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Volumn 73, Issue 8, 2007, Pages 2744-2747

Unusual codon bias in vinyl chloride reductase genes of Dehalococcoides species

Author keywords

[No Author keywords available]

Indexed keywords

DEHALOGENATION; GROUNDWATER POLLUTION; MICROORGANISMS; NUCLEOTIDES; TRICHLOROETHYLENE;

EID: 34247600158     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02768-06     Document Type: Article
Times cited : (26)

References (23)
  • 1
    • 55449123112 scopus 로고    scopus 로고
    • Azad, R. K., and J. G. Lawrence. 2005. Use of artificial genomes in assessing methods for atypical gene detection. PLoS Comput. Biol. 1:e56.
    • Azad, R. K., and J. G. Lawrence. 2005. Use of artificial genomes in assessing methods for atypical gene detection. PLoS Comput. Biol. 1:e56.
  • 2
    • 33646228611 scopus 로고    scopus 로고
    • Bailly-Bechet, M., A. Danchin, M. Iqbal, M. Marsili, and M. Vergassola. 2006. Codon usage domains over bacterial chromosomes. PLoS Comput. Biol. 2:e37.
    • Bailly-Bechet, M., A. Danchin, M. Iqbal, M. Marsili, and M. Vergassola. 2006. Codon usage domains over bacterial chromosomes. PLoS Comput. Biol. 2:e37.
  • 4
    • 20444406724 scopus 로고    scopus 로고
    • The ade4 package. 1. One-table methods
    • Chessel, D., A. B. Dufour, and J. Thioulouse. 2004. The ade4 package. 1. One-table methods. R News 4:5-10. http://CRAN.R-project.org/ doc/Rnews/.
    • (2004) R News , vol.4 , pp. 5-10
    • Chessel, D.1    Dufour, A.B.2    Thioulouse, J.3
  • 6
    • 0036595304 scopus 로고    scopus 로고
    • Horizontal gene transfer in microbial genome evolution
    • Jain, R., M. C. Rivera, J. E. Moore, and J. Lake. 2002. Horizontal gene transfer in microbial genome evolution. Theor. Popul. Biol. 61:489-495.
    • (2002) Theor. Popul. Biol , vol.61 , pp. 489-495
    • Jain, R.1    Rivera, M.C.2    Moore, J.E.3    Lake, J.4
  • 7
    • 0031720281 scopus 로고    scopus 로고
    • Codon usages in different gene classes of the Escherichia coli genome
    • Karlin, S., J. Mrazek, and A. M. Campbell. 1998. Codon usages in different gene classes of the Escherichia coli genome. Mol. Microbiol. 29:1341-1355.
    • (1998) Mol. Microbiol , vol.29 , pp. 1341-1355
    • Karlin, S.1    Mrazek, J.2    Campbell, A.M.3
  • 9
    • 27144500225 scopus 로고    scopus 로고
    • Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1
    • Kube, M., A. Beck, S. H. Zinder, H. Kuhl, R. Reinhardt, and L. Adrian. 2005. Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1. Nat. Biotechnol. 23:1269-1273.
    • (2005) Nat. Biotechnol , vol.23 , pp. 1269-1273
    • Kube, M.1    Beck, A.2    Zinder, S.H.3    Kuhl, H.4    Reinhardt, R.5    Adrian, L.6
  • 10
    • 0032482924 scopus 로고    scopus 로고
    • Molecular archaeology of the Escherichia coli genomes
    • Lawrence, J. G., and H. Ochman. 1998. Molecular archaeology of the Escherichia coli genomes. Proc. Natl. Acad. Sci. USA 95:9413-9417.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 9413-9417
    • Lawrence, J.G.1    Ochman, H.2
  • 11
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T., and S. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.1    Eddy, S.2
  • 12
    • 0034466646 scopus 로고    scopus 로고
    • Trichloroethene reductive dehalogenase from Dehalococcoides ethenogenes: Sequence of tceA and substrate range characterization
    • Magnuson, J. K., M. F. Romine, D. R. Burris, and M. T. Kingsley. 2000. Trichloroethene reductive dehalogenase from Dehalococcoides ethenogenes: sequence of tceA and substrate range characterization. Appl. Environ. Microbiol. 66:5141-5147.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 5141-5147
    • Magnuson, J.K.1    Romine, M.F.2    Burris, D.R.3    Kingsley, M.T.4
  • 13
    • 0031980176 scopus 로고    scopus 로고
    • Reductive dechlorination of tetrachloroethene to ethene by a two-component enzyme pathway
    • Magnuson, J. K., R. V. Stern, J. M. Gossett, S. H. Zinder, and D. R. Burris. 1998. Reductive dechlorination of tetrachloroethene to ethene by a two-component enzyme pathway. Appl. Environ. Microbiol. 64:1270-1275.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 1270-1275
