Reductive dechlorination of chloroethenes by Dehalococcoides-containing cultures enriched from a polychlorinated-dioxin-contaminated microcosm

ISME Journal

Volumn 1, Issue 6, 2007, Pages 471-479

  Futamata, Hiroyuki ^a   Yoshida, Naoko ^a   Kurogi, Takashi ^a   Kaiya, Shinichi ^a   Hiraishi, Akira ^a  

^a TOYOHASHI UNIVERSITY OF TECHNOLOGY   (Japan)

Author keywords

Dehalococcoides; Reductive dechlorination; Tetrachloroethene; Trichloroethene

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; BENZOFURAN DERIVATIVE; CHLORINE; CHLOROBENZENE; DIOXIN; FRESH WATER; HYDROGEN; PHTHALIDE; RIBOSOME DNA; RNA 16S; TRICHLOROBENZENE; UNCLASSIFIED DRUG; VINYL CHLORIDE;

ARTICLE; CHEMISTRY; CHLOROFLEXI; CLASSIFICATION; DNA DENATURATION; DNA FINGERPRINTING; DNA SEQUENCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLISM; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; OXIDATION REDUCTION REACTION; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; WATER POLLUTANT;

BACTERIAL PROTEINS; BENZOFURANS; CHLORINE; CHLOROBENZENES; CHLOROFLEXI; DIOXINS; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FRESH WATER; HYDROGEN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID DENATURATION; OXIDATION-REDUCTION; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; VINYL CHLORIDE; WATER POLLUTANTS;

BACTERIA (MICROORGANISMS); DEHALOCOCCOIDES;

EID: 34948844066     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2007.42     Document Type: Article

References (45)

