메뉴 건너뛰기




Volumn 5, Issue 7, 2010, Pages 695-704

Building the blueprint of life

Author keywords

Bacillus subtilis; Escherichia coli; Minimal organism; Mycoplasma genitalium; Synthetic biology

Indexed keywords

BACTERIOLOGY; ESCHERICHIA COLI; METABOLISM;

EID: 77954694190     PISSN: 18606768     EISSN: 18607314     Source Type: Journal    
DOI: 10.1002/biot.201000076     Document Type: Review
Times cited : (19)

References (53)
  • 1
    • 77953584054 scopus 로고    scopus 로고
    • Creation of a bacterial cell controlled by a chemically synthesized genome
    • in press. DOI: 10.1126/science.1190719
    • Gibson, D. G., Glass, J. I., Lartigue, C., Noskov, V. N. et al., Creation of a bacterial cell controlled by a chemically synthesized genome. Science 2010, in press. DOI: 10.1126/science.1190719
    • (2010) Science
    • Gibson, D.G.1    Glass, J.I.2    Lartigue, C.3    Noskov, V.N.4
  • 2
    • 33846108255 scopus 로고    scopus 로고
    • Towards synthesis of a minimal cell
    • Forster, A. C., Church, G. M., Towards synthesis of a minimal cell. Mol. Syst. Biol. 2006, 2, 45.
    • (2006) Mol. Syst. Biol. , vol.2 , pp. 45
    • Forster, A.C.1    Church, G.M.2
  • 4
    • 0036829840 scopus 로고    scopus 로고
    • Toward the engineering of minimal living cells
    • Luisi, P. L., Toward the engineering of minimal living cells. Anat. Rec. 2002, 268, 208-214.
    • (2002) Anat. Rec. , vol.268 , pp. 208-214
    • Luisi, P.L.1
  • 5
    • 0034571148 scopus 로고    scopus 로고
    • How many genes can make a cell: The minimal-gene-set concept
    • Koonin, E. V., How many genes can make a cell: the minimal-gene-set concept. Annu. Rev. Genomics Hum. Genet. 2000, 1, 99-116.
    • (2000) Annu. Rev. Genomics Hum. Genet. , vol.1 , pp. 99-116
    • Koonin, E.V.1
  • 6
    • 4544371669 scopus 로고    scopus 로고
    • Determination of the core of a minimal bacterial gene set
    • Gil, R., Silva, F. J., Pereto, J., Moya, A., Determination of the core of a minimal bacterial gene set. Microbiol. Mol. Biol. R 2004, 68, 518-537.
    • (2004) Microbiol. Mol. Biol. R , vol.68 , pp. 518-537
    • Gil, R.1    Silva, F.J.2    Pereto, J.3    Moya, A.4
  • 7
    • 19944431737 scopus 로고    scopus 로고
    • Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome
    • Hashimoto, M., Ichimura, T., Mizoguchi, H., Tanaka, K. et al., Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome. Mol. Microbiol. 2005, 55, 137-149.
    • (2005) Mol. Microbiol. , vol.55 , pp. 137-149
    • Hashimoto, M.1    Ichimura, T.2    Mizoguchi, H.3    Tanaka, K.4
  • 8
    • 73849146159 scopus 로고    scopus 로고
    • Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis
    • Morimoto, T., Kadoya, R., Endo, K., Tohata, M. et al., Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis. DNA Res. 2008, 15, 73-81.
    • (2008) DNA Res. , vol.15 , pp. 73-81
    • Morimoto, T.1    Kadoya, R.2    Endo, K.3    Tohata, M.4
  • 9
    • 39449112551 scopus 로고    scopus 로고
    • Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome
    • Gibson, D. G., Benders, G. A., Andrews-Pfannkoch, C., Denisova, E. A. et al., Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. Science 2008, 319, 1215-1220.
