-
1
-
-
0034735782
-
Bacterial dehalorespiration with chlorinated benzenes
-
Adrian, L., Szewzyk, U., Wecke, J., and Gorisch, H. (2000) Bacterial dehalorespiration with chlorinated benzenes. Nature 408: 580-583.
-
(2000)
Nature
, vol.408
, pp. 580-583
-
-
Adrian, L.1
Szewzyk, U.2
Wecke, J.3
Gorisch, H.4
-
2
-
-
38449091968
-
Identification of a chlorobenzene reductive dehalogenase in Dehalococcoides sp. strain CBDB1
-
Adrian, L., Rahnenfuhrer, J., Gobom, J., and Holscher, T. (2007a) Identification of a chlorobenzene reductive dehalogenase in Dehalococcoides sp. strain CBDB1. Appl Environ Microbiol 73: 7717-7724.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 7717-7724
-
-
Adrian, L.1
Rahnenfuhrer, J.2
Gobom, J.3
Holscher, T.4
-
3
-
-
34247125335
-
Growth of Dehalococcoides strains with chlorophenols as electron acceptors
-
DOI 10.1021/es062076m
-
Adrian, L., Hansen, S.K., Fung, J.M., Gorisch, H., and Zinder, S.H. (2007b) Growth of Dehalococcoides strains with chlorophenols as electron acceptors. Environ Sci Technol 41: 2318-2323. (Pubitemid 46595192)
-
(2007)
Environmental Science and Technology
, vol.41
, Issue.7
, pp. 2318-2323
-
-
Adrian, L.1
Hansen, S.K.2
Fung, J.M.3
Gorisch, H.4
Zinder, S.H.5
-
4
-
-
67649606879
-
'Dehalococcoides' sp. strain CBDB1 extensively dechlorinates the commercial polychlorinated biphenyl mixture Aroclor 1260
-
Adrian, L., Dudkova, V., Demnerova, K., and Bedard, D.L. (2009) 'Dehalococcoides' sp. strain CBDB1 extensively dechlorinates the commercial polychlorinated biphenyl mixture Aroclor 1260. Appl Environ Microbiol 75: 4516-4524.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4516-4524
-
-
Adrian, L.1
Dudkova, V.2
Demnerova, K.3
Bedard, D.L.4
-
6
-
-
77954158156
-
-
URL
-
Agency for Toxic Substances and Disease Registry (ATSDR) (2002) Toxicological profile for HCB [WWW document]. URL http://www.atsdr.cdc.gov/ toxprofiles/tp90.html.
-
(2002)
Toxicological Profile for HCB [WWW Document]
-
-
-
7
-
-
22244489084
-
The MicrobesOnline Web site for comparative genomics
-
DOI 10.1101/gr.3844805
-
Alm, E.J., Huang, K.H., Price, M.N., Koche, R.P., Keller, K., Dubchak, I.L., and Arkin, A.P. (2005) The MicrobesOnline web site for comparative genomics. Genome Res 15: 1015-1022. (Pubitemid 40994222)
-
(2005)
Genome Research
, vol.15
, Issue.7
, pp. 1015-1022
-
-
Alm, E.J.1
Huang, K.H.2
Price, M.N.3
Koche, R.P.4
Keller, K.5
Dubchak, I.L.6
Arkin, A.P.7
-
8
-
-
0035103417
-
Global hexachlorobenzene emissions
-
Bailey, R.E. (2001) Global hexachlorobenzene emissions. Chemosphere 43: 167-182.
-
(2001)
Chemosphere
, vol.43
, pp. 167-182
-
-
Bailey, R.E.1
-
9
-
-
0842325225
-
Properties of a trichlorodibenzo-p-dioxin-dechlorinating mixed culture with a Dehalococcoides as putative dechlorinating species
-
DOI 10.1016/S0168-6496(03)00282-4
-
Ballerstedt, H., Hantke, J., Bunge, M., Werner, B., Gerritse, J., Andreesen, J.R., and Lechner, U. (2004) Properties of a trichlorodibenzo-p- dioxin-dechlorinating mixed culture with a Dehalococcoides as putative dechlorinating species. FEMS Microbiol Ecol 47: 223-234. (Pubitemid 38180558)
-
(2004)
FEMS Microbiology Ecology
, vol.47
, Issue.2
, pp. 223-234
-
-
Ballerstedt, H.1
Hantke, J.2
Bunge, M.3
Werner, B.4
Gerritse, J.5
Andreesen, J.R.6
Lechner, U.7
-
10
-
-
26444465561
-
Hexachlorobenzene in the global environment: Emissions, levels, distribution, trends and processes
-
Barber, J.L., Sweetman, A.J., van Wijk, D., and Jones, K.C. (2005) Hexachlorobenzene in the global environment: emissions, levels, distribution, trends and processes. Sci Total Environ 349: 1-44.
-
(2005)
Sci Total Environ
, vol.349
, pp. 1-44
-
-
Barber, J.L.1
Sweetman, A.J.2
Van Wijk, D.3
Jones, K.C.4
-
12
-
-
34247616660
-
The Dehalococcoides population in sediment-free mixed cultures metabolically dechlorinates the commercial polychlorinated biphenyl mixture Aroclor 1260
-
Bedard, D.L., Ritalahti, K.M., and Loffler, F.E. (2007) The Dehalococcoides population in sediment-free mixed cultures metabolically dechlorinates the commercial polychlorinated biphenyl mixture Aroclor 1260. Appl Environ Microbiol 73: 2513-2521.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2513-2521
-
-
Bedard, D.L.1
Ritalahti, K.M.2
Loffler, F.E.3
-
13
-
-
0004100985
-
-
Amsterdam, the Netherlands: Jaarboek van de Koninklijke Akademie v. Wetenschappen
-
Beijerinck, M. (1913) De Infusies en de Ontdekking der Backterien. Amsterdam, the Netherlands: Jaarboek van de Koninklijke Akademie v. Wetenschappen.
-
(1913)
De Infusies en de Ontdekking der Backterien
-
-
Beijerinck, M.1
-
14
-
-
66649099076
-
Possible role of reactive chlorine in microbial antagonism and organic matter chlorination in terrestrial environments
-
Bengtson, P., Bastviken, D., de Boer, W., and Öberg, G. (2009) Possible role of reactive chlorine in microbial antagonism and organic matter chlorination in terrestrial environments. Environ Microbiol 11: 1330-1339.
-
(2009)
Environ Microbiol
, vol.11
, pp. 1330-1339
-
-
Bengtson, P.1
Bastviken, D.2
De Boer, W.3
Öberg, G.4
-
15
-
-
33748490305
-
Bacterial diversity of an acidic Louisiana groundwater contaminated by dense nonaqueous-phase liquid containing chloroethanes and other solvents
-
Bowman, K.S., Moe, W.M., Rash, B.A., Bae, H.S., and Rainey, F.A. (2006) Bacterial diversity of an acidic Louisiana groundwater contaminated by dense nonaqueous-phase liquid containing chloroethanes and other solvents. FEMS Microbiol Ecol 58: 120-133.
-
(2006)
FEMS Microbiol Ecol
, vol.58
, pp. 120-133
-
-
Bowman, K.S.1
Moe, W.M.2
Rash, B.A.3
Bae, H.S.4
Rainey, F.A.5
-
16
-
-
0346319020
-
Reductive dehalogenation of chlorinated dioxins by an anaerobic bacterium
-
Bunge, M., Adrian, L., Kraus, A., Opel, M., Lorenz, W.G., Andreesen, J.R., et al. (2003) Reductive dehalogenation of chlorinated dioxins by an anaerobic bacterium. Nature 421: 357.
