메뉴 건너뛰기




Volumn 26, Issue 12, 2010, Pages 1535-1541

Deuteration distribution estimation with improved sequence coverage for HX/MS experiments

Author keywords

[No Author keywords available]

Indexed keywords

DEUTERIUM; PROTEIN;

EID: 77954194030     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq165     Document Type: Article
Times cited : (36)

References (25)
  • 1
    • 33750367908 scopus 로고    scopus 로고
    • Extraction of local hydrogen exchange data from HDX CAD MS measurements by deconvolution of isotopic distributions of fragment ions
    • Abzalimov, R.R. and Kaltashov, I.A. (2006) Extraction of local hydrogen exchange data from HDX CAD MS measurements by deconvolution of isotopic distributions of fragment ions. J. Am. Soc. Mass Spectrom., 17, 1543-1551.
    • (2006) J. Am. Soc. Mass Spectrom. , vol.17 , pp. 1543-1551
    • Abzalimov, R.R.1    Kaltashov, I.A.2
  • 2
    • 40549107755 scopus 로고    scopus 로고
    • Comparative LC-MS: a landscape of peaks and valleys
    • America, A.H.P. and Cordewener, J.H.G. (2008) Comparative LC-MS: a landscape of peaks and valleys. Proteomics, 8, 731-749.
    • (2008) Proteomics , vol.8 , pp. 731-749
    • America, A.H.P.1    Cordewener, J.H.G.2
  • 5
    • 0034852208 scopus 로고    scopus 로고
    • An introduction to quadrupole-time-of-flight mass spectrometry
    • Chernushevich, I.V. et al. (2001) An introduction to quadrupole-time-of-flight mass spectrometry. J. Mass Spectrom., 36, 849-865.
    • (2001) J. Mass Spectrom. , vol.36 , pp. 849-865
    • Chernushevich, I.V.1
  • 6
    • 30044445240 scopus 로고    scopus 로고
    • Quantitating the statistical distribution of deuterium incorporation to extend the utility of H/D exchange MS data
    • Chik, J.K. et al. (2006) Quantitating the statistical distribution of deuterium incorporation to extend the utility of H/D exchange MS data. Anal. Chem., 78, 207-214.
    • (2006) Anal. Chem. , vol.78 , pp. 207-214
    • Chik, J.K.1
  • 7
    • 0347357617 scopus 로고    scopus 로고
    • Protein folding and misfolding
    • Dobson, C.M. (2003) Protein folding and misfolding. Nature, 426, 884-890.
    • (2003) Nature , vol.426 , pp. 884-890
    • Dobson, C.M.1
  • 8
    • 3242708140 scopus 로고    scopus 로고
    • Least angle regression
    • Efron, B. et al. (2004) Least angle regression. Ann. Stat., 32, 407-451.
    • (2004) Ann. Stat. , vol.32 , pp. 407-451
    • Efron, B.1
  • 9
    • 70349613463 scopus 로고    scopus 로고
    • Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS
    • Engen, J.R. (2009) Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS. Anal. Chem., 81, 7870-7875.
    • (2009) Anal. Chem. , vol.81 , pp. 7870-7875
    • Engen, J.R.1
  • 10
    • 33750320427 scopus 로고    scopus 로고
    • Hydrogen exchange and mass spectrometry: a historical perspective
    • Englander, S.W. (2006) Hydrogen exchange and mass spectrometry: a historical perspective. J. Am. Soc. Mass Spectrom., 17, 1481-1489.
    • (2006) J. Am. Soc. Mass Spectrom. , vol.17 , pp. 1481-1489
    • Englander, S.W.1
  • 12
    • 0042279172 scopus 로고    scopus 로고
    • Protein analysis by hydrogen exchange mass spectrometry
    • Hoofnagle, A.N. et al. (2003) Protein analysis by hydrogen exchange mass spectrometry. Annu. Rev. Biophys. Biomol. Struct., 32, 1-25.
    • (2003) Annu. Rev. Biophys. Biomol. Struct. , vol.32 , pp. 1-25
    • Hoofnagle, A.N.1
  • 13
    • 33644528769 scopus 로고    scopus 로고
    • Automated extraction of backbone deuteration levels from amide H/2H mass spectrometry experiments
    • Hotchko, M. et al. (2006) Automated extraction of backbone deuteration levels from amide H/2H mass spectrometry experiments. Protein Sci., 15, 583-601.
    • (2006) Protein Sci , vol.15 , pp. 583-601
    • Hotchko, M.1
  • 14
    • 49549086897 scopus 로고    scopus 로고
    • Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches
    • Konermann, L. et al. (2008) Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches. J. Mass Spectrom., 43, 1021-1036.
