Analysis of expressed sequence tags for Frankliniella occidentalis, the western flower thrips

Insect Molecular Biology

Volumn 19, Issue 4, 2010, Pages 537-551

  Rotenberg, D ^a   Whitfield, A E ^a  

^a KANSAS STATE UNIVERSITY   (United States)

Author keywords

arthropod vector; expressed sequence tag; Frankliniella occidentalis; immune response; RNAi; Thysanoptera; Tomato spotted wilt virus; Tospovirus; transcriptome

Indexed keywords

RNA;

ANIMAL; ARTICLE; EXPRESSED SEQUENCE TAG; FLOWER; GENE LIBRARY; GENE SILENCING; GENETICS; INNATE IMMUNITY; INSECT; LARVA; METABOLISM; PARASITOLOGY; PROTEIN SYNTHESIS;

ANIMALS; EXPRESSED SEQUENCE TAGS; FLOWERS; GENE LIBRARY; GENE SILENCING; IMMUNITY, INNATE; INSECTS; LARVA; PROTEIN BIOSYNTHESIS; RNA;

ARTHROPODA; FRANKLINIELLA OCCIDENTALIS; HEXAPODA; THYSANOPTERA; TOMATO SPOTTED WILT VIRUS; TOSPOVIRUS;

EID: 77954344860     PISSN: 09621075     EISSN: 13652583     Source Type: Journal    
DOI: 10.1111/j.1365-2583.2010.01012.x     Document Type: Article

References (68)

