Survey of transposable elements from rice genomic sequences

Plant Journal

Volumn 25, Issue 2, 2001, Pages 169-179

  Turcotte, K ^a   Srinivasan, S ^a   Bureau, T ^a  

^a MCGILL UNIVERSITY   (Canada)

Author keywords

Basho; Gene annotation; MITE; MULE; Stowaway; Tourist; Transposon

Indexed keywords

COMPUTER SIMULATION; GENOMIC DNA; HOST CELL; INVERTED TERMINAL REPEAT; MUTAGENIC AGENT; PLANT GENOME; TRANSPOSABLE ELEMENT; TRANSPOSASE;

BASE SEQUENCE; DNA TRANSPOSABLE ELEMENTS; DNA, COMPLEMENTARY; GENOME, PLANT; ORYZA SATIVA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

ACARI; ARABIDOPSIS; EMBRYOPHYTA; ORYZA SATIVA;

EID: 0035142211     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2001.00945.x     Document Type: Article

References (67)

1. Basic local alignment search tool
2. Matrix attachment regions and structural colinearity in the genomes of two grass species
3. The evolution of grass genome organisation and function
4. Grass genomes
5. The generation of Mutator transposable element subfamilies in maize
6. A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes
7. Tourist: A large family of small inverted repeat elements frequently associated with maize genes
8. Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grasses
9. Stowaway, a new family of inverted repeat elements associated with genes of both monocotyledonous and dicotyledonous plants
10. The Mu elements of Zea mays
11. Inter-MITE polymorphisms (IMP): A high throughput transposon-based genome mapping and fingerprinting approach
12. The evolutionary dynamics of repetitive DNA in eukaryotes
13. Genetic definition and sequence analysis of Arabidopsis centromeres
14. Mu1-related transposable elements of maize preferentially insert into low copy number DNA
15. The complete sequence of a heterochromatic island from a higher eukaryote
16. Evidence for horizontal transmission of the P transposable element between Drosophila species
17. Rice (Oryza sativa) centromeric regions consist of complex DNA
18. Sequence similarity of putative transposases links the maize Mutator autonomous elements and a group of bacterial insertion sequences
19. High gene density is conserved at syntenic loci of small and large grass genomes
20. The suppressor-mutator element and the evolutionary riddle of transposons
21. Transposable elements
22. Plant transposable elements and the genome
23. Retroelements in higher plants
24. Characterization of the major transcripts encoded by the regulatory MuDR transposable element of maize
25. Retrotransposition of a plant SINE into the wx locus during evolution of rice
26. Prokaryotic IS elements
27. Characterization of Soymar1, a Mariner element in soybean
28. Evidence for the recent horizontal transfer of long terminal repeat retrotransposon
29. Transposable elements as sources of variation in animals and plants
30. Transposable elements and host genome evolution
31. Repetitive DNA elements as a major component of plant genomes
32. Transposon diversity in Arabidopsis thaliana
33. An abundant LINE-like element amplified in the genome of Lilium speciosum
34. Sequence analysis of chromosome 2 of the plant Arabidopsis thaliana
35. Functional analysis of deletion derivatives of the maize transposon MuDR delineates roles for the MURA and MURB proteins
36. Rice transposable elements: A survey of 73,000 sequence-tagged connectors
37. Essential large transcripts of the maize Spm transposable element are generated by alternative splicing
38. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana
39. Chromosomal organization and genic expression
40. The significance of responses of the genome to challenges
41. Importance of anchor genomes for any plant genome project
42. Structure and organization of the Arabidopsis thaliana nuclear genome
43. Classification and relationships of rice strains with AA genome by identification of transposable elements at nine loci
44. Characterization of plant SINE, p-SINE1, in rice genomes
45. Identification of Tnr3, a Supressor-Mutator/Enhancer-like transposable element from rice
46. Bacterial insertion sequences
47. SINEs and LINEs share common 3' sequences: A review
48. Resident aliens: The Tc1/mariner superfamily of transposable elements
49. A TY3/GYPSY retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes
50. Concerted formation of macromolecular Suppressor-mutator transposition complexes
51. Characterization of a Mutator system in maize
52. The Mariner transposable element is widespread in insects
53. Negative effect of the 5'-untranslated leader sequence on Ac transposon promoter expression
54. Identification and characterization of 14 transposon-like elements in the noncoding regions of members of the Xa21 family of disease resistance genes in rice
55. Characterization of a highly conserved sequence related to Mutator transposable element in maize
56. Mu transposable elements are structurally diverse and distributed throughout the genus Zea
57. The complete sequence of 340 Kb of DNA around the rice Adh1-Adh2 region reveals interrupted colinearity with maize chromosome 4
58. BLAST 2 sequences - A new tool for comparing protein and nucleotide sequences
59. Structural domains and matrix attachment regions along colinear chromosomal segments of maize and Sorghum
60. Diversification of the rice Waxy gene by insertion of mobile elements into introns
61. Repetitive sequences: Cause for variation in genome size and chromosome morphology in the genus Oryza
62. The distribution and copy number of copia-like retrotransposons in rice (Oryza sativa L.) and their implications in the organization and evolution of the rice genome
63. LTR-retrotransposons and MITEs: Important players in the evolution of plant genomes
64. A maize MuDR-like element expressed in rice callus subcultured with proline
65. Mutator-like elements (MULEs) in Arabidopsis thaliana: Structure, diversity and evolution
66. Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize
67. Independent amplification of two classes of Tourist in some Oryza species