-
(2003)
Nature
, vol.421
, pp. 357
-
-
Bunge, M.1
Adrian, L.2
Kraus, A.3
Opel, M.4
Lorenz, W.G.5
Andreesen, J.R.6
-
17
-
-
34248399627
-
Biological activity in a heavily organohalogen-contaminated river sediment
-
DOI 10.1065/espr2006.10.356
-
Bunge, M., Kähkönen, M., Rämisch, W., Opel, M., Vogler, S., Walkow, F., et al. (2007) Biological activity in a heavily organohalogen-contaminated river sediment. Environ Sci Pollut Res 14: 3-10. (Pubitemid 46732434)
-
(2007)
Environmental Science and Pollution Research
, vol.14
, Issue.1 SPEC. ISS
, pp. 3-10
-
-
Bunge, M.1
Kahkonen, M.A.2
Ramisch, W.3
Opel, M.4
Vogler, S.5
Walkow, F.6
Salkinoja-Salonen, M.7
Lechner, U.8
-
18
-
-
51649117275
-
Enrichment of a dioxin-dehalogenating Dehalococcoides species in two-liquid phase cultures
-
Bunge, M., Wagner, A., Fischer, M., Andreesen, J.R., and Lechner, U. (2008) Enrichment of a dioxin-dehalogenating Dehalococcoides species in two-liquid phase cultures. Environ Microbiol 10: 2670-2683.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2670-2683
-
-
Bunge, M.1
Wagner, A.2
Fischer, M.3
Andreesen, J.R.4
Lechner, U.5
-
19
-
-
57549085774
-
Detection and quantification of Dehalococcoides-related bacteria in a chlorinated ethene-contaminated aquifer undergoing natural attenuation
-
Bürgmann, H., Kleikemper, J., Duc, L., Bunge, M., Schroth, M., and Zeyer, J. (2008) Detection and quantification of Dehalococcoides-related bacteria in a chlorinated ethene-contaminated aquifer undergoing natural attenuation. Bioremediation J 12: 193-209.
-
(2008)
Bioremediation J
, vol.12
, pp. 193-209
-
-
Bürgmann, H.1
Kleikemper, J.2
Duc, L.3
Bunge, M.4
Schroth, M.5
Zeyer, J.6
-
20
-
-
70149123013
-
Isolation and characterization of 'Dehalococcoides' sp. strain MB that dechlorinates tetrachloroethene to trans-1, 2-dichloroethene
-
doi: 10.1128/AEM.00767-09
-
Cheng, D., and He, J. (2009) Isolation and characterization of 'Dehalococcoides' sp. strain MB that dechlorinates tetrachloroethene to trans-1, 2-dichloroethene. Appl Environ Microbiol doi: 10.1128/AEM.00767-09.
-
(2009)
Appl Environ Microbiol
-
-
Cheng, D.1
He, J.2
-
21
-
-
40949148696
-
Bioreduction of trichloroethene using a hydrogen-based membrane biofilm reactor
-
DOI 10.1021/es702422d
-
Chung, J., Krajmalnik-Brown, R., and Rittmann, B.E. (2008) Bioreduction of trichloroethene using a hydrogen-based membrane biofilm reactor. Environ Sci Technol 42: 477-483. (Pubitemid 351461897)
-
(2008)
Environmental Science and Technology
, vol.42
, Issue.2
, pp. 477-483
-
-
Chung, J.1
Krajmalnik-Brown, R.2
Rittmann, B.E.3
-
22
-
-
0037135082
-
Determination of polychlorinated biphenyl compounds in indoor air samples
-
Criado, M.R., Pereiro, I.R., and Torrijos, R.C. (2002) Determination of polychlorinated biphenyl compounds in indoor air samples. J Chromatogr A 963: 65-71.
-
(2002)
J Chromatogr A
, vol.963
, pp. 65-71
-
-
Criado, M.R.1
Pereiro, I.R.2
Torrijos, R.C.3
-
23
-
-
0037315711
-
Growth of a Dehalococcoides-like microorganism on vinyl chloride and cis-dichloroethene as electron acceptors as determined by competitive PCR
-
Cupples, A.M., Spormann, A.M., and McCarty, P.L. (2003) Growth of a Dehalococcoides-like microorganism on vinyl chloride and cis-dichloroethene as electron acceptors as determined by competitive PCR. Appl Environ Microbiol 69: 953-959.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 953-959
-
-
Cupples, A.M.1
Spormann, A.M.2
McCarty, P.L.3
-
24
-
-
0043264411
-
Decision No. 2455/2001/EC of the European Parliament and of the Council of 20 November 2001. The list of priority substances in the field of water policy and amending Directive 2000/60/EC
-
Decision No. 2455/2001/EC
-
Decision No. 2455/2001/EC (2001) Decision No. 2455/2001/EC of the European Parliament and of the Council of 20 November 2001. The list of priority substances in the field of water policy and amending Directive 2000/60/EC. OJ L 331: 1-5.
-
(2001)
OJ L
, vol.331
, pp. 1-5
-
-
-
25
-
-
22144489001
-
Thermodynamic considerations for dehalogenation
-
Haggblom, M.M., and Bossert, I.D. (eds). Dordrecht, the Netherlands: Kluwer Academic Publishers
-
Dolfing, J. (2003) Thermodynamic considerations for dehalogenation. In Dehalogenation: Microbial Processes and Environmental Applications. Haggblom, M.M., and Bossert, I.D. (eds). Dordrecht, the Netherlands: Kluwer Academic Publishers, pp. 89-114.
-
(2003)
Dehalogenation: Microbial Processes and Environmental Applications
, pp. 89-114
-
-
Dolfing, J.1
-
26
-
-
66049109679
-
Improving phytoremediation through biotechnology
-
Dowling, D.N., and Doty, S.L. (2009) Improving phytoremediation through biotechnology. Curr Opin Biotechnol 20: 204-206.