1. Bakal, C., Linding, R., Llense, F., Heffern, E., Martin-Blanco, E., Pawson, T. et al. (2008) Phosphorylation networks regulating JNK activity in diverse genetic backgrounds. Science 322 : 453 456.
2. Barnes, W.M. (1994) Tips and tricks for long and accurate PCR. Trends Biochem Sci 19 : 342 343.
3. Bautista, R.C., Mau, R.F.L., Cho, J.J. Custer, D.M. (1995) Potential of tomato spotted wilt tospovirus plant hosts in Hawaii as virus reservoirs for transmission by Frankliniella occidentalis (Thysanoptera, Thripidae). Phytopathology 85 : 953 958.
4. Bhoj, V.G. Chen, Z.J. (2009) Ubiquitylation in innate and adaptive immunity. Nature 458 : 430 437.
5. Campbell, C., Black, W., Hess, A. Foy, B. (2008a) Comparative genomics of small RNA regulatory pathway components in vector mosquitoes. BMC Genomics 9 : 425.
6. Campbell, C.L., Keene, K.M., Brackney, D.E., Olson, K.E., Blair, C.D., Wilusz, J. et al. (2008b) Aedes aegypti uses RNA interference in defense against sindbis virus infection. BMC Microbiol 8 : 47.
7. Carmell, M.A. Hannon, G.J. (2004) RNase III enzymes and the initiation of gene silencing. Nat Struct Mol Biol 11 : 214 218.
8. Carrera, P., Johnstone, O., Nakamura, A., Casanova, J., Jackle, H. Lasko, P. (2000) VASA mediates translation through interaction with a Drosophila yIF2 homolog. Mol Cell 5 : 181 187.
9. Cho, N.K., Keyes, L., Johnson, E., Heller, J., Ryner, L., Karim, F. et al. (2002) Developmental control of blood cell migration by the Drosophila VEGF pathway. Cell 108 : 865 876.
10. Christophides, G.K., Zdobnov, E., Barillas-Mury, C., Birney, E., Blandin, S., Blass, C. et al. (2002) Immunity-related genes and gene families in Anopheles gambiae. Science 298 : 159 165.
11. Dostert, C., Jouanguy, E., Irving, P., Troxler, L., Galiana-Arnoux, D., Hetru, C. et al. (2005) The JAK-STAT signaling pathway is required but not sufficient for the antiviral response of Drosophila. Nat Immunol 6 : 946 953.
12. Friberg, A., Corsini, L., Mourão, A. Sattler, M. (2009) Structure and ligand binding of the extended tudor domain of D. melanogaster Tudor-SN. J Mol Biol 387 : 921 934.
13. Gauthier, J., Legeai, F. Tagu, D. (2009) AphidBase, a centralized database for aphid genes and genomes. II Pea Aphid Genome Annotation Workshop, 4-5 June 2009, Centre for Genomic Regulation, Barcelona, Spain (Abstract).
14. Gullan, P.J. Cranston, P.S. (2005) The Insects: An Outline of Entomology, 3rd edn. Blackwell Publishing Ltd.
15. Hacker, J.K. Hardy, J.L. (1997) Adsorptive endocytosis of california encephalitis virus into mosquito and mammalian cells: a role for G1. Virology 235 : 40 47.
16. Hay, B.A., Wassarman, D.A. Rubin, G.M. (1995) Drosophila homologs of baculovirus inhibitor of apoptosis proteins function to block cell death. Cell 83 : 1253 1262.
17. Hegan, P.S., Mermall, V., Tilney, L.G. Mooseker, M.S. (2007) Roles for Drosophila melanogaster myosin IB in maintenance of enterocyte brush-border structure and resistance to the bacterial pathogen Pseudomonas entomophila. Mol Biol Cell 18 : 4625 4636.
18. Heming, B.S. (1973) Metamorphosis of pretarsus in Frankliniella fusca (Hinds) (Thripidae) and Haplothrips verbasci (Osborn) (Phlaeothripidae) (Thysanoptera). Can J Zool 51 : 1211 1234.
19. Heming, B.S. (1980) Development of the mouthparts in embryos of Haplothrips verbasci (Osborn) (Insecta, Thysanoptera, Phlaeothripidae). J Morphol 164 : 235 263.
20. Huang, X.Q. Madan, A. (1999) CAP3: a DNA sequence assembly program. Genome Res 9 : 868 877.
21. Hunter, W.B. Ullman, D.E. (1992) Anatomy and ultrastructure of the piercing-sucking mouthparts and paraglossal sensilla of Frankliniella occidentalis (Pergande) (Thysanoptera, Thripidae). Int J Insect Morphol Embryol 21 : 17 35.
22. Jin, M., Park, J., Lee, S., Park, B., Shin, J., Song, K. et al. (2002) Hantaan virus enters cells by clathrin-dependent receptor-mediated endocytosis. Virology 294 : 60 69.