    • (2008) Science , vol.319 , pp. 1215-1220
    • Gibson, D.G.1    Benders, G.A.2    Andrews-Pfannkoch, C.3    Denisova, E.A.4
  • 10
  • 11
    • 0029789824 scopus 로고    scopus 로고
    • A minimal gene set for cellular life derived by comparison of complete bacterial genomes
    • Mushegian, A. R., Koonin, E. V., A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc. Natl. Acad. Sci. USA 1996, 93, 10268-10273.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 10268-10273
    • Mushegian, A.R.1    Koonin, E.V.2
  • 12
    • 67650573077 scopus 로고    scopus 로고
    • iBsu1103: A new genome scale metabolic model of B. subtilis based on SEED annotations
    • Henry, C. S., Zinner, J., Cohoon, M., Stevens, R., iBsu1103: A new genome scale metabolic model of B. subtilis based on SEED annotations. Genome Biol. 2009, 10, R69.
    • (2009) Genome Biol. , vol.10
    • Henry, C.S.1    Zinner, J.2    Cohoon, M.3    Stevens, R.4
  • 13
    • 61449115916 scopus 로고    scopus 로고
    • A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189
    • Suthers, P. F., Dasika, M. S., Kumar, V. S., Denisov, G. et al., A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189. PLoS Comput. Biol. 2009, 5, e1000285.
    • (2009) PLoS Comput. Biol. , vol.5
    • Suthers, P.F.1    Dasika, M.S.2    Kumar, V.S.3    Denisov, G.4
  • 14
    • 33646722147 scopus 로고    scopus 로고
    • Emergent properties of reduced-genome Escherichia coli
    • Posfai, G., Plunkett, G., 3rd, Feher, T., Frisch, D. et al., Emergent properties of reduced-genome Escherichia coli. Science 2006, 312, 1044-1046.
    • (2006) Science , vol.312 , pp. 1044-1046
    • Posfai, G.1    Plunkett III, G.2    Feher, T.3    Frisch, D.4
  • 15
    • 20044375201 scopus 로고    scopus 로고
    • Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
    • Fischer, E., Sauer, U., Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism. Nat. Genet. 2005, 37, 636-640.
    • (2005) Nat. Genet. , vol.37 , pp. 636-640
    • Fischer, E.1    Sauer, U.2
  • 16
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A. et al., Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 1995, 269, 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3    Clayton, R.A.4
  • 17
    • 0028906201 scopus 로고
    • An estimation of minimal genome size required for life
    • Itaya, M., An estimation of minimal genome size required for life. FEBS Lett. 1995, 362, 257-260.
    • (1995) FEBS Lett. , vol.362 , pp. 257-260
    • Itaya, M.1
  • 18
    • 0028829125 scopus 로고
    • The minimal gene complement of Mycoplasma genitalium
    • Fraser, C. M., Gocayne, J. D., White, O., Adams, M. D. et al., The minimal gene complement of Mycoplasma genitalium. Science 1995, 270, 397-403.
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1    Gocayne, J.D.2    White, O.3    Adams, M.D.4
  • 20
    • 11844306574 scopus 로고    scopus 로고
    • The SEED: A peer-topeer environment for genome annotation
    • Overbeek, R., Disz, T., Stevens, R., The SEED: A peer-topeer environment for genome annotation. Commun. ACM 2004, 47, 46-51.
    • (2004) Commun. ACM , vol.47 , pp. 46-51
    • Overbeek, R.1    Disz, T.2    Stevens, R.3
  • 21
    • 10544255079 scopus 로고    scopus 로고
    • Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae
    • DOI 10.1093/nar/24.22.4420
    • Himmelreich, R., Hilbert, H., Plagens, H., Pirkl, E. et al., Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res. 1996, 24, 4420-4449. (Pubitemid 26388629)
    • (1996) Nucleic Acids Research , vol.24 , Issue.22 , pp. 4420-4449
    • Himmelreich, R.1    Hubert, H.2    Plagens, H.3    Pirkl, E.4    Li, B.-C.5    Herrmann, R.6
  • 22
    • 0030811859 scopus 로고    scopus 로고
    • Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium
    • Himmelreich, R., Plagens, H., Hilbert, H., Reiner, B., Herrmann, R., Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium. Nucleic Acids Res. 1997, 25, 701-712.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 701-712
    • Himmelreich, R.1    Plagens, H.2    Hilbert, H.3    Reiner, B.4    Herrmann, R.5
  • 23
    • 1542272747 scopus 로고    scopus 로고
    • Comparative genomics, minimal gene-sets and the last universal common ancestor
    • Koonin, E. V., Comparative genomics, minimal gene-sets and the last universal common ancestor. Nat. Rev. Microbiol. 2003, 1, 127-136.