-
(2009)
Curr Opin Biotechnol
, vol.20
, pp. 204-206
-
-
Dowling, D.N.1
Doty, S.L.2
-
27
-
-
34247125336
-
Growth and yields of dechlorinators, acetogens, and methanogens during reductive dechlorination of chlorinated ethenes and dihaloelimination of 1,2-dichloroethane
-
DOI 10.1021/es062010r
-
Duhamel, M., and Edwards, E.A. (2007) Growth and yields of dechlorinators, acetogens, and methanogens during reductive dechlorination of chlorinated ethenes and dihaloelimination of 1,2-dichloroethane. Environ Sci Technol 41: 2303-2310. (Pubitemid 46595190)
-
(2007)
Environmental Science and Technology
, vol.41
, Issue.7
, pp. 2303-2310
-
-
Duhamel, M.1
Edwards, E.A.2
-
28
-
-
0036771968
-
Comparison of anaerobic dechlorinating enrichment cultures maintained on tetrachloroethene, trichloroethene, cis-dichloroethene and vinyl chloride
-
DOI 10.1016/S0043-1354(02)00151-3, PII S0043135402001513
-
Duhamel, M., Wehr, S.D., Yu, L., Rizvi, H., Seepersad, D., Dworatzek, S., et al. (2002) Comparison of anaerobic dechlorinating enrichment cultures maintained on tetrachloroethene, trichloroethene, cis-dichloroethene and vinyl chloride. Water Res 36: 4193-4202. (Pubitemid 35286856)
-
(2002)
Water Research
, vol.36
, Issue.17
, pp. 4193-4202
-
-
Duhamel, M.1
Wehr, S.D.2
Yu, L.3
Rizvi, H.4
Seepersad, D.5
Dworatzek, S.6
Cox, E.E.7
Edwards, E.A.8
-
29
-
-
4644239145
-
Characterization of a highly enriched Dehalococcoides-containing culture that grows on vinyl chloride and trichloroethene
-
DOI 10.1128/AEM.70.9.5538-5545.2004
-
Duhamel, M., Mo, K., and Edwards, E.A. (2004) Characterization of a highly enriched Dehalococcoides-containing culture that grows on vinyl chloride and trichloroethene. Appl Environ Microbiol 70: 5538-5545. (Pubitemid 39279632)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.9
, pp. 5538-5545
-
-
Duhamel, M.1
Mo, K.2
Edwards, E.A.3
-
30
-
-
0035191260
-
The potential of anaerobic bacteria to degrade chlorinated compounds
-
van Eekert, M.H.A., and Schraa, G. (2001) The potential of anaerobic bacteria to degrade chlorinated compounds. Water Sci Technol 44: 49-56. (Pubitemid 33081011)
-
(2001)
Water Science and Technology
, vol.44
, Issue.8
, pp. 49-56
-
-
Van Eekert, M.H.A.1
Schraa, G.2
-
31
-
-
0034195279
-
Bioaugmentation for accelerated in situ anaerobic bioremediation
-
DOI 10.1021/es990638e
-
Ellis, D.E., Lutz, E.J., Odom, J.M., Buchanan, R.J., Bartlett, C.L., Lee, M.D., et al. (2000) Bioaugmentation for accelerated in situ anaerobic bioremediation. Environ Sci Technol 34: 2254-2260. (Pubitemid 30396846)
-
(2000)
Environmental Science and Technology
, vol.34
, Issue.11
, pp. 2254-2260
-
-
Ellis, D.E.1
Lutz, E.J.2
Odom, J.M.3
Buchanan Jr., R.J.4
Bartlett, C.L.5
Lee, M.D.6
Harkness, M.R.7
Deweerd, K.A.8
-
32
-
-
1842627895
-
Dehalococcoides ethenogenes Strain 195 Reductively Dechlorinates Diverse Chlorinated Aromatic Pollutants
-
DOI 10.1021/es034989b
-
Fennell, D.E., Nijenhuis, I., Wilson, S.F., Zinder, S.H., and Haggblom, M.M. (2004) Dehalococcoides ethenogenes strain 195 reductively dechlorinates diverse chlorinated aromatic pollutants. Environ Sci Technol 38: 2075-2081. (Pubitemid 38468808)
-
(2004)
Environmental Science and Technology
, vol.38
, Issue.7
, pp. 2075-2081
-
-
Fennell, D.E.1
Nijenhuis, I.2
Wilson, S.F.3
Zinder, S.H.4
Haggblom, M.M.5
-
33
-
-
40949091017
-
Microbial degradation of chlorinated dioxins
-
Field, J.A., and Sierra-Alvarez, R. (2008) Microbial degradation of chlorinated dioxins. Chemosphere 71: 1005-1018.
-
(2008)
Chemosphere
, vol.71
, pp. 1005-1018
-
-
Field, J.A.1
Sierra-Alvarez, R.2
-
35
-
-
34547220974
-
Expression of reductive dehalogenase genes in Dehalococcoides ethenogenes strain 195 growing on tetrachloroethene, trichloroethene, or 2,3-dichlorophenol
-
DOI 10.1128/AEM.00215-07
-
Fung, J.M., Morris, R.M., Adrian, L., and Zinder, S.H. (2007) Expression of reductive dehalogenase genes in Dehalococcoides ethenogenes strain 195 growing on tetrachloroethene, trichloroethene, or 2,3-dichlorophenol. Appl Environ Microbiol 73: 4439-4445. (Pubitemid 47122586)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.14
, pp. 4439-4445
-
-
Fung, J.M.1
Morris, R.M.2
Adrian, L.3
Zinder, S.H.4
-
36
-
-
34948844066
-
Reductive dechlorination of chloroethenes by Dehalococcoides-containing cultures enriched from a polychlorinated-dioxin-contaminated microcosm
-
DOI 10.1038/ismej.2007.42, PII ISMEJ200742
-
Futamata, H., Yoshida, N., Kurogi, T., Kaiya, S., and Hiraishi, A. (2007) Reductive dechlorination of chloroethenes by Dehalococcoides-containing cultures enriched from a polychlorinated-dioxin-contaminated microcosm. ISME J 1: 471-479. (Pubitemid 47530653)
-
(2007)
ISME Journal
, vol.1
, Issue.6
, pp. 471-479
-
-
Futamata, H.1
Yoshida, N.2
Kurogi, T.3
Kaiya, S.4
Hiraishi, A.5
-
37
-
-
0038324086
-
The diversity of naturally produced organohalogens
-
Gribble, G.W. (2003) The diversity of naturally produced organohalogens. Chemosphere 52: 289-297.
-
(2003)
Chemosphere
, vol.52
, pp. 289-297
-
-
Gribble, G.W.1
-
38
-
-
2442551474
-
Stable carbon isotope fractionation during aerobic and anaerobic transformation of trichlorobenzene
-
Griebler, C., Adrian, L., Meckenstock, R.U., and Richnow, H.H. (2004) Stable carbon isotope fractionation during aerobic and anaerobic transformation of trichlorobenzene. FEMS Microbiol Ecol 48: 313.
-
(2004)
FEMS Microbiol Ecol
, vol.48
, pp. 313
-
-
Griebler, C.1
Adrian, L.2
Meckenstock, R.U.3
Richnow, H.H.4
-
39
-
-
33644848896
-
Growth of Dehalobacter and Dehalococcoides spp. during degradation of chlorinated ethanes
-
Grostern, A., and Edwards, E.A. (2006) Growth of Dehalobacter and Dehalococcoides spp. during degradation of chlorinated ethanes. Appl Environ Microbiol 72: 428-436.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 428-436
-
-
Grostern, A.1
Edwards, E.A.2
-
40
-
-
33646753607
-
Atmospheric deposition of current-use and historic-use pesticides in snow at National Parks in the Western United States
-
DOI 10.1021/es060157c
-
Hageman, K.J., Simonich, S.L., Campbell, D.H., Wilson, G.R., and Landers, D.H. (2006) Atmospheric deposition of current-use and historic-use pesticides in snow at national parks in the western United States. Environ Sci Technol 40: 3174-3180. (Pubitemid 43752670)
-
(2006)
Environmental Science and Technology
, vol.40
, Issue.10
, pp. 3174-3180
-
-
Hageman, K.J.1
Simonich, S.L.2
Campbell, D.H.3
Wilson, G.R.4
Landers, D.H.5
-
41
-
-
0033118951
-
Use of bioaugmentation to stimulate complete reductive dechlorination of trichloroethene in Dover soil columns
-
Harkness, M.R., Bracco, A.A., Brennan, M.J., DeWeerd, K.A., and Spivack, J.L. (1999) Use of bioaugmentation to stimulate complete reductive dechlorination of trichloroethene in Dover soil columns. Environ Sci Technol 33: 1100-1109.
-
(1999)
Environ Sci Technol
, vol.33
, pp. 1100-1109
-
-
Harkness, M.R.1
Bracco, A.A.2
Brennan, M.J.3
DeWeerd, K.A.4
Spivack, J.L.5
-
42
-
-
0038264087
-
Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium
-
He, J., Ritalahti, K.M., Yang, K.-L., Koenigsberg, S.S., and Loffler, F.E. (2003) Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium. Nature 424: 62.
-
(2003)
Nature
, vol.424
, pp. 62
-
-
He, J.1
Ritalahti, K.M.2
Yang, K.-L.3
Koenigsberg, S.S.4
Loffler, F.E.5
-
43
-
-
23944434942
-
Isolation and characterization of Dehalococcoides sp. strain FL2, a trichloroethene (TCE)- And 1,2-dichloroethene-respiring anaerobe
-
DOI 10.1111/j.1462-2920.2005.00830.x
-
He, J., Sung, Y., Krajmalnik-Brown, R., Ritalahti, K.M., and Loffler, F.E. (2005) Isolation and characterization of Dehalococcoides sp. strain FL2, a trichloroethene (TCE)- and 1,2-dichloroethene-respiring anaerobe. Environ Microbiol 7: 1442-1450. (Pubitemid 41204937)
-
(2005)
Environmental Microbiology
, vol.7
, Issue.9
, pp. 1442-1450
-
-
He, J.1
Sung, Y.2
Krajmalnik-Brown, R.3
Ritalahti, K.M.4
Loffler, F.E.5
-
44
-
-
34248159046
-
GeoChip: A comprehensive microarray for investigating biogeochemical, ecological and environmental processes
-
He, Z., Gentry, T.J., Schadt, C.W., Wu, L., Liebich, J., Chong, S.C., et al. (2007) GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J 1: 67.
