schwer, B.1    Schneider, S.2    Pei, Y.3    Aronova, A.4    Shuman, S.5
  • 44
    • 57349097787 scopus 로고    scopus 로고
    • Genetic assays to define and characterize protein-protein interactions involved in gene regulation
    • Nickels, B.E. (2009) Genetic assays to define and characterize protein-protein interactions involved in gene regulation. Methods, 47, 53-62.
    • (2009) Methods , vol.47 , pp. 53-62
    • Nickels, B.E.1
  • 45
    • 33748767376 scopus 로고    scopus 로고
    • Rho-dependent terminators and transcription termination
    • Ciampi, M.S. (2006) Rho-dependent terminators and transcription termination. Microbiology, 152, 2515-2528.
    • (2006) Microbiology , vol.152 , pp. 2515-2528
    • Ciampi, M.S.1
  • 46
    • 0036713442 scopus 로고    scopus 로고
    • Novel domains and orthologues of eukaryotic transcription elongation factors
    • Ponting, C.P. (2002) Novel domains and orthologues of eukaryotic transcription elongation factors. Nucleic Acids Res., 30, 3643-3652.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3643-3652
    • Ponting, C.P.1
  • 47
    • 73049092277 scopus 로고    scopus 로고
    • Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex
    • Andrecka, J., Treutlein, B., Arcusa, M.A., Muschielok, A., Lewis, R., Cheung, A.C., Cramer, P. and Michaelis, J. (2009) Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex. Nucleic Acids Res., 37, 5803-5809.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 5803-5809
    • Andrecka, J.1    Treutlein, B.2    Arcusa, M.A.3    Muschielok, A.4    Lewis, R.5    Cheung, A.C.6    Cramer, P.7    Michaelis, J.8
  • 49
    • 72549083757 scopus 로고    scopus 로고
    • DSIF, the Paf1 complex, and Tat-SF1 have nonredundant, cooperative roles in RNA polymerase II elongation
    • Chen, Y., Yamaguchi, Y., Tsugeno, Y., Yamamoto, J., Yamada, T., Nakamura, M., Hisatake, K. and Handa, H. (2009) DSIF, the Paf1 complex, and Tat-SF1 have nonredundant, cooperative roles in RNA polymerase II elongation. Genes Dev., 23, 2765-2777.
    • (2009) Genes Dev. , vol.23 , pp. 2765-2777
    • Chen, Y.1    Yamaguchi, Y.2    Tsugeno, Y.3    Yamamoto, J.4    Yamada, T.5    Nakamura, M.6    Hisatake, K.7    Handa, H.8
  • 50
    • 56649106687 scopus 로고    scopus 로고
    • Analysis of factor interactions with RNA polymerase II elongation complexes using a new electrophoretic mobility shift assay
    • Cheng, B. and Price, D.H. (2008) Analysis of factor interactions with RNA polymerase II elongation complexes using a new electrophoretic mobility shift assay. Nucleic Acids Res., 36, e135.
    • (2008) Nucleic Acids Res. , vol.36
    • Cheng, B.1    Price, D.H.2
  • 52
    • 33748053333 scopus 로고    scopus 로고
    • RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing
    • Schneider, D.A., French, S.L., Osheim, Y.N., Bailey, A.O., Vu, L., Dodd, J., Yates, J.R., Beyer, A.L. and Nomura, M. (2006) RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing. Proc. Natl Acad. Sci. USA, 103, 12707-12712.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 12707-12712
    • Schneider, D.A.1    French, S.L.2    Osheim, Y.N.3    Bailey, A.O.4    Vu, L.5    Dodd, J.6    Yates, J.R.7    Beyer, A.L.8    Nomura, M.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.