Transcript expression and regulatory characteristics of a rice glycosyltransferase OsGT61-1 gene

Plant Science

Volumn 179, Issue 1-2, 2010, Pages 114-122

  Singh, Amanjot ^a   Singh, Upasana ^a   Mittal, Dheeraj ^a   Grover, Anil ^a  

^a UNIVERSITY OF DELHI   (India)

Author keywords

Glycosyltransferase; Miniature inverted repeat transposable element; Promoter analysis; Stress; Transcript expression.

Indexed keywords

EID: 77954862428     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2010.03.005     Document Type: Article

References (39)

1. Jones P., Vogt T. Glycosyltransferases in secondary plant metabolism: tranquilizers and stimulant controllers. Planta 2001, 213:164-174.
2. Ross J., Li Y., Lim E., Bowles D.J. Higher plant glycosyltransferases. Genome Biol. 2001, 2. REVIEWS3004.
3. Qu Y., Egelund J., Gilson P.R., Houghton F., Gleeson P.A., Schultz C.J., Bacic A. Identification of a novel group of putative Arabidopsis thaliana beta-(1,3)-galactosyltransferases. Plant Mol. Biol. 2008, 68:43-59.
4. Breton C., Snajdrova L., Jeanneau C., Koca J., Imberty A. Structures and mechanisms of glycosyltransferases. Glycobiology 2006, 16:29R-37R.
5. Jones P., Messner B., Nakajima J., Schaffner A.R., Saito K. UGT73C6 and UGT78D1, glycosyltransferases involved in flavonol glycoside biosynthesis in Arabidopsis thaliana. J. Biol. Chem. 2003, 278:43910-43918.
6. Gomord V., Wee E., Faye L. Protein retention and localization in the endoplasmic reticulum and the golgi apparatus. Biochimie 1999, 81:607-618.
7. Campbell J.A., Davies G.J., Bulone V., Henrissat B. A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities. Biochem. J. 1997, 326(Pt. 3):929-939.
8. Li Y., Baldauf S., Lim E.K., Bowles D.J. Phylogenetic analysis of the UDP-glycosyltransferase multigene family of Arabidopsis thaliana. J. Biol. Chem. 2001, 276:4338-4343.
9. Strasser R., Mucha J., Mach L., Altmann F., Wilson I.B., Glossl J., Steinkellner H. Molecular cloning and functional expression of beta1, 2-xylosyltransferase cDNA from Arabidopsis thaliana. FEBS Lett. 2000, 472:105-108.
10. Dirnberger D., Bencur P., Mach L., Steinkellner H. The Golgi localization of Arabidopsis thaliana beta1, 2-xylosyltransferase in plant cells is dependent on its cytoplasmic and transmembrane sequences. Plant Mol. Biol. 2002, 50:273-281.
11. Sado P.E., Tessier D., Vasseur M., Elmorjani K., Guillon F., Saulnier L. Integrating genes and phenotype: a wheat-Arabidopsis-rice glycosyltransferase database for candidate gene analyses. Funct. Integr. Genomics 2008.
12. Roberts M.R., Warner S.A.R., Darby R., Lim E., Draper J., Bowles D.J. Differential regulation of a glucosyltransferase gene homologue during defense responses in tobacco. J. Exp. Bot. 1999, 50:407-410.
13. Schaff J.E., Nielsen D.M., Smith C.P., Scholl E.H., Bird D.M. Comprehensive transcriptome profiling in tomato reveals a role for glycosyltransferase in Mi-mediated nematode resistance. Plant Physiol. 2007, 144:1079-1092.
14. Cao P., Bartley L.E., Jung K.H., Ronald P.C. Construction of a rice glycosyltransferase phylogenomic database and identification of rice-diverged glycosyltransferases. Mol. Plant. 2008, 1:858-877.
15. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
16. Higo K., Ugawa Y., Iwamoto M., Korenaga T. Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res. 1999, 27:297-300.
17. Letunic I., Copley R.R., Schmidt S., Ciccarelli F.D., Doerks T., Schultz J., Ponting C.P., Bork P. SMART 4.0: towards genomic data integration. Nucleic Acids Res. 2004, 32:D142-D144.
18. Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C.J., Ohtsuki K., Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashizume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y., Yasunishi A. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 2003, 301:376-379.
19. Bailey T.L., Williams N., Misleh C., Li W.W. MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 2006, 34:W369-W373.
20. Krogh A., Larsson B., von Heijne G., Sonnhammer E.L. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 2001, 305:567-580.
21. Emanuelsson O., Brunak S., von Heijne G., Nielsen H. Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2007, 2:953-971.
22. Mittal D., Chakrabarti S., Sarkar A., Singh A., Grover A. Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses. Plant Physiol. Biochem. 2009, 47:785-795.
23. Katiyar-Agarwal S., Agarwal M., Grover A. Heat-tolerant basmati rice engineered by over-expression of hsp101. Plant Mol. Biol. 2003, 51:677-686.
24. Sahi C., Agarwal M., Reddy M.K., Sopory S.K., Grover A. Isolation and expression analysis of salt stress-associated ESTs from contrasting rice cultivars using a PCR-based subtraction method. Theor. Appl. Genet. 2003, 106:620-638.
25. Sahi C., Singh A., Kumar K., Blumwald E., Grover A. Salt stress response in rice: genetics, molecular biology, and comparative genomics. Funct. Integr. Genomics 2006, 6:263-284.
26. Mitchell R.A., Dupree P., Shewry P.R. A novel bioinformatics approach identifies candidate genes for the synthesis and feruloylation of arabinoxylan. Plant Physiol. 2007, 144:43-53.
27. Hurst L.D., Williams E.J., Pal C. Natural selection promotes the conservation of linkage of co-expressed genes. Trends Genet. 2002, 18:604-606.
28. Jung K.H., Lee J., Dardick C., Seo Y.S., Cao P., Canlas P., Phetsom J., Xu X., Ouyang S., An K., Cho Y.J., Lee G.C., Lee Y., An G., Ronald P.C. Identification and functional analysis of light-responsive unique genes and gene family members in rice. PLoS Genet. 2008, 4:e1000164.
29. Leonard R., Kolarich D., Paschinger K., Altmann F., Wilson I.B. A genetic and structural analysis of the N-glycosylation capabilities. Plant Mol. Biol. 2004, 55:631-644.
30. Feschotte C., Jiang N., Wessler S.R. Plant transposable elements: where genetics meets genomics. Nat. Rev. Genet. 2002, 3:329-341.
31. Slotkin R.K., Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nat. Rev. Genet. 2007, 8:272-285.
32. Casacuberta J.M., Santiago N. Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes. Gene 2003, 311:1-11.
33. Jiang N., Bao Z., Zhang X., Eddy S.R., Wessler S.R. Pack-MULE transposable elements mediate gene evolution in plants. Nature 2004, 431:569-573.
34. Wicker T., Sabot F., Hua-Van A., Bennetzen J.L., Capy P., Chalhoub B., Flavell A., Leroy P., Morgante M., Panaud O., Paux E., SanMiguel P., Schulman A.H. A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet. 2007, 8:973-982.
35. Yang G., Nagel D.H., Feschotte C., Hancock C.N., Wessler S.R. Tuned for transposition: molecular determinants underlying the hyperactivity of a Stowaway MITE. Science 2009, 325:1391-1394.
36. Turcotte K., Srinivasan S., Bureau T. Survey of transposable elements from rice genomic sequences. Plant J. 2001, 25:169-179.
37. Oki N., Yano K., Okumoto Y., Tsukiyama T., Teraishi M., Tanisaka T. A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica. Genes Genet. Syst. 2008, 2008:321-329.
38. Yang G., Lee Y.H., Jiang Y., Shi X., Kertbundit S., Hall T.C. A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter. Plant Cell. 2005, 17:1559-1568.
39. Naito K., Cho E., Yang G., Campbell M.A., Yano K., Okumoto Y., Tanisaka T., Wessler S.R. Dramatic amplification of a rice transposable element during recent domestication. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:17620-17625.