Mechanical properties of DNA biofilms adsorbed on microcantilevers in label-free biodetections

Biomaterials

Volumn 31, Issue 25, 2010, Pages 6659-6666

  Zhang, Neng Hui ^a   Chen, Jian Zhong ^a   Li, Jing Jing ^a   Tan, Zou Qing ^a  

^a SHANGHAI UNIVERSITY   (China)

Author keywords

Adsorption; Biofilm; Biosensor; DNA; Mechanical properties; Surface energy

Indexed keywords

ANALYTICAL MODEL; BENDING BEAM; BIO-DETECTIONS; BIODETECTION; BUFFER SALTS; CONFORMATIONAL ENTROPY; DOUBLE-STRANDED DNA (DS-DNA); ELECTROSTATIC REPULSION; ENERGY CONSERVATION LAW; EXPERIMENTAL DATA; HYDRATION FORCE; LABEL FREE; MESOSCOPICS; MICRO-CANTILEVERS; NANOSCOPIC PROPERTIES; NEAR-SURFACE; PACKAGING DENSITY; PACKING DENSITY; PURE BENDING; STONEY'S FORMULA; SURFACE ENERGIES; SURFACE ENERGY;

ADSORPTION; ATOMIC FORCE MICROSCOPY; BEAMS AND GIRDERS; BIOFILMS; BIOFILTERS; BIOSENSORS; CHEMICAL SENSORS; COMPOSITE MICROMECHANICS; CONTINUUM MECHANICS; CURVE FITTING; DNA; ELASTIC MODULI; ELASTICITY; GENES; INTERFACIAL ENERGY; LIQUID CRYSTALS; MATHEMATICAL MODELS; SURFACE CHEMISTRY; SURFACE TENSION;

MECHANICAL PROPERTIES;

DOUBLE STRANDED DNA; DNA;

ADHESION; ARTICLE; BIOFILM; BIOMECHANICS; BIOSENSOR; BIOTECHNOLOGY; DNA BIOFILM; ENTROPY; FORCE; HYDRATION; HYDRATION FORCE; MICROCANTILEVER; PRIORITY JOURNAL; STATIC ELECTRICITY; THEORY; YOUNG MODULUS; ADSORPTION; CHEMISTRY; GENETIC PROCEDURES; MECHANICS; PROCEDURES; THERMODYNAMICS;

ADSORPTION; BIOSENSING TECHNIQUES; DNA; ELASTIC MODULUS; MECHANICAL PHENOMENA; THERMODYNAMICS;

EID: 77953960941     PISSN: 01429612     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biomaterials.2010.05.028     Document Type: Article

References (45)