-
(2007)
ISME J
, vol.1
, pp. 67
-
-
He, Z.1
Gentry, T.J.2
Schadt, C.W.3
Wu, L.4
Liebich, J.5
Chong, S.C.6
-
45
-
-
0036151753
-
Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe
-
DOI 10.1128/AEM.68.2.485-495.2002
-
Hendrickson, E.R., Payne, J.A., Young, R.M., Starr, M.G., Perry, M.P., Fahnestock, S., et al. (2002) Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe. Appl Environ Microbiol 68: 485-495. (Pubitemid 34113032)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.2
, pp. 485-495
-
-
Hendrickson, E.R.1
Payne, J.A.2
Young, R.M.3
Starr, M.G.4
Perry, M.P.5
Fahnestock, S.6
Ellis, D.E.7
Ebersole, R.C.8
-
46
-
-
61849098814
-
Microbial colonization of an in situ sediment cap and correlation to stratified redox zones
-
Himmelheber, D.W., Thomas, S.H., Löffler, F.E., Taillefert, M., and Hughes, J.B. (2009) Microbial colonization of an in situ sediment cap and correlation to stratified redox zones. Environ Sci Technol 43: 66-74.
-
(2009)
Environ Sci Technol
, vol.43
, pp. 66-74
-
-
Himmelheber, D.W.1
Thomas, S.H.2
Löffler, F.E.3
Taillefert, M.4
Hughes, J.B.5
-
47
-
-
0032450045
-
Reductive dechlorination in the energy metabolism of anaerobic bacteria
-
DOI 10.1016/S0168-6445(98)00030-8, PII S0168644598000308
-
Holliger, C., Wohlfarth, G., and Diekert, G. (1998) Reductive dechlorination in the energy metabolism of anaerobic bacteria. FEMS Microbiol Rev 22: 383-398. (Pubitemid 29074343)
-
(1998)
FEMS Microbiology Reviews
, vol.22
, Issue.5
, pp. 383-398
-
-
Holliger, C.1
Wohlfarth, G.2
Diekert, G.3
-
48
-
-
33748779279
-
Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes
-
DOI 10.1128/AEM.00516-06
-
Holmes, V.F., He, J., Lee, P.K., and Alvarez-Cohen, L. (2006) Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes. Appl Environ Microbiol 72: 5877-5883. (Pubitemid 44414614)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.9
, pp. 5877-5883
-
-
Holmes, V.F.1
He, J.2
Lee, P.K.H.3
Alvarez-Cohen, L.4
-
49
-
-
4644372801
-
Multiple nonidentical reductive-dehalogenase-homologous genes are common in Dehalococcoides
-
DOI 10.1128/AEM.70.9.5290-5297.2004
-
Holscher, T., Krajmalnik-Brown, R., Ritalahti, K.M., Von Wintzingerode, F., Gorisch, H., Loffler, F.E., and Adrian, L. (2004) Multiple nonidentical reductive-dehalogenase-homologous genes are common in Dehalococcoides. Appl Environ Microbiol 70: 5290-5297. (Pubitemid 39279602)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.9
, pp. 5290-5297
-
-
Holscher, T.1
Krajmalnik-Brown, R.2
Ritalahti, K.M.3
Von Wintzingerode, F.4
Gorisch, H.5
Loffler, F.E.6
Adrian, L.7
-
50
-
-
38949202628
-
Assessment of in situ degradation of chlorinated ethenes and bacterial community structure in a complex contaminated groundwater system
-
DOI 10.1016/j.watres.2007.08.035, PII S0043135407005799
-
Imfeld, G., Nijenhuis, I., Nikolausz, M., Zeiger, S., Paschke, H., Drangmeister, J., et al. (2008) Assessment of in situ degradation of chlorinated ethenes and bacterial community structure in a complex contaminated groundwater system. Water Res 42: 871-882. (Pubitemid 351231950)
-
(2008)
Water Research
, vol.42
, Issue.4-5
, pp. 871-882
-
-
Imfeld, G.1
Nijenhuis, I.2
Nikolausz, M.3
Zeiger, S.4
Paschke, H.5
Drangmeister, J.6
Grossmann, J.7
Richnow, H.H.8
Weber, S.9
-
51
-
-
66049148589
-
Phytoremediation of small organic contaminants using transgenic plants
-
James, C.A., and Strand, S.E. (2009) Phytoremediation of small organic contaminants using transgenic plants. Curr Opin Biotechnol 20: 237-241.
-
(2009)
Curr Opin Biotechnol
, vol.20
, pp. 237-241
-
-
James, C.A.1
Strand, S.E.2
-
52
-
-
68649127870
-
A mass balance study of the phytoremediation of perchloroethylene- contaminated groundwater
-
doi: 10.1016/J.envpol.2009.02.33
-
James, C.A., Xin, G., Doty, S.L., Muiznieks, I., Newman, L., and Strand, S.E. (2009) A mass balance study of the phytoremediation of perchloroethylene- contaminated groundwater. Environ Pollut doi: 10.1016/J.envpol.2009.02.33.
-
(2009)
Environ Pollut
-
-
James, C.A.1
Xin, G.2
Doty, S.L.3
Muiznieks, I.4
Newman, L.5
Strand, S.E.6
-
53
-
-
43049147593
-
Temporal transcriptomic microarray analysis of 'Dehalococcoides ethenogenes' strain 195 during the transition into stationary phase
-
Johnson, D.R., Brodie, E.L., Hubbard, A.E., Andersen, G.L., Zinder, S.H., and Alvarez-Cohen, L. (2008) Temporal transcriptomic microarray analysis of 'Dehalococcoides ethenogenes' strain 195 during the transition into stationary phase. Appl Environ Microbiol 74: 2864-2872.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2864-2872
-
-
Johnson, D.R.1
Brodie, E.L.2
Hubbard, A.E.3
Andersen, G.L.4
Zinder, S.H.5
Alvarez-Cohen, L.6
-
54
-
-
51349161191
-
High-resolution metagenomics targets specific functional types in complex microbial communities
-
Kalyuzhnaya, M.G., Lapidus, A., Ivanova, N., Copeland, A.C., McHardy, A.C., Szeto, E., et al. (2008) High-resolution metagenomics targets specific functional types in complex microbial communities. Nat Biotechnol 26: 1029-1034.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1029-1034
-
-
Kalyuzhnaya, M.G.1
Lapidus, A.2
Ivanova, N.3
Copeland, A.C.4
McHardy, A.C.5
Szeto, E.6
-
55
-
-
38149133071
-
Identification of novel perchloroethene-respiring microorganisms in anoxic river sediment by RNA-based stable isotope probing
-
Kittelmann, S., and Friedrich, M.W. (2008) Identification of novel perchloroethene-respiring microorganisms in anoxic river sediment by RNA-based stable isotope probing. Environ Microbiol 10: 31-46.
-
(2008)
Environ Microbiol
, vol.10
, pp. 31-46
-
-
Kittelmann, S.1
Friedrich, M.W.2
-
56
-
-
8144229485
-
Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1
-
DOI 10.1128/AEM.70.10.6347-6351.2004
-
Krajmalnik-Brown, R., Holscher, T., Thomson, I.N., Saunders, F.M., Ritalahti, K.M., and Loffler, F.E. (2004) Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1. Appl Environ Microbiol 70: 6347-6351. (Pubitemid 39471893)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.10
, pp. 6347-6351
-
-
Krajmalnik-Brown, R.1
Holscher, T.2
Thomson, I.N.3
Saunders, F.M.4
Ritalahti, K.M.5
Loffler, F.E.6
-
57
-
-
27144500225
-
Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1
-
Kube, M., Beck, A., Zinder, S.H., Kuhl, H., Reinhardt, R., and Adrian, L. (2005) Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1. Nat Biotechnol 23: 1269.