23. Kambris, Z., Brun, S., Jang, I., Nam, H., Romeo, Y., Takahashi, K. et al. (2006) Drosophila immunity: a large-scale in vivo RNAi screen identifies five serine proteases required for toll activation. Curr Biol 16 : 808 813.
24. Kim, V.N., Han, J. Siomi, M.C. (2009) Biogenesis of small RNAs in animals. Nat Rev Mol Cell Biol 10 : 126 139.
25. Lee, Y.S., Nakahara, K., Pham, J.W., Kim, K., He, Z., Sontheimer, E.J. et al. (2004) Distinct roles for Drosophila dicer-1 and dicer-2 in the siRNA/miRNA silencing pathways. Cell 117 : 69 81.
26. Lemaitre, B., Nicolas, E., Michaut, L., Reichhart, J.M. Hoffmann, J.A. (1996) The dorsoventral regulatory gene cassette spatzle/Toll/cactus controls the potent antifungal response in Drosophila adults. Cell 86 : 973 983.
27. Ligoxygakis, P., Pelte, N., Hoffmann, J.A. Reichhart, J. (2002) Activation of Drosophila toll during fungal infection by a blood serine protease. Science 297 : 114 116.
28. Lindbo, J.A., Silva-Rosales, L., Proebsting, W.M. Dougherty, W.G. (1993) Induction of a highly specific antiviral state in transgenic plants: implications for regulation of gene expression and virus resistance. Plant Cell 5 : 1749 1759.
29. Megosh, H.B., Cox, D.N., Campbell, C. Lin, H. (2006) The role of PIWI and the miRNA machinery in Drosophila germline determination. Curr Biol 16 : 1884 1894.
30. Meister, G. Tuschl, T. (2004) Mechanisms of gene silencing by double-stranded RNA. Nature 431 : 343 349.
31. Morse, J.G. Hoddle, M.S. (2006) Invasion biology of thrips. Annu Rev Entomol 51 : 67 89.
32. Mound, L.A. (2002) So many thrips - so few Tospoviruses. In Thrips and Tospoviruses: Proceedings of the 7th International Symposium of Thysanoptera (Marullo, R. Mound, L.A., eds), pp. 3 6. Australian National Insect Collection
33. Okamura, K., Ishizuka, A., Siomi, H. Siomi, M.C. (2004) Distinct roles for argonaute proteins in small RNA-directed RNA cleavage. Genes Dev 18 : 1655 1666.
34. Parker, J.S. Barford, D. (2006) Argonaute: a scaffold for the function of short regulatory RNAs. Trends Biochem Sci 31 : 622 630.
35. Pelkmans, L. Helenius, A. (2003) Insider information: what viruses tell us about endocytosis. Curr Opin Cell Biol 15 : 414 422.
36. Ramanathan, H.N., Chung, D., Plane, S.J., Sztul, E., Chu, Y., Guttieri, M.C. et al. (2007) Dynein-dependent transport of the hantaan virus nucleocapsid protein to the endoplasmic reticulum-golgi intermediate compartment. J Virol 81 : 8634 8647.
37. Reitz, S.R. (2009) Biology and ecology of the western flower thrips (Thysanoptera: Thripidae): the making of a pest. Fla Entomol 92 : 7 13.
38. Ritsick, D.R., Edens, W.A., McCoy, J.W. Lambeth, J.D. (2004) The use of model systems to study biological functions of Nox/Duox enzymes. Biochem Soc Symp 71 : 85 96.
39. Rodriguez, A., Chen, P., Oliver, H. Abrams, J.M. (2002) Unrestrained caspase-dependent cell death caused by loss of Diap1 function requires the Drosophila Apaf-1 homolog, Dark. EMBO J 21 : 2197.
40. Rotenberg, D., Kumar, N.K.K., Ullman, D.E., Montero-Astúa, M., Willis, D.K., German, T.L. et al. (2009) Variation in Tomato spotted wilt virus titer in Frankliniella occidentalis and its association with frequency of transmission. Phytopathology 99 : 404 410.
41. Roxstrom-Lindquist, K., Terenius, O. Faye, I. (2004) Parasite-specific immune response in adult Drosophila melanogaster: a genomic study. EMBO Rep 5 : 207 212.
42. Rutschmann, S., Kilinc, A. Ferrandon, D. (2002) Cutting edge: the toll pathway is required for resistance to gram-positive bacterial infections in Drosophila. J Immunol 168 : 1542 1546.
43. Sackton, T.B., Lazzaro, B.P., Schlenke, T.A., Evans, J.D., Hultmark, D. Clark, A.G. (2007) Dynamic evolution of the innate immune system in Drosophila. Nat Genet 39 : 1461 1468.
44. Silverman, E., Edwalds-Gilbert, G. Lin, R.J. (2003) DExD/H-box proteins and their partners: helping RNA helicases unwind. Gene 312 : 1 16.
45. Sin, S., McNulty, B.C., Kennedy, G.G. Moyer, J.W. (2005) Viral genetic determinants for thrips transmission of Tomato spotted wilt virus. Proc Natl Acad Sci USA 102 : 5168 5173.