    • (2003) Nat. Rev. Microbiol. , vol.1 , pp. 127-136
    • Koonin, E.V.1
  • 24
    • 0017815398 scopus 로고
    • The mRNA-directed synthesis of the alpha0peptide of beta-galactosidase, ribosomal proteins L12 and L10, and elongation factor Tu, using purified translational factors
    • Kung, H. F., Chu, F., Caldwell, P., Spears, C. et al., The mRNA-directed synthesis of the alpha0peptide of beta-galactosidase, ribosomal proteins L12 and L10, and elongation factor Tu, using purified translational factors. Arch. Biochem. Biophys. 1978, 187, 457-463.
    • (1978) Arch. Biochem. Biophys. , vol.187 , pp. 457-463
    • Kung, H.F.1    Chu, F.2    Caldwell, P.3    Spears, C.4
  • 25
    • 0035957328 scopus 로고    scopus 로고
    • Visualization of oligonucleotide probes and point mutations in interphase nuclei and DNA fibers using rolling circle DNA amplification
    • Zhong, X. B., Lizardi, P. M., Huang, X. H., Bray-Ward, P. L., Ward, D. C., Visualization of oligonucleotide probes and point mutations in interphase nuclei and DNA fibers using rolling circle DNA amplification. Proc. Natl. Acad. Sci. USA 2001, 98, 3940-3945.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 3940-3945
    • Zhong, X.B.1    Lizardi, P.M.2    Huang, X.H.3    Bray-Ward, P.L.4    Ward, D.C.5
  • 26
    • 0037001977 scopus 로고    scopus 로고
    • Cre/lox: One more step in the taming of the genome
    • Sauer, B., Cre/lox: one more step in the taming of the genome. Endocrine 2002, 19, 221-228.
    • (2002) Endocrine , vol.19 , pp. 221-228
    • Sauer, B.1
  • 27
    • 0025193146 scopus 로고
    • External guide sequence for an RNA enzyme
    • Forster, A. C., Altman, S., External guide sequences for an RNA enzyme. Science 1990, 249, 783-786. (Pubitemid 20259115)
    • (1990) Science , vol.249 , Issue.4970 , pp. 783-786
    • Forster, A.C.1    Altman, S.2
  • 28
    • 0023643095 scopus 로고
    • Self-cleavage of virusoid RNA is performed by the proposed 55-nucleotide active site
    • Forster, A. C., Symons, R. H., Self-cleavage of virusoid RNA is performed by the proposed 55-nucleotide active site. Cell 1987, 50, 9-16.
    • (1987) Cell , vol.50 , pp. 9-16
    • Forster, A.C.1    Symons, R.H.2
  • 29
    • 4544371669 scopus 로고    scopus 로고
    • Determination of the core of a minimal bacterial gene set
    • Gil, R., Silva, F. J., Pereto, J., Moya, A., Determination of the core of a minimal bacterial gene set. Microbiol. Mol. Biol. Rev. 2004, 68, 518-537.
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 518-537
    • Gil, R.1    Silva, F.J.2    Pereto, J.3    Moya, A.4
  • 32
    • 57549094614 scopus 로고    scopus 로고
    • Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data
    • Durot, M., Le Fevre, F., de Berardinis, V., Kreimeyer, A. et al., Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data.BMC Syst. Biol. 2008, 2, 85.