-
(2005)
Nat Biotechnol
, vol.23
, pp. 1269
-
-
Kube, M.1
Beck, A.2
Zinder, S.H.3
Kuhl, H.4
Reinhardt, R.5
Adrian, L.6
-
58
-
-
33344463874
-
Pilot survey of a broad range of priority pollutants in sediment and fish from the Ebro river basin (NE Spain)
-
DOI 10.1016/j.envpol.2005.08.008, PII S0269749105004124
-
Lacorte, S., Raldua, D., Martinez, E., Navarro, A., Diez, S., Bayona, J.M., and Barcelo, D. (2006) Pilot survey of a broad range of priority pollutants in sediment and fish from the Ebro river basin (NE Spain). Environ Pollut 140: 471-482. (Pubitemid 43288045)
-
(2006)
Environmental Pollution
, vol.140
, Issue.3
, pp. 471-482
-
-
Lacorte, S.1
Raldua, D.2
Martinez, E.3
Navarro, A.4
Diez, S.5
Bayona, J.M.6
Barcelo, D.7
-
59
-
-
34347257826
-
Performance monitoring of remediation technologies for soil and groundwater contamination: Review
-
Lai, K.C.K., Surampalli, R.Y., Tyagi, R.D., Lo, I.M.C., and Yan, S. (2007) Performance monitoring of remediation technologies for soil and groundwater contamination: review. Pract Periodical of Haz, Toxic, and Radioactive Waste Mgmt 11: 132-157.
-
(2007)
Pract Periodical of Haz, Toxic, and Radioactive Waste Mgmt
, vol.11
, pp. 132-157
-
-
Lai, K.C.K.1
Surampalli, R.Y.2
Tyagi, R.D.3
Lo, I.M.C.4
Yan, S.5
-
60
-
-
43049130733
-
Quantifying genes and transcripts to assess the in situ physiology of 'Dehalococcoides' spp. in a trichloroethene-contaminated groundwater site
-
Lee, P.K.H., Macbeth, T.W., Sorenson, K.S., Jr, Deeb, R.A., and Alvarez-Cohen, L. (2008) Quantifying genes and transcripts to assess the in situ physiology of 'Dehalococcoides' spp. in a trichloroethene-contaminated groundwater site. Appl Environ Microbiol 74: 2728-2739.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2728-2739
-
-
Lee, P.K.H.1
Macbeth, T.W.2
Sorenson Jr., K.S.3
Deeb, R.A.4
Alvarez-Cohen, L.5
-
61
-
-
0037394204
-
Bioreactive barriers: A comparison of bioaugmentation and biostimulation for chlorinated solvent remediation
-
Lendvay, J.M., Loffler, F.E., Dollhopf, M., Aiello, M.R., Daniels, G., Fathepure, B.Z., et al. (2003) Bioreactive barriers: a comparison of bioaugmentation and biostimulation for chlorinated solvent remediation. Environ Sci Technol 37: 1422-1431.
-
(2003)
Environ Sci Technol
, vol.37
, pp. 1422-1431
-
-
Lendvay, J.M.1
Loffler, F.E.2
Dollhopf, M.3
Aiello, M.R.4
Daniels, G.5
Fathepure, B.Z.6
-
62
-
-
0141919038
-
16S rRNA gene-based detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species
-
DOI 10.1128/AEM.66.4.1369-1374.2000
-
Löffler, F.E., Sun, Q., Li, J., and Tiedje, J.M. (2000) 16S rRNA gene-based detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species. Appl Environ Microbiol 66: 1369-1374. (Pubitemid 30185603)
-
(2000)
Applied and Environmental Microbiology
, vol.66
, Issue.4
, pp. 1369-1374
-
-
Loffler, F.E.1
Sun, Q.2
Li, J.3
Tiedje, J.M.4
-
63
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
-
64
-
-
35748959318
-
What's in the mix: Phylogenetic classification of metagenome sequence samples
-
McHardy, A.C., and Rigoutsos, I. (2007) What's in the mix: phylogenetic classification of metagenome sequence samples. Curr Opin Microbiol 10: 499-503.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 499-503
-
-
McHardy, A.C.1
Rigoutsos, I.2
-
65
-
-
34247600158
-
Unusual codon bias in vinyl chloride reductase genes of Dehalococcoides species
-
DOI 10.1128/AEM.02768-06
-
McMurdie, P.J., Behrens, S.F., Holmes, S., and Spormann, A.M. (2007) Unusual codon bias in vinyl chloride reductase genes of Dehalococcoides species. Appl Environ Microbiol 73: 2744-2747. (Pubitemid 46668769)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.8
, pp. 2744-2747
-
-
McMurdie, P.J.1
Behrens, S.F.2
Holmes, S.3
Spormann, A.M.4
-
66
-
-
77954154533
-
Comparative genomics of two vinyl chloride respiring bacteria, Dehalococcoides sp. strains VS and BAV1
-
McMurdie, P.J., Behrens, S.F., Muller, J., Goke, J., Loffler, F.E., and Spormann, A.M. (2008) Comparative genomics of two vinyl chloride respiring bacteria, Dehalococcoides sp. strains VS and BAV1. In The 12th International Symposium on Microbial Ecology ISME-12. Cairns, Australia.
-
(2008)
The 12th International Symposium on Microbial Ecology ISME-12. Cairns, Australia
-
-
McMurdie, P.J.1
Behrens, S.F.2
Muller, J.3
Goke, J.4
Loffler, F.E.5
Spormann, A.M.6
-
67
-
-
0036882667
-
Field demonstration of successful bioaugmentation to achieve dechlorination of tetrachloroethene to ethene
-
Major, D.W., McMaster, M.L., Cox, E.E., Edwards, E.A., Dworatzek, S.M., Hendrickson, E.R., et al. (2002) Field demonstration of successful bioaugmentation to achieve dechlorination of tetrachloroethene to ethene. Environ Sci Technol 36: 5106-5116.
-
(2002)
Environ Sci Technol
, vol.36
, pp. 5106-5116
-
-
Major, D.W.1
McMaster, M.L.2
Cox, E.E.3
Edwards, E.A.4
Dworatzek, S.M.5
Hendrickson, E.R.6
-
68
-
-
33747881518
-
An experimental metagenome data management and analysis system
-
Markowitz, V.M., Ivanova, N., Palaniappan, K., Szeto, E., Korzeniewski, F., Lykidis, A., et al. (2006) An experimental metagenome data management and analysis system. Bioinformatics 22: e359-e367.
-
(2006)
Bioinformatics
, vol.22
-
-
Markowitz, V.M.1
Ivanova, N.2
Palaniappan, K.3
Szeto, E.4
Korzeniewski, F.5
Lykidis, A.6
-
69
-
-
38549139537
-
IMG/M: A data management and analysis system for metagenomes
-
Markowitz, V.M., Ivanova, N.N., Szeto, E., Palaniappan, K., Chu, K., Dalevi, D., et al. (2008) IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res 36: D534-D538.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Markowitz, V.M.1
Ivanova, N.N.2
Szeto, E.3
Palaniappan, K.4
Chu, K.5
Dalevi, D.6
-
70
-
-
34248165412
-
Metaproteomics: A new approach for studying functional microbial ecology
-
Maron, P.-A., Ranjard, L., Mougel, C., and Lemanceau, P. (2007) Metaproteomics: a new approach for studying functional microbial ecology. Microb Ecol 53: 486-493.