1. Fritz J., Ballar M.K., Lang H.P., Rothuizen H., Vettiger P., Meyer E., et al. Translating biomolecular recognition into nanomechanics. Science 2000, 288:316-318.
2. Wu G.H., Ji H.F., Hansen K.M., Thundat T., Datar R., Cote R., et al. Origin of nanomechanical cantilever motion generated from biomolecular interactions. Proc Natl Acad Sci U S A 2001, 98:1560-1564.
3. Hagan M.F., Majumdar A., Chakraborty A.K. Nanomechanical forces generated by surface grafted DNA. J Phys Chem B 2002, 106:10163-10173.
4. Liu F., Zhang Y., Ou-Yang Z.C. Flexoelectric origin of nanomechanic deflection in DNA-microcantilever system. Biosens Bioelectron 2003, 18:655-660.
5. Alvarez M., Carrascosa L.G., Moreno M., Calle A., Zaballos A.L., Lechuga M., et al. Nanomechanics of the formation of DNA self-assembled monolayers and hybridization on microcantilevers. Langmuir 2004, 20:9663-9668.
6. Hansen K.M., Thundat T. Microcantilever biosensors. Methods 2005, 37:57-64.
7. Stachowiak J.C., Yue M., Castelino K., Chakraborty A., Majumdar A. Chemomechanics of surface stresses induced by DNA hybridization. Langmuir 2006, 22:263-268.
8. Zhang N.H., Shan J.Y., Xing J.J. Piezoelectric properties of single-strand DNA molecular brush biolayers. Acta Mech Sol Sin 2007, 20:206-210.
9. Zhang N.H., Shan J.Y. An energy model for nanomechanical deflection of cantilever-DNA chip. J Mech Phys Soilds 2008, 56:2328-2337.
10. Finot E., Passian A., Thundat T. Measurement of mechanical properties of cantilever shaped materials. Sensors 2008, 8:3497-3541.
11. Fritz J. Cantilever biosensors. Analyst 2008, 133:855-863.
12. Zhang N.H., Chen J.Z. Mechanical properties of double-stranded DNA biolayers immobilized on microcantilever under axial compression. J Biomech 2009, 42:1483-1487.
13. Zhang N.H., Chen J.Z., Wan S.X. A model for the hybridization exothermic effect in label-free biodetections by a nanomechanical cantilever-DNA chip. Int J Thermophys 2009, 30:648-660.
14. Stevenson K.A., Mehta A., Sachenko P., Hansen K.M., Thundat T. Nanomechanical effect of enzymatic manipulation of DNA on microcantilever surfaces. Langmuir 2002, 18:8732-8736.
15. Castelino K., Kannan B., Majumdar A. Characterization of grafting density and binding efficiency of DNA and proteins on gold surfaces. Langmuir 2005, 21:1956-1961.
16. Mertens J., Rogero C., Calleja M., Ramos D., Martin-Gago J.A., Briones C., et al. Label-free detection of DNA hybridization based on hydration-induced tension in nucleic acid films. Nature Nanotech 2008, 3:301-307.
17. Yue M., Lin H., Dedrick D.E., Satyanarayana S., Majumdar A., Besekar A.S., et al. A 2-D microcantilever array for multiplexed biomolecular analysis. J Microelectromech Syst 2004, 13:290-299.
18. Jeon S., Jung N., Thundat T. Nanomechanics of a self-assembled monolayer on microcantilever sensors measured by a multiple-point deflection technique. Sens Actuators B 2007, 122:365-368.
19. McKendry R., Zhang J.Y., Arntz Y., Strunz T., Hegner M., Lang H.P., et al. Multiple label-free biodetection and quantitative DNA-binding assays on a nanomechanical cantilever array. Proc Natl Acad Sci U S A 2002, 99:9783-9788.
20. Carrascosa L.G., Moreno M., Alvarez M. Nanomechanical biosensors: a new sensing tool. Trends Anal Chem 2006, 25:196-206.
21. Strey H.H., Parsegian V.A., Podgornik R. Equation of state for DNA liquid crystals: fluctuation enhanced electrostatic double layer repulsion. Phys Rev Lett 1997, 78:895-898.
22. Strey H.H., Parsegian V.A., Podgornik R. Equation of state for polymer liquid crystals: theory and experiment. Phys Rev E 1999, 59:999-1008.
23. Marie R., Jensenius H., Thaysen J., Christensen C.B., Boisen A. Adsorption kinetics and mechanical properties of thiol-modified DNA-oligos on gold investigated by microcantilever sensors. Ultramicroscopy 2002, 91:29-36.
24. Bustamante C., Bryant Z., Smith S.B. Ten years of tension: single-molecule DNA mechanics. Nature 2003, 421:423-427.
25. de Gennes P.G. Concepts in polymer physics 1979, Cornell University Press, New York.
26. Decuzzi P., Ferrari M. Modulating cellular adhesion through nanotopography. Biomaterials 2010, 31:173-179.
27. Suda H., Sasaki Y.C., Oishi N., Hiraoka N., Sutoh K. Elasticity of mutant myosin subfragment-1 arranged on a functional silver surface. Biochem Biophys Res Commun 1999, 261:276-282.
28. 3-terminated alkanethiol monolayers. Langmuir 2005, 21:3926-3932.
29. Kindt J., Tzlil S., Ben-Shaul A., Gelbart W. DNA packaging and ejection forces in bacteriophage. Proc Natl Acad Sci U S A 2001, 98:13671-13674.
30. Klug W.S., Ortiz M. A director-field model of DNA packaging in viral capsids. J Mech Phys Solids 2003, 51:1815-1847.
31. Grayson P., Evilevitch A., Inamdar M.M., Purohit P.K., Gelbart W.M., Knobler C.M., et al. The effect of genome length on ejection forces in bacteriophage lambda. Virology 2006, 348:430-436.
32. Kim H.I., Kushmerick J.G., Houston J.E., Bunker B.C. Viscous " interphase" water adjacent to oligo (ethyleneglycol)-terminated monolayers. Langmuir 2003, 19:9271-9275.
33. Tan Z.Q., Li J.J., Zhang N.H. An analytical model for nanomechanical behavior of microcantilever-DNA chip. Second international conference on smart materials and nanotechnology in engineering 2009, SPIE, Bellingham, 74933X-74933X-6. J.S. Leng, A.K. Asundi, W. Ecke (Eds.).
34. Rau D.C., Lee B., Parsegian V.A. Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices. Proc Natl Acad Sci U S A 1984, 81:2621-2625.
35. Podgornik R., Parsegian V.A. Molecular fluctuations in the packing of polymeric liquid crystals. Macromolecules 1990, 23:2265-2269.
36. Podgornik R., Rau D.C., Parsegian V.A. Parametrization of direct and soft steric-undulatory forces between DNA double helical polyelectrolytes in solutions of several different anions and cations. Biophys J 1994, 66:962-971.
37. Leiken S., Parsegian V.A., Rau D.C., Rand R.P. Hydration forces. Annu Rev Phys Chem 1993, 44:369-395.
38. Zhang N.H., Xing J.J. An alternative model for elastic bending deformation of multilayered beams. J Appl Phys 2006, 100:103519.
39. Zhang N.H. Thermoelastic stresses in multilayered beams. Thin Solid Films 2007, 515:8402-8406.
40. Zhang N.H., Chen J.Z. An alternative two-variable model for bending problems of multilayered beams. ASME J Appl Mech 2008, 75:044503.
41. Zhang N.H., Chen J.Z. Elastic bending analysis of bilayered beams by an alternative two-variable method. Euro J Mech A/Solids 2009, 28:284-288.
42. Zhang N.H., Chen J.Z. An alternative model for elastic thermal stresses in two materials joined by a graded layer. Compos B Eng 2010, 41:375-379.
43. Liu B., Zhang L.X., Gao H.J. Poisson ratio can play a crucial role in mechanical properties of biocomposites. Mech Mater 2006, 38:1128-1142.
44. Pettitt B.M., Vainrub A., Wong K.-Y. DNA saline solutions near surfaces: a few ideas towards design parameters of DNA arrays. Ionic soft matter: modern trends in theory and applications 2005, 381-393. Springer, Netherlands. D. Henderson, M. Holovko, A. Trokhymchuk (Eds.).
45. Jayasuriya A.C., Ghosh S., Scheinbeim J.I., Lubkin V., Bennett G., Kramer P. A study of piezoelectric and mechanical anisotropies of the human cornea. Biosens Bioelectron 2003, 18:381-387.