Minimal reaction sets for Escherichia coli metabolism under different growth requirements and uptake environments

Biotechnology Progress

Volumn 17, Issue 5, 2001, Pages 791-797

  Burgard, A P ^a   Vaidyaraman, S ^a   Maranas, C D ^a  

^a The Pennsylvania State University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FLUX BALANCE MODEL;

BACTERIAL GROWTH; BACTERIAL METABOLISM; CELL MEMBRANE TRANSPORT; CULTURE MEDIUM; GLUCOSE; GROWTH RATE; MATHEMATICAL ANALYSIS; MODEL; ORGANIC MATTER; SECONDARY METABOLITE;

ESCHERICHIA COLI; GLUCOSE; SUBSTRATES;

METABOLISM;

CELL DIVISION; COMPUTER SIMULATION; CULTURE MEDIA; ENZYMES; ESCHERICHIA COLI; METABOLISM; MODELS, BIOLOGICAL;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0034798879     PISSN: 87567938     EISSN: None     Source Type: Journal    
DOI: 10.1021/bp0100880     Document Type: Article

References (21)

1. Ethical considerations in synthesizing a minimal genome
2. Global transposon mutagenesis and a minimal mycoplasma genome
3. Most of the yeast genomic sequences are not essential for cell growth and division
4. An estimation of minimal genome size required for life
5. A minimal gene set for cellular life derived by comparison of complete bacterial genomes
6. A genome-based approach for the identification of essential bacterial genes
7. Constructing a minimal genome
8. The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
9. KEGG: The Kyoto Encyclopedia of Genes and Genomes
10. The EcoCyc and MetaCyc databases
11. Review of EcoCyc and MetaCyc databases
12. Toward metabolic phenomics: Analysis of genomic data using flux balances
13. Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions
14. The initiation of DNA replication in a mathematical model of a minimal cell
15. Metabolic flux balancing: Basic concepts, scientific and practical use
16. Nutrient-related analysis of pathway/genome databases