-
(2007)
Microb Ecol
, vol.53
, pp. 486-493
-
-
Maron, P.-A.1
Ranjard, L.2
Mougel, C.3
Lemanceau, P.4
-
71
-
-
31544448331
-
Microbial biogeography: Putting microorganisms on the map
-
Martiny, J.B.H., Bohannan, B.J.M., Brown, J.H., Colwell, R.K., Fuhrman, J.A., Green, J.L., et al. (2006) Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol 4: 102-112.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
-
72
-
-
42049109269
-
Dehalorespiration with polychlorinated biphenyls by an anaerobic ultramicrobacterium
-
May, H.D., Miller, G.S., Kjellerup, B.V., and Sowers, K.R. (2008) Dehalorespiration with polychlorinated biphenyls by an anaerobic ultramicrobacterium. Appl Environ Microbiol 74: 2089-2094.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2089-2094
-
-
May, H.D.1
Miller, G.S.2
Kjellerup, B.V.3
Sowers, K.R.4
-
73
-
-
0344622120
-
Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
-
Maymo-Gatell, X., Chien, Y.-T., Gossett, J.M., and Zinder, S.H. (1997) Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. Science 276: 1568-1571.
-
(1997)
Science
, vol.276
, pp. 1568-1571
-
-
Maymo-Gatell, X.1
Chien, Y.-T.2
Gossett, J.M.3
Zinder, S.H.4
-
74
-
-
0345535769
-
Reductive dechlorination of chlorinated ethenes and 1, 2-dichloroethane by 'Dehalococcoides ethenogenes' 195
-
Maymo-Gatell, X., Anguish, T., and Zinder, S.H. (1999) Reductive dechlorination of chlorinated ethenes and 1, 2-dichloroethane by 'Dehalococcoides ethenogenes' 195. Appl Environ Microbiol 65: 3108-3113.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3108-3113
-
-
Maymo-Gatell, X.1
Anguish, T.2
Zinder, S.H.3
-
75
-
-
0037442907
-
Global distribution and budget of PCBs and HCB in background surface soils: Implications for sources and environmental processes
-
Meijer, S.N., Ockenden, W.A., Sweetman, A., Breivik, K., Grimalt, J.O., and Jones, K.C. (2003) Global distribution and budget of PCBs and HCB in background surface soils: implications for sources and environmental processes. Environ Sci Technol 37: 667-672.
-
(2003)
Environ Sci Technol
, vol.37
, pp. 667-672
-
-
Meijer, S.N.1
Ockenden, W.A.2
Sweetman, A.3
Breivik, K.4
Grimalt, J.O.5
Jones, K.C.6
-
76
-
-
33746767681
-
Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes
-
Morris, R.M., Sowell, S., Barofsky, D., Zinder, S., and Richardson, R. (2006) Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes. Environ Microbiol 8: 1499-1509.
-
(2006)
Environ Microbiol
, vol.8
, pp. 1499-1509
-
-
Morris, R.M.1
Sowell, S.2
Barofsky, D.3
Zinder, S.4
Richardson, R.5
-
77
-
-
33846123326
-
Comparative proteomics of Dehalococcoides spp. reveals strain-specific peptides associated with activity
-
Morris, R.M., Fung, J.M., Rahm, B.G., Zhang, S., Freedman, D.L., Zinder, S.H., and Richardson, R.E. (2007) Comparative proteomics of Dehalococcoides spp. reveals strain-specific peptides associated with activity. Appl Environ Microbiol 73: 320-326.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 320-326
-
-
Morris, R.M.1
Fung, J.M.2
Rahm, B.G.3
Zhang, S.4
Freedman, D.L.5
Zinder, S.H.6
Richardson, R.E.7
-
78
-
-
4143085164
-
Molecular Identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution
-
Muller, J.A., Rosner, B.M., von Abendroth, G., Meshulam-Simon, G., McCarty, P.L., and Spormann, A.M. (2004) Molecular Identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution. Appl Environ Microbiol 70: 4880-4888.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4880-4888
-
-
Muller, J.A.1
Rosner, B.M.2
Von Abendroth, G.3
Meshulam-Simon, G.4
McCarty, P.L.5
Spormann, A.M.6
-
79
-
-
0030997954
-
Uptake and biotransformation of trichloroethylene by hybrid poplars
-
Newman, L.A., Strand, S.E., Choe, N., Duffy, J., Ekuan, G., Ruszaj, M., et al. (1997) Uptake and biotransformation of trichloroethylene by hybrid poplars. Environ Sci Technol 31: 1062-1067.
-
(1997)
Environ Sci Technol
, vol.31
, pp. 1062-1067
-
-
Newman, L.A.1
Strand, S.E.2
Choe, N.3
Duffy, J.4
Ekuan, G.5
Ruszaj, M.6
-
80
-
-
0035166979
-
The comprehensive microbial resource
-
Peterson, J.D., Umayam, L.A., Dickinson, T., Hickey, E.K., and White, O. (2001) The comprehensive microbial resource. Nucleic Acids Res 29: 123-125.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 123-125
-
-
Peterson, J.D.1
Umayam, L.A.2
Dickinson, T.3
Hickey, E.K.4
White, O.5
-
81
-
-
77950668578
-
EnvDB, a database for describing the environmental distribution of prokaryotic taxa
-
Pignatelli, M., Moya, A., and Tamames, J. (2009) EnvDB, a database for describing the environmental distribution of prokaryotic taxa. Environ Microbiol Rep 1: 191-197.
-
(2009)
Environ Microbiol Rep
, vol.1
, pp. 191-197
-
-
Pignatelli, M.1
Moya, A.2
Tamames, J.3
-
82
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., and Glockner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glockner, F.O.7
-
83
-
-
33747346996
-
Temporal expression of respiratory genes in an enrichment culture containing Dehalococcoides ethenogenes
-
DOI 10.1128/AEM.00855-06
-
Rahm, B.G., Morris, R.M., and Richardson, R.E. (2006) Temporal expression of respiratory genes in an enrichment culture containing Dehalococcoides ethenogenes. Appl Environ Microbiol 72: 5486-5491. (Pubitemid 44242404)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.8
, pp. 5486-5491
-
-
Rahm, B.G.1
Morris, R.M.2
Richardson, R.E.3
-
84
-
-
0037098099
-
Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques
-
Richardson, R.E., Bhupathiraju, V.K., Song, D.L., Goulet, T.A., and Alvarez-Cohen, L. (2002) Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques. Environ Sci Technol 36: 2652-2662.
-
(2002)
Environ Sci Technol
, vol.36
, pp. 2652-2662
-
-
Richardson, R.E.1
Bhupathiraju, V.K.2
Song, D.L.3
Goulet, T.A.4
Alvarez-Cohen, L.5
-
85
-
-
33846088428
-
Ecological control analysis: Being(s) in control of mass flux and metabolite concentrations in anaerobic degradation processes
-
Röling, W.F.M., van Breukelen, B.M., Bruggeman, F.J., and Westerhoff, H.V. (2007) Ecological control analysis: being(s) in control of mass flux and metabolite concentrations in anaerobic degradation processes. Environ Microbiol 9: 500-511.
-
(2007)
Environ Microbiol
, vol.9
, pp. 500-511
-
-
Röling, W.F.M.1
Van Breukelen, B.M.2
Bruggeman, F.J.3
Westerhoff, H.V.4
-
86
-
-
58149143148
-
Concurrent ethene generation and growth of Dehalococcoides containing vinyl chloride reductive dehalogenase genes during an enhanced reductive dechlorination field demonstration
-
Scheutz, C., Durant, N.D., Dennis, P., Hansen, M.H., Jørgensen, T., Jakobsen, R., et al. (2008) Concurrent ethene generation and growth of Dehalococcoides containing vinyl chloride reductive dehalogenase genes during an enhanced reductive dechlorination field demonstration. Environ Sci Technol 42: 9302-9309.