1. Adrian L, Manz W, Szewzyk U, Gorisch H. (1998). Physiological characterization of a bacterial consortium reductively dechlorinating 1,2,3- and 1,2,4-trichlorobenzene. Appl Environ Microbiol 64: 496-503.
2. Adrian L, Szewzyk U, Wecke J, Görisch H. (2000). Bacterial dehalorespiration with chlorinated benzenes. Nature 408: 580-583.
3. Biebl H, Pfennig N. (1978). Growth yields of green sulfur bacteria in mixed cultures with sulfur and sulfate reducing bacteria. Arch Microbiol 117: 9-16.
4. Bunge M, Adrian L, Kraus A, Opel M, Lorenz WG, Andreesen JR et al. (2003). Reductive dehalogenation of chlorinated dioxins by an anaerobic bacterium. Nature 421: 357-360.
5. Cupples AM, Spormann AM, McCarty P. (2004). Comparative evaluation of chloroethenes dechlorination to ethene by Dehalococcoides-like microorganisms. Environ Sei Technol 38: 4768-4774.
6. Cupples AM, Spormann AM, McCarty PL. (2003). Growth of a Dehalococcoides-like microorganism on vinyl chloride and cis-dichloroethene as electron acceptors as determined by competitive PCR. Appl Environ Microbiol 69: 953-959.
7. Duhamel M, Mo K, Edwards EA. (2004). Characterization of a highly enriched Dehalococcoides-containing culture that grows on vinyl chloride and trichloroethylene. Appl Envrion Microbiol 70: 5538-5545.
8. Duhamel M, Wehr SD, Yu L, Rizvi H, Seepersad D, Dworatzek S et al. (2002). Comparison of anaerobic de chlorinating enrichment cultures maintained on tetrachloroethene, trichloroethene, cis-dichloroethene and vinyl chloride. Water Res 36: 4193-4202.
9. Ensley BD. (1991). Biochemical diversity of trichloroethylene metabolism. Annu Rev Microbiol 45: 283-299.
10. Futamata H, Hiraishi A. (2007). Biodiversity and ecophysiology of anaerobic dechlorinating bacteria: implications for bioremediation. Current Trend Microbiol (in press).
11. Futamata H, Nagano Y, Watanabe K, Hiraishi A. (2005). Unique kinetic properties of phenol-degrading Variovorax strains responsible for efficient trichloroethylene degradation in a chemostat enrichment culture. Appl Envrion Microbiol 71: 904-911.
12. He J, Ritalahti KM, Aiello MR, Löffler FE. (2003). Complete detoxification of vinyl chloride by an anaerobic enrichment culture and identification of the reductively dechlorinating population as Dehalococcoides species. Appl Environ Microbiol 69: 996-1003.
13. He J, Sung Y, Krajmalnik-Brown R, Ritalahti KM, Löffler FK. (2005). Isolation and characterization of Dehalococcoides sp strain FL2, a trichloroethene (TCE)- and 1,2-dichloroethene-respiring anaerobe. Environ Microbiol 7: 1442-1450.
14. Hendrickson ER, Payne JA, Young RM, Starr MG, Perry MP, Fahnestock S et al. (2002). Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout north America and Europe. Appl Envrion Microbiol 68: 485-495.
15. Hiraishi A, Sakamaki N, Miyakoda H, Maruyama T, Kato K, Futamata H. (2005a). Estimation of 'Dehalococcoides' populations in lake sediment contaminated with low levels of polychlorinated dioxins. Microbes Environ 20: 216-226.
16. Hiraishi A, Kaiya S, Miyakoda H, Futamata H. (2005b). Biotransformation of polychlorinated dioxins and microbial community dynamics in sediment microcosms at different contamination levels. Microbes Environ 20: 227-242.
17. Hiraishi A, Yonemitsu Y, Matsushita M, Shin YK, Kuraishi H, Kawahara K. (2002). Characterization of Porphyrobacter sanguineus sp. nov., an aerobic bacteriochlorophyll-containing bacterium capable of degrading biphenyl and dibenzofuran. Arch Microbiol 178: 45-52.
18. Holliger C, Hahn D, Harmsen H, Ludwig W, Schumacher W, Tindall B et al. (1998). Dehalobacter restricus gen. nov. and sp. nov., a strictly anaerobic bacterium that reductively dechlorinates tetra- and trichloroethene in an anaerobic respiration. Arch Microbiol 169: 313-321.
19. Holmes VF, He J, Lee PKH, Alvarez-Cohen L. (2006). Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes. Appl Environ Microbiol 72: 5877-5883.
20. Hölscher T, Gorisch H, Adrian L. (2003). Reductive dehalogenation of chlorobenzene congeners in cell extracts of Dehalococcoides sp. strain CBDB1. Appl Environ Microbiol 69: 2999-3001.
21. Hölscher T, Krajmalnik-Brown R, Ritalahti KM, von Wintzingerode F, Görisch H, Löffler FE et al. (2004). Multiple nonidentical reductive-dehalogenase-homologous genes are common in Dehalococcoides. Appl Environ Microbiol 70: 5290-5297.
22. Krajmalnik-Brown R, Hölscher T, Thomson IN, Saunders FM, Ritalahti KM, Löffler FE. (2004). Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1. Appl Environ Microbiol 70: 6347-6351.
23. Kube M, Beck A, Zinder SH, Kuhl H, Reinhardt R, Adrian L. (2005). Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1. Nat Biotechnol 23: 1269-1273.
24. Lee PKH, Johnson DR, Holmes VF, He J, Alvarez-Cohen L. (2006). Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp. Appl Environ Microbiol 72: 6161-6168.
25. Löffler FE, Sanford RA, Tiedje JM. (1996). Initial characterization of a reductive dehalogenase from Desulfitobacterium chlororespirans Co23. Appl Environ Microbiol 62: 3809-3818.
26. Mackay D, Shiu WY. (1981). A critical review of Henry's law constants for chemicals of environmental interest. J Phys Chem Ref Data 10: 1175-1199.
27. Magnuson JK, Romine MF, Burris DR, Kingsley MT. (2000). Trichloroethene reductive dehalogenase from Dehalococcoides ethenogenes: sequence of tceA and substrate range characterization. Appl Environ Microbiol 66: 5141-5147.
28. Magnuson JK, Stern RV, Gossett JM, Zinder SH, Burris DR. (1998). Reductive dechlorination of tetrachloroethene to ethene by a two-component enzyme pathway. Appl Environ Microbiol 64: 1270-1275.
29. Major DW, McMaster ML, Cox EE. (2002). Field demonstration of successful bioaugmentation to achieve dechlorination of tetrachloroethene to ethene. Envrion Sei Technol 36: 5106-5116.
30. Maymo-Gatell X, Chien YT, Gossett JM, Zinder SH. (1997). Isolation of a bacterium that reductively dechlorinates trichloroethene to ethene. Science 276: 1568-1571.
31. McCarty PL. (1997). Breathing with chlorinated solvents. Science 276: 1521-1522.
32. Müller JA, Rosner BM, von Abendroth G, MeshulamSimon G, McCarty PL, Spormann AM. (2004). Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution. Appl Environ Microbiol 70: 4880-4888.
33. Muyzer G, de Waal EC, Uitterlinden AG. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding 16S rRNA. Appl Envrion Microbiol 59: 695-700.
34. Ritalahti KM, Amos BK, Sung Y, Wu O, Koenigsberg SS, Löffler FE. (2006). Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains. Appl Environ Microbiol 72: 2765-2774.
35. Sambrook J, Fritsch EF, Maniatis T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory: Cold Spring Harbor, New York, USA.
36. Semprini L. (1997). Strategies for the aerobic co-metabolism of chlorinated solvents. Curr Opin Biotechnol 8: 296-308.
37. Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA et al. (2005). Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science 307: 105-108.
38. Smidt H, de Vos WM. (2004). Anaerobic microbial dehalogenation. Annu Rev Microbiol 58: 43-73.
39. Sprott GD, Koval SF, Schnaitman CA. (1994). Cell fractionation. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds). Methods for General and Molecular Bacteriology. American Society for Microbiology: Washington, DC, pp 71-103.
40. Sung Y, Ritalahti KM, Apkarian RP, Löffler F. (2006). Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethene-respiring Dehalococcoides isolate. Appl Environ Microbiol 72: 1980-1987.
41. Suyama A, Iwakiri R, Kai K, Tokunaga T, Sera N, Furukawa K. (2001). Isolation and characterization of Desulfitobacterium sp. strain Y51 capable of efficient dehalogenation of tetrachloroethene and polychloroethanes. Biosci Biotechnol Biochem 65: 1474-1481.
42. Suyama A, Yamashita M, Yoshino S, Furukawa K. (2002). Molecular characterization of the PceA reductive dehalogenase of Desulfitobacterium sp. strain Y51. J Bacteriol 184: 3419-3425.
43. Thompson JD, Higgins DG, Gibson TJ. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
44. Yoshida N, Takahashi N, Hiraishi A. (2005). Phylogenetic characterization of a polychlorinated-dioxindechlorinating microbial community by use of microcosm studies. Appl Envrion Microbiol 71: 4325-4334.
45. Zehnder AJB, Wuhrmann K. (1976). Titanium (III) citrate as a nontoxic oxidation-reduction buffering system for the culture of obligate anaerobes. Science 194: 1165-1166.