    • (2008) BMC Syst. Biol. , vol.2 , pp. 85
    • Durot, M.1    Le Fevre, F.2    De Berardinis, V.3    Kreimeyer, A.4
  • 33
    • 0037154255 scopus 로고    scopus 로고
    • A genome-scale analysis for identification of genes required for growth or survival of Haemophilus influenzae
    • Akerley, B. J., Rubin, E. J., Novick, V. L., Amaya, K. et al., A genome-scale analysis for identification of genes required for growth or survival of Haemophilus influenzae. Proc. Natl. Acad. Sci. USA 2002, 99, 966-971.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 966-971
    • Akerley, B.J.1    Rubin, E.J.2    Novick, V.L.3    Amaya, K.4
  • 34
    • 0345701347 scopus 로고    scopus 로고
    • Genes required for mycobacterial growth defined by high density mutagenesis
    • Sassetti, C. M., Boyd, D. H., Rubin, E. J., Genes required for mycobacterial growth defined by high density mutagenesis. Mol. Microbiol. 2003, 48, 77-84.
    • (2003) Mol. Microbiol. , vol.48 , pp. 77-84
    • Sassetti, C.M.1    Boyd, D.H.2    Rubin, E.J.3
  • 35
    • 34347332311 scopus 로고    scopus 로고
    • A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
    • Feist, A. M., Henry, C. S., Reed, J. L., Krummenacker, M. et al., A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol. Syst. Biol. 2007, 3, 121.
    • (2007) Mol. Syst. Biol. , vol.3 , pp. 121
    • Feist, A.M.1    Henry, C.S.2    Reed, J.L.3    Krummenacker, M.4
  • 36
    • 9244239747 scopus 로고    scopus 로고
    • Global transposon mutagenesis and essential gene analysis of Helicobacter pylori
    • Salama, N. R., Shepherd, B., Falkow, S., Global transposon mutagenesis and essential gene analysis of Helicobacter pylori. J. Bacteriol. 2004, 186, 7926-7935.
    • (2004) J. Bacteriol. , vol.186 , pp. 7926-7935
    • Salama, N.R.1    Shepherd, B.2    Falkow, S.3
  • 37
    • 1642565398 scopus 로고    scopus 로고
    • Large-scale identification of essential Salmonella genes by trapping lethal insertions
    • Knuth, K., Niesalla, H., Hueck, C. J., Fuchs, T. M., Large-scale identification of essential Salmonella genes by trapping lethal insertions. Mol. Microbiol. 2004, 51, 1729-1744.
    • (2004) Mol. Microbiol. , vol.51 , pp. 1729-1744
    • Knuth, K.1    Niesalla, H.2    Hueck, C.J.3    Fuchs, T.M.4
  • 38
    • 0035929121 scopus 로고    scopus 로고
    • Identification of critical staphylococcal genes using conditional phenotypes generated by antisense RNA
    • Ji, Y., Zhang, B., Van, S. F., Horn et al., Identification of critical staphylococcal genes using conditional phenotypes generated by antisense RNA. Science 2001, 293, 2266-2269.
    • (2001) Science , vol.293 , pp. 2266-2269
    • Ji, Y.1    Zhang, B.2    Van, S.F.3    Horn4
  • 39
    • 0037100683 scopus 로고    scopus 로고
    • Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae
    • Thanassi, J. A., Hartman-Neumann, S. L., Dougherty, T. J., Dougherty, B. A., Pucci, M. J., Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae. Nucleic Acids Res. 2002, 30, 3152-3162.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3152-3162
    • Thanassi, J.A.1    Hartman-Neumann, S.L.2    Dougherty, T.J.3    Dougherty, B.A.4    Pucci, M.J.5
  • 42
    • 45149084024 scopus 로고    scopus 로고
    • Large-scale transposon mutagenesis of Mycoplasma pulmonis
    • French, C. T., Lao, P., Loraine, A. E., Matthews, B. T. et al., Large-scale transposon mutagenesis of Mycoplasma pulmonis. Mol. Microbiol. 2008, 69, 67-76.