-
(2008)
Environ Sci Technol
, vol.42
, pp. 9302-9309
-
-
Scheutz, C.1
Durant, N.D.2
Dennis, P.3
Hansen, M.H.4
Jørgensen, T.5
Jakobsen, R.6
-
87
-
-
19944426081
-
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
-
DOI 10.1126/science.1102226
-
Seshadri, R., Adrian, L., Fouts, D.E., Eisen, J.A., Phillippy, A.M., Methe, B.A., et al. (2005) Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science 307: 105-108. (Pubitemid 40093488)
-
(2005)
Science
, vol.307
, Issue.5706
, pp. 105-108
-
-
Seshadri, R.1
Adrian, L.2
Fouts, D.E.3
Eisen, J.A.4
Phillippy, A.M.5
Methe, B.A.6
Ward, N.L.7
Nelson, W.C.8
Deboy, R.T.9
Khouri, H.M.10
Kolonay, J.F.11
Dodson, R.J.12
Daugherty, S.C.13
Brinkac, L.M.14
Sullivan, S.A.15
Madupu, R.16
Nelson, K.E.17
Kang, K.H.18
Impraim, M.19
Tran, K.20
Robinson, J.M.21
Forberger, H.A.22
Fraser, C.M.23
Zinder, S.H.24
Heidelberg, J.F.25
more..
-
88
-
-
33947215475
-
CAMERA: A community resource for metagenomics
-
Seshadri, R., Kravitz, S.A., Smarr, L., Gilna, P., and Frazier, M. (2007) CAMERA: a community resource for metagenomics. PLoS Biol 5: e75.
-
(2007)
PLoS Biol
, vol.5
-
-
Seshadri, R.1
Kravitz, S.A.2
Smarr, L.3
Gilna, P.4
Frazier, M.5
-
90
-
-
33744783360
-
Biological enhancement of tetrachloroethene dissolution and associated microbial community changes
-
DOI 10.1021/es051493g
-
Sleep, B.E., Seepersad, D.J., Mo, K., Heidorn, C.M., Hrapovic, L., Morrill, P.L., et al. (2006) Biological enhancement of tetrachloroethene dissolution and associated microbial community changes. Environ Sci Technol 40:3623-3633. (Pubitemid 43830971)
-
(2006)
Environmental Science and Technology
, vol.40
, Issue.11
, pp. 3623-3633
-
-
Sleep, B.E.1
Seepersad, D.J.2
Mo, K.3
Heidorn, C.M.4
Hrapovic, L.5
Morrill, P.L.6
McMaster, M.L.7
Hood, E.D.8
Lebron, C.9
Lollar, B.S.10
Major, D.W.11
Edwards, E.A.12
-
91
-
-
9244251590
-
Anaerobic microbial dehalogenation
-
Smidt, H., and de Vos, W.M. (2004) Anaerobic microbial dehalogenation. Annu Rev Microbiol 58: 43-73.
-
(2004)
Annu Rev Microbiol
, vol.58
, pp. 43-73
-
-
Smidt, H.1
De Vos, W.M.2
-
92
-
-
1642330746
-
Development and testing of a DNA macroarray to assess nitrogenase (nifH) gene diversity
-
Steward, G.F., Jenkins, B.D., Ward, B.B., and Zehr, J.P. (2004) Development and testing of a DNA macroarray to assess nitrogenase (nifH) gene diversity. Appl Environ Microbiol 70: 1455-1465.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1455-1465
-
-
Steward, G.F.1
Jenkins, B.D.2
Ward, B.B.3
Zehr, J.P.4
-
93
-
-
33644954959
-
Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethene-respiring Dehalococcoides isolate
-
Sung, Y., Ritalahti, K.M., Apkarian, R.P., and Loffler, F.E. (2006) Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to- ethene-respiring Dehalococcoides isolate. Appl Environ Microbiol 72: 1980-1987.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 1980-1987
-
-
Sung, Y.1
Ritalahti, K.M.2
Apkarian, R.P.3
Loffler, F.E.4
-
94
-
-
0036077591
-
Phytoremediation: An ecological solution to organic chemical contamination
-
DOI 10.1016/S0925-8574(02)00026-5, PII S0925857402000265
-
Susarla, S., Medina, V.F., and McCutcheon, S.C. (2002) Phytoremediation: an ecological solution to organic chemical contamination. Ecol Eng 18: 647-658. (Pubitemid 34653240)
-
(2002)
Ecological Engineering
, vol.18
, Issue.5
, pp. 647-658
-
-
Susarla, S.1
Medina, V.F.2
McCutcheon, S.C.3
-
95
-
-
0037316061
-
Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment
-
DOI 10.1128/AEM.69.2.1159-1171.2003
-
Taroncher-Oldenburg, G., Griner, E.M., Francis, C.A., and Ward, B.B. (2003) Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment. Appl Environ Microbiol 69: 1159-1171. (Pubitemid 36204848)
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.2
, pp. 1159-1171
-
-
Taroncher-Oldenburg, G.1
Griner, E.M.2
Francis, C.A.3
Ward, B.B.4
-
97
-
-
67650482588
-
Tracking functional guilds: 'Dehalococcoides' spp. in European river basins contaminated with hexachlorobenzene
-
Taş, N., van Eekert, M.H.A., Schraa, G., Zhou, J., de Vos, W.M., and Smidt, H. (2009) Tracking functional guilds: 'Dehalococcoides' spp. in European river basins contaminated with hexachlorobenzene. Appl Environ Microbiol 75: 4696-4704.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4696-4704
-
-
Taş, N.1
Van Eekert, M.H.A.2
Schraa, G.3
Zhou, J.4
De Vos, W.M.5
Smidt, H.6
-
98
-
-
47749126600
-
The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the delta-proteobacteria
-
Thomas, S.H., Wagner, R.D., Arakaki, A.K., Skolnick, J., Kirby, J.R., Shimkets, L.J., et al. (2008) The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the delta-proteobacteria. PLoS ONE 3: e2103.
-
(2008)
PLoS ONE
, vol.3
-
-
Thomas, S.H.1
Wagner, R.D.2
Arakaki, A.K.3
Skolnick, J.4
Kirby, J.R.5
Shimkets, L.J.6
-
99
-
-
28844480510
-
Fungal diversity and use in decomposition of environmental pollutants
-
DOI 10.1080/10408410500304066
-
Tortella, G., Diez, M., and Durán, N. (2005) Fungal diversity and use in decomposition of environmental pollutants. Crit Rev Microbiol 31: 197-212. (Pubitemid 41770019)
-
(2005)
Critical Reviews in Microbiology
, vol.31
, Issue.4
, pp. 197-212
-
-
Tortella, G.R.1
Diez, M.C.2
Duran, N.3
-
100
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe, S.G., von Mering, C., Kobayashi, A., Salamov, A.A., Chen, K., Chang, H.W., et al. (2005) Comparative metagenomics of microbial communities. Science 308: 554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
Von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
-
103
-
-
77954164502
-
-
UNEP Chemicals U.N.E.P. (ed). New York, USA: United Nations Environment Programme
-
UNEP Chemicals (1999) In Guidelines for the identification of PCBs and materials Containing PCBs. U.N.E.P. (ed). New York, USA: United Nations Environment Programme, pp. 1-34.
-
(1999)
Guidelines for the Identification of PCBs and Materials Containing PCBs
, pp. 1-34
-
-
-
104
-
-
69249229699
-
Large-scale production of bacterial consortia for remediation of chlorinated solvent-contaminated groundwater
-
Vainberg, S., Condee, C., and Steffan, R. (2009) Large-scale production of bacterial consortia for remediation of chlorinated solvent-contaminated groundwater. J Ind Microbiol Biotechnol 36: 1189-1197.