    • (2008) J. Mass Spectrom. , vol.43 , pp. 1021-1036
    • Konermann, L.1
  • 15
    • 53349173099 scopus 로고    scopus 로고
    • TOF2H: A precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis
    • Nikamanon, P. et al. (2008) "TOF2H": A precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis. BMC Bioinformatics, 9, 387.
    • (2008) BMC Bioinformatics , vol.9 , pp. 387
    • Nikamanon, P.1
  • 16
    • 0035566328 scopus 로고    scopus 로고
    • Automatic analysis of hydrogen/deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions
    • Palmblad, M. et al. (2001) Automatic analysis of hydrogen/deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions. J. Am. Soc. Mass Spectrom., 12, 1153-1162.
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 1153-1162
    • Palmblad, M.1
  • 17
    • 34249341670 scopus 로고    scopus 로고
    • The deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data
    • Pascal, B.D. et al. (2007) The deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data. BMC Bioinformatics, 8, 156.
    • (2007) BMC Bioinformatics , vol.8 , pp. 156
    • Pascal, B.D.1
  • 18
    • 62149090281 scopus 로고    scopus 로고
    • HD desktop: an integrated platform for the analysis and visualization of H/D exchange data
    • Pascal, B.D. et al. (2009) HD desktop: an integrated platform for the analysis and visualization of H/D exchange data. J. Am. Soc. Mass Spectrom., 20, 601-610.
    • (2009) J. Am. Soc. Mass Spectrom. , vol.20 , pp. 601-610
    • Pascal, B.D.1
  • 19
    • 60649091300 scopus 로고    scopus 로고
    • NITPICK: peak identification for mass spectrometry data
    • Renard, B.Y. et al. (2008) NITPICK: peak identification for mass spectrometry data. BMC Bioinformatics, 9, 355.
    • (2008) BMC Bioinformatics , vol.9 , pp. 355
    • Renard, B.Y.1
  • 20
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • Schwarz, G. (1978) Estimating the dimension of a model. Ann. Stat., 6,461-464.
    • (1978) Ann. Stat. , vol.6 , pp. 461-464
    • Schwarz, G.1
  • 21
    • 67649171006 scopus 로고    scopus 로고
    • Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses
    • Slysz, G.W. et al. (2009) Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses. BMC Bioinformatics, 10, 162.
    • (2009) BMC Bioinformatics , vol.10 , pp. 162
    • Slysz, G.W.1
  • 22
    • 0001287271 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the Lasso
    • Tibshirani, R. (1996) Regression shrinkage and selection via the Lasso. J. Roy. Stat. Soc. B, 58, 267-288.
    • (1996) J. Roy. Stat. Soc. B , vol.58 , pp. 267-288
    • Tibshirani, R.1
  • 23
    • 33644761306 scopus 로고    scopus 로고
    • Hydrogen exchange mass spectrometry for the analysis of protein dynamics
    • Wales, T.E. and Engen, J.R. (2006) Hydrogen exchange mass spectrometry for the analysis of protein dynamics. Mass Spectrom. Rev., 25, 158-170.
    • (2006) Mass Spectrom. Rev. , vol.25 , pp. 158-170
    • Wales, T.E.1    Engen, J.R.2
  • 24
    • 33751337111 scopus 로고    scopus 로고
    • Semi-automated data processing of hydrogen exchange mass spectra using HX-Express
    • Weis, D.D. et al. (2006) Semi-automated data processing of hydrogen exchange mass spectra using HX-Express. J. Am. Soc. Mass Spectrom., 17, 1700-1703.
    • (2006) J. Am. Soc. Mass Spectrom. , vol.17 , pp. 1700-1703
    • Weis, D.D.1
  • 25
    • 0031172203 scopus 로고    scopus 로고
    • Enhancement of the effective resolution of mass spectra of high-mass biomolecules by maximum entropy-based deconvolution to eliminate the isotopic natural abundance distribution
    • Zhang, Z. et al. (1997) Enhancement of the effective resolution of mass spectra of high-mass biomolecules by maximum entropy-based deconvolution to eliminate the isotopic natural abundance distribution. J. Am. Soc. Mass Spectrom., 8, 659-670.
    • (1997) J. Am. Soc. Mass Spectrom. , vol.8 , pp. 659-670
    • Zhang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.