    • (2008) Mol. Microbiol. , vol.69 , pp. 67-76
    • French, C.T.1    Lao, P.2    Loraine, A.E.3    Matthews, B.T.4
  • 43
    • 33846504443 scopus 로고    scopus 로고
    • A comprehensive transposon mutant library of Francisella novicida, a bioweapon surrogate
    • Gallagher, L. A., Ramage, E., Jacobs, M. A., Kaul, R. et al., A comprehensive transposon mutant library of Francisella novicida, a bioweapon surrogate. Proc. Natl. Acad. Sci. USA 2007, 104, 1009-1014.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 1009-1014
    • Gallagher, L.A.1    Ramage, E.2    Jacobs, M.A.3    Kaul, R.4
  • 45
    • 0344328817 scopus 로고    scopus 로고
    • An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
    • Reed, J. L., Vo, T. D., Schilling, C. H., Palsson, B. O., An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol. 2003, 4, 1-12.
    • (2003) Genome Biol. , vol.4 , pp. 1-12
    • Reed, J.L.1    Vo, T.D.2    Schilling, C.H.3    Palsson, B.O.4
  • 46
    • 0034798879 scopus 로고    scopus 로고
    • Minimal reaction sets for Escherichia coli metabolism under different growth requirements and uptake environments
    • Burgard, A. P., Vaidyaraman, S., Maranas, C. D., Minimal reaction sets for Escherichia coli metabolism under different growth requirements and uptake environments. Biotechnol. Prog. 2001, 17, 791-797.
    • (2001) Biotechnol. Prog. , vol.17 , pp. 791-797
    • Burgard, A.P.1    Vaidyaraman, S.2    Maranas, C.D.3
  • 47
    • 63549148162 scopus 로고    scopus 로고
    • Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: A knowledge base, its mathematical formulation, and its functional characterization
    • Thiele, I., Jamshidi, N., Fleming, R. M., Palsson, B. O., Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization. PLoS Comput. Biol. 2009, 5, e1000312.
    • (2009) PLoS Comput. Biol. , vol.5
    • Thiele, I.1    Jamshidi, N.2    Fleming, R.M.3    Palsson, B.O.4
  • 48
    • 0037008673 scopus 로고    scopus 로고
    • Transcriptional regulation in constraints-based metabolic models of Escherichia coli
    • Covert, M. W., Palsson, B. O., Transcriptional regulation in constraints-based metabolic models of Escherichia coli. J. Biol. Chem. 2002, 277, 28058-28064.
    • (2002) J. Biol. Chem. , vol.277 , pp. 28058-28064
    • Covert, M.W.1    Palsson, B.O.2
  • 49
    • 33750811169 scopus 로고    scopus 로고
    • Leaner and meaner genomes in Escherichia coli
    • Ussery, D. W., Leaner and meaner genomes in Escherichia coli. Genome Biol. 2006, 7, 237.
    • (2006) Genome Biol. , vol.7 , pp. 237
    • Ussery, D.W.1
  • 51
    • 0036034078 scopus 로고    scopus 로고
    • A new mutation delivery system for genome-scale approaches in Bacillus subtilis
    • Fabret, C., Ehrlich, S. D., Noirot, P., A new mutation delivery system for genome-scale approaches in Bacillus subtilis. Mol. Microbiol. 2002, 46, 25-36.
    • (2002) Mol. Microbiol. , vol.46 , pp. 25-36
    • Fabret, C.1    Ehrlich, S.D.2    Noirot, P.3
  • 52
    • 70349324305 scopus 로고    scopus 로고
    • Creating bacterial strains from genomes that have been cloned and engineered in yeast
    • Lartigue, C., Vashee, S., Algire, M. A., Chuang, R. Y. et al., Creating bacterial strains from genomes that have been cloned and engineered in yeast. Science 2009, 325, 1693-1696.
    • (2009) Science , vol.325 , pp. 1693-1696
    • Lartigue, C.1    Vashee, S.2    Algire, M.A.3    Chuang, R.Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.