-
(2009)
J Ind Microbiol Biotechnol
, vol.36
, pp. 1189-1197
-
-
Vainberg, S.1
Condee, C.2
Steffan, R.3
-
105
-
-
57549094171
-
Metagenomics approaches in systems microbiology
-
Vieites, J.M., Guazzaroni, M.E., Beloqui, A., Golyshin, P.N., and Ferrer, M. (2009) Metagenomics approaches in systems microbiology. FEMS Microbiol Rev 33: 236-255.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 236-255
-
-
Vieites, J.M.1
Guazzaroni, M.E.2
Beloqui, A.3
Golyshin, P.N.4
Ferrer, M.5
-
106
-
-
63049092891
-
TerraGenome: A consortium for the sequencing of a soil metagenome
-
Vogel, T.M., Simonet, P., Jansson, J.K., Hirsch, P.R., Tiedje, J.M., van Elsas, J.D., et al. (2009) TerraGenome: a consortium for the sequencing of a soil metagenome. Nat Rev Microbiol 7: 252-252.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 252-252
-
-
Vogel, T.M.1
Simonet, P.2
Jansson, J.K.3
Hirsch, P.R.4
Tiedje, J.M.5
Van Elsas, J.D.6
-
107
-
-
63849108021
-
Transcription analysis of genes encoding homologues of reductive dehalogenases in Dehalococcoides sp. strain CBDB1 using terminal restriction fragment length polymorphism and quantitative PCR
-
Wagner, A., Adrian, L., Kleinsteuber, S., Andreesen, J.R., and Lechner, U. (2009) Transcription analysis of genes encoding homologues of reductive dehalogenases in Dehalococcoides sp. strain CBDB1 using terminal restriction fragment length polymorphism and quantitative PCR. Appl Environ Microbiol 75: 1876-1884.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 1876-1884
-
-
Wagner, A.1
Adrian, L.2
Kleinsteuber, S.3
Andreesen, J.R.4
Lechner, U.5
-
108
-
-
63849227208
-
GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent
-
Wang, F., Zhou, H., Meng, J., Peng, X., Jiang, L., Sun, P., et al. (2009) GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent. Proc Natl Acad Sci USA 106: 4840-4845.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 4840-4845
-
-
Wang, F.1
Zhou, H.2
Meng, J.3
Peng, X.4
Jiang, L.5
Sun, P.6
-
109
-
-
3042825330
-
Ex planta phytoremediation of trichlorophenol and phenolic allelochemicals via an engineered secretory laccase
-
DOI 10.1038/nbt982
-
Wang, G.-D., Li, Q.-J., Luo, B., and Chen, X.-Y. (2004) Ex planta phytoremediation of trichlorophenol and phenolic allelochemicals via an engineered secretory laccase. Nat Biotechnol 22: 893-897. (Pubitemid 38886611)
-
(2004)
Nature Biotechnology
, vol.22
, Issue.7
, pp. 893-897
-
-
Wang, G.-D.1
Li, Q.-J.2
Luo, B.3
Chen, X.-Y.4
-
110
-
-
48349107135
-
Dioxin- And POP-contaminated sites - contemporary and future relevance and challenges
-
Weber, R., Gaus, C., Tysklind, M., Johnston, P., Forter, M., Hollert, H., et al. (2008) Dioxin- and POP-contaminated sites - contemporary and future relevance and challenges. Environ Sci Pollut Res Int 15: 363-393.
-
(2008)
Environ Sci Pollut Res Int
, vol.15
, pp. 363-393
-
-
Weber, R.1
Gaus, C.2
Tysklind, M.3
Johnston, P.4
Forter, M.5
Hollert, H.6
-
111
-
-
33646341543
-
Importance of implementation and residual risk analyses in sediment remediation
-
Wenning, R.J., Sorensen, M., and Magar, V.S. (2006) Importance of implementation and residual risk analyses in sediment remediation. Integr Environ Assess Manag 2: 59-65.
-
(2006)
Integr Environ Assess Manag
, vol.2
, pp. 59-65
-
-
Wenning, R.J.1
Sorensen, M.2
Magar, V.S.3
-
112
-
-
44949159958
-
Comparative genomics of 'Dehalococcoides ethenogenes' 195 and an enrichment culture containing unsequenced 'Dehalococcoides' strains
-
West, K.A., Johnson, D.R., Hu, P., DeSantis, T.Z., Brodie, E.L., Lee, P.K.H., et al. (2008) Comparative genomics of 'Dehalococcoides ethenogenes' 195 and an enrichment culture containing unsequenced 'Dehalococcoides' strains. Appl Environ Microbiol 74: 3533-3540.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 3533-3540
-
-
West, K.A.1
Johnson, D.R.2
Hu, P.3
DeSantis, T.Z.4
Brodie, E.L.5
Lee, P.K.H.6
-
114
-
-
0035656126
-
Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment
-
DOI 10.1128/AEM.67.12.5780-5790.2001
-
Wu, L., Thompson, D.K., Li, G., Hurt, R.A., Tiedje, J.M., and Zhou, J. (2001) Development and evaluation of functional gene arrays for detection of selected genes in the environment. Appl Environ Microbiol 67: 5780-5790. (Pubitemid 33641017)
-
(2001)
Applied and Environmental Microbiology
, vol.67
, Issue.12
, pp. 5780-5790
-
-
Wu, L.1
Thompson, D.K.2
Li, G.3
Hurt, R.A.4
Tiedje, J.M.5
Zhou, J.6
-
115
-
-
63849253144
-
Isolation of novel bacteria within the Chloroflexi capable of reductive dechlorination of 1,2,3-trichloropropane
-
Yan, J., Rash, B.A., Rainey, F.A., and Moe, W.M. (2009) Isolation of novel bacteria within the Chloroflexi capable of reductive dechlorination of 1,2,3-trichloropropane. Environ Microbiol 11: 833-843.
-
(2009)
Environ Microbiol
, vol.11
, pp. 833-843
-
-
Yan, J.1
Rash, B.A.2
Rainey, F.A.3
Moe, W.M.4
-
116
-
-
23744489083
-
Phylogenetic characterization of a polychlorinated-dioxin-dechlorinating microbial community by use of microcosm studies
-
DOI 10.1128/AEM.71.8.4325-4334.2005
-
Yoshida, N., Takahashi, N., and Hiraishi, A. (2005) Phylogenetic characterization of a polychlorinated-dioxin-dechlorinating microbial community by use of microcosm studies. Appl Environ Microbiol 71: 4325-4334. (Pubitemid 41129483)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.8
, pp. 4325-4334
-
-
Yoshida, N.1
Takahashi, N.2
Hiraishi, A.3
-
117
-
-
33747614838
-
Potential for phytoremediation of polychlorinated biphenyl-(PCB)- Contaminated soil
-
DOI 10.1080/15226510600846749, PII L9011657XP871J72
-
Zeeb, B.A., Amphlett, J.S., Rutter, A., and Reimer, K.J. (2006) Potential for phytoremediation of polychlorinated biphenyl-(PCB)-contaminated soil. Int J Phytorem 8: 199-221. (Pubitemid 44266913)
-
(2006)
International Journal of Phytoremediation
, vol.8
, Issue.3
, pp. 199-221
-
-
Zeeb, B.A.1
Amphlett, J.S.2
Rutter, A.3
Reimer, K.4
-
118
-
-
0037772204
-
Microarrays for bacterial detection and microbial community analysis
-
Zhou, J. (2003) Microarrays for bacterial detection and microbial community analysis. Curr Opin Microbiol 6: 288.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 288
-
-
Zhou, J.1
-
119
-
-
45549097485
-
Spatial scaling of functional gene diversity across various microbial taxa
-
DOI 10.1073/pnas.0709016105
-
Zhou, J., Kang, S., Schadt, C.W., and Garten, C.T. (2008) Spatial scaling of functional gene diversity across various microbial taxa. Proc Natl Acad Sci USA 105: 7768-7773. (Pubitemid 351872713)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.22
, pp. 7768-7773
-
-
Zhou, J.1
Kang, S.2
Schadt, C.W.3
Garten Jr., C.T.4
|