46. Stramer, B., Wood, W., Galko, M.J., Redd, M.J., Jacinto, A., Parkhurst, S.M. et al. (2005) Live imaging of wound inflammation in Drosophila embryos reveals key roles for small GTPases during in vivo cell migration. J Cell Biol 168 : 567 573.
47. Tang, H., Kambris, Z., Lemaitre, B. Hashimoto, C. (2006) Two proteases defining a melanization cascade in the immune system of Drosophila. J Biol Chem 281 : 28097 28104.
48. Tanner, N.K. Linder, P. (2001) DExD/H box RNA helicases: from generic motors to specific dissociation functions. Mol Cell 8 : 251 262.
49. Tanner, N.K., Cordin, O., Banroques, J., Doere, M. Linder, P. (2003) The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis. Mol Cell 11 : 127 138.
50. Tomari, Y., Du, T.T., Haley, B., Schwarz, D.S., Bennett, R., Cook, H.A. et al. (2004) RISC assembly defects in the Drosophila RNAi mutant armitage. Cell 116 : 831 841.
51. Tribolium Genome Sequencing Consortium, Richards, S., Gibbs, R.A., Weinstock, G.M., Brown, S.J., Denell, R., Beeman, R.W. et al. (2008) The genome of the model beetle and pest Tribolium castaneum. Nature 452 : 949 955.
52. Tsai, C.W., McGraw, E.A., Ammar, E., Dietzgen, R.G. Hogenhout, S.A. (2008) Drosophila melanogaster mounts a unique immune response to the rhabdovirus sigma virus. Appl Environ Microbiol 74 : 3251.
53. Ullman, D.E., Cho, J.J., Mau, R.F.L., Wescot, D.M. Custer, D.M. (1992) A midgut barrier to tomato spotted wilt virus acquisition by adult western flower thrips. Phytopathology 82 : 1333 1342.
54. Vagin, V.V., Klenov, M.S., Kalmykova, A.I., Stolyarenko, A.D., Kotelnikov, R.N. Gvozdev, V.A. (2004) RNA interference proteins and vasa locus are involved in the silencing of retrotransposons in the female germline of Drosophila melanogaster. RNA Biol 1 : 54 58.
55. Volz, J., Mueller, H., Zdanowicz, A., Kafatos, F.C. Osta, M.A. (2006) A genetic module regulates the melanization response of Anopheles to plasmodium. Cell Microbiol 8 : 1392 1405.
56. Wang, X.H., Aliyari, R., Li, W.X., Li, H.W., Kim, K., Carthew, R. et al. (2006) RNA interference directs innate immunity against viruses in adult Drosophila. Science 312 : 452 454.
57. Waterhouse, R.M., Kriventseva, E.V., Meister, S., Xi, Z., Alvarez, K.S., Bartholomay, L.C. et al. (2007) Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes. Science 316 : 1738 1743.
58. N. J Virol 78 : 13197 13206.
59. Whitfield, A.E., Ullman, D.E. German, T.L. (2005) Tospovirus-thrips interactions. Annu Rev Phytopathol 43 : 459 489.
60. N-S) inhibits transmission of TSWV by Frankliniella occidentalis. Phytopathology 98 : 45 50.
61. Williams, M.J. (2007) Drosophila hemopoiesis and cellular immunity. J Immunol 178 : 4711 4716.
62. Williams, M.J., Habayeb, M.S. Hultmark, D. (2007) Reciprocal regulation of Rac1 and Rho1 in Drosophila circulating immune surveillance cells. J Cell Sci 120 : 502 511.
63. Zambon, R.A., Nandakumar, M., Vakharia, V.N. Wu, L.P. (2005) The toll pathway is important for an antiviral response in Drosophila. Proc Natl Acad Sci USA 102 : 7257 7262.
64. Zambon, R.A., Vakharia, V.N. Wu, L.P. (2006) RNAi is an antiviral immune response against a dsRNA virus in Drosophila melanogaster. Cell Microbiol 8 : 880 889.
65. Zettervall, C., Anderl, I., Williams, M.J., Palmer, R., Kurucz, E., Ando, I. et al. (2004) A directed screen for genes involved in Drosophila blood cell activation. Proc Natl Acad Sci USA 101 : 14192 14197.
66. Zhu, Y.Y., Machleder, E.M., Chenchik, A.C., Li, R. Siebert, P.D. (2001) Reverse transcriptase template-switching: a SMART® approach for full-length cDNA library construction. BioTechniques 30 : 892 897.
67. Zhulidov, P.A., Bogdanova, E.A., Shcheglov, A.S., Vagner, L.L., Khaspekov, G.L., Kozhemyako, V.B. et al. (2004) Simple cDNA normalization using kamchatka crab duplex-specific nuclease. Nucleic Acids Res 32 : e37.
68. Zou, Z., Evans, J.D., Lu, Z., Zhao, P., Williams, M., Sumathipala, N. et al. (2007) Comparative genomic analysis of the Tribolium immune system. Genome Biol 8 : R177.