    • Magnuson, J.K.1    Stern, R.V.2    Gossett, J.M.3    Zinder, S.H.4    Burris, D.R.5
  • 14
    • 0030943524 scopus 로고    scopus 로고
    • Breathing with chlorinated solvents
    • McCarty, P. L. 1997. Breathing with chlorinated solvents. Science 276:1521-1522.
    • (1997) Science , vol.276 , pp. 1521-1522
    • McCarty, P.L.1
  • 15
    • 33746767681 scopus 로고    scopus 로고
    • Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes
    • Morris, R. M., S. Sowell, D. Barofsky, S. Zinder, and R. Richardson. 2006. Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes. Environ. Microbiol. 8:1499-1509.
    • (2006) Environ. Microbiol , vol.8 , pp. 1499-1509
    • Morris, R.M.1    Sowell, S.2    Barofsky, D.3    Zinder, S.4    Richardson, R.5
  • 16
    • 4143085164 scopus 로고    scopus 로고
    • Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution
    • Muller, J. A., B. M. Rosner, G. Von Abendroth, G. Meshulam-Simon, P. L. McCarty, and A. M. Spormann. 2004. Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution. Appl. Environ. Microbiol. 70:4880-4888.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 4880-4888
    • Muller, J.A.1    Rosner, B.M.2    Von Abendroth, G.3    Meshulam-Simon, G.4    McCarty, P.L.5    Spormann, A.M.6
  • 17
    • 28444445926 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • R Development Core Team, Technical report. R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team. 2005. R: a language and environment for statistical computing. Technical report. R Foundation for Statistical Computing, Vienna, Austria.
    • (2005)
  • 18
    • 20444411823 scopus 로고    scopus 로고
    • Indications for acquisition of reductive dehalogenase genes through horizontal gene transfer by Dehalococcoides ethenogenes strain 195
    • Regeard, C., J. Maillard, C. Dufraigne, P. Deschavanne, and C. Holliger. 2005. Indications for acquisition of reductive dehalogenase genes through horizontal gene transfer by Dehalococcoides ethenogenes strain 195. Appl. Environ. Microbiol. 71:2955-2961.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 2955-2961
    • Regeard, C.1    Maillard, J.2    Dufraigne, C.3    Deschavanne, P.4    Holliger, C.5
  • 19
    • 0346729773 scopus 로고    scopus 로고
    • Development of degenerate and specific PCR primers for the detection and isolation of known and putative chloroethene reductive dehalogenase genes
    • Regeard, C., J. Maillard, and C. Holliger. 2004. Development of degenerate and specific PCR primers for the detection and isolation of known and putative chloroethene reductive dehalogenase genes. J. Microbiol. Methods 56:107-118.
    • (2004) J. Microbiol. Methods , vol.56 , pp. 107-118
    • Regeard, C.1    Maillard, J.2    Holliger, C.3
  • 21
    • 0023046874 scopus 로고
    • Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
    • Sharp, P. M., T. M. Tuohy, and K. R. Mosurski. 1986. Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res. 14:5125-5143.
    • (1986) Nucleic Acids Res , vol.14 , pp. 5125-5143
    • Sharp, P.M.1    Tuohy, T.M.2    Mosurski, K.R.3
  • 22
    • 9244251590 scopus 로고    scopus 로고
    • Anaerobic microbial dehalogenation
    • Smidt, H., and W. de Vos. 2004. Anaerobic microbial dehalogenation. Annu. Rev. Microbiol. 58:43-73.
    • (2004) Annu. Rev. Microbiol , vol.58 , pp. 43-73
    • Smidt, H.1    de Vos, W.2
  • 23
    • 29144480680 scopus 로고    scopus 로고
    • Multiple reductive-dehalogenase-homologous genes are simultaneously transcribed during dechlorination by Dehalococcoides- containing cultures
    • Waller, A. S., R. Krajmalnik-Brown, F. E. Loffler, and E. A. Edwards. 2005. Multiple reductive-dehalogenase-homologous genes are simultaneously transcribed during dechlorination by Dehalococcoides- containing cultures. Appl. Environ. Microbiol. 71:8257-8264.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 8257-8264
    • Waller, A.S.1    Krajmalnik-Brown, R.2    Loffler, F.E.3    Edwards, E.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.