Mechanical properties of double-stranded DNA biolayers immobilized on microcantilever under axial compression

Journal of Biomechanics

Volumn 42, Issue 10, 2009, Pages 1483-1487

  Zhang, Neng Hui ^a   Chen, Jian Zhong ^a  

^a SHANGHAI UNIVERSITY   (China)

Author keywords

Axial compression; Double stranded DNA; Mechanical property; Microcantilever; Young's modulus

Indexed keywords

ANALYTICAL RELATIONS; BIO-DETECTIONS; BIOLAYERS; BUFFER SALTS; CONFORMATIONAL FLUCTUATIONS; DOUBLE-STRANDED DNA; DOUBLE-STRANDED DNA (DS-DNA); ELECTROSTATIC DOUBLE LAYER; ENERGY CONSERVATION LAW; EQUATION OF STATE; GEOMETRICAL PROPERTY; HYDRATION FORCE; LABEL FREE; LOAD-DEFORMATION CURVES; MESOSCOPIC; MICRO-CANTILEVERS; MICROCANTILEVER; NANOMECHANICAL DEFLECTION; PACKING DENSITY; PHYSICAL REVIEW; POLYMER LIQUID CRYSTALS; SCREENED ELECTROSTATIC REPULSION; SINGLE-STRANDED DNA (SS-DNA); SOLID SUBSTRATES; YOUNG'S MODULUS;

ATOMIC FORCE MICROSCOPY; AXIAL COMPRESSION; CHEMICAL SENSORS; COMPOSITE MICROMECHANICS; CONTINUUM MECHANICS; CRYSTALS; DNA; ELASTIC MODULI; ELASTICITY; ELECTROSTATICS; ENERGY CONSERVATION; EQUATIONS OF STATE OF LIQUIDS; GENES; LAWS AND LEGISLATION; LIGHT SOURCES; LIQUID CRYSTALS; MECHANICAL PROPERTIES; NUCLEIC ACIDS;

LIQUID CRYSTAL POLYMERS;

BALANCED SALT SOLUTION; DOUBLE STRANDED DNA; DOUBLE STRANDED DNA BIOLAYER; SINGLE STRANDED DNA; UNCLASSIFIED DRUG;

ARTICLE; BIOMECHANICS; COMPRESSION; CONTROLLED STUDY; CORNEA CELL; DNA CONFORMATION; DNA CROSS LINKING; DNA MICROARRAY; ELECTROSTATIC PRECIPITATION; LIQUID CRYSTAL; MICROCHIP ANALYSIS; MICROFLUIDIC ANALYSIS; NANOBIOTECHNOLOGY; PRIORITY JOURNAL; REHYDRATION; SURFACE PLASMON RESONANCE; YOUNG MODULUS;

BIOMECHANICS; BIOPHYSICAL PHENOMENA; BIOSENSING TECHNIQUES; COMPRESSIVE STRENGTH; DNA; ELASTICITY; MODELS, BIOLOGICAL; STATIC ELECTRICITY; THERMODYNAMICS;

EID: 67649482316     PISSN: 00219290     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiomech.2009.03.050     Document Type: Article

References (36)

1. Alvarez M., Carrascosa L.G., Moreno M., Calle A., Zaballos A., Lechuga L.M., Martinez AC., and Tamayo J. Nanomechanics of the formation of DNA self-assembled monolayers and hybridization on microcantilevers. Langmuir 20 (2004) 9663-9668
2. Bustamante C., Bryant Z., and Smith S.B. Ten years of tension: single-molecule DNA mechanics. Nature 421 (2003) 423-427
3. Carrascosa L.G., Moreno M., and Alvarez M. Nanomechanical biosensors: a new sensing tool. Trends in Analytical Chemistry 25 (2006) 196-206
4. Castelino K., Kannan B., and Majumdar A. Characterization of grafting density and binding efficiency of DNA and proteins on gold surfaces. Langmuir 21 (2005) 1956-1961
5. de Gennes P.G. Concepts in Polymer Physics (1979), Cornell University Press, Ithaca, NY
6. Finot E., Passian A., and Thundat T. Measurement of mechanical properties of cantilever shaped materials. Sensors 8 (2008) 3497-3541
7. Fritz J. Cantilever biosensors. Analyst 133 (2008) 855-863
8. Fritz J., Ballar M.K., Lang H.P., Rothuizen H., Vettiger P., Meyer E., Guntherodt H.-J., Gerber Ch., and Gimzewski J.K. Translating biomolecular recognition into nanomechanics. Science 288 (2000) 316-318
9. Grayson P., Evilevitch A., Inamdar M.M., Purohit P.K., Gelbart W.M., Knobler C.M., and Phillips R. The effect of genome length on ejection forces in bacteriophage lambda. Virology 348 (2006) 430-436
10. Hagan M.F., Majumdar A., and Chakraborty A.K. Nanomechanical forces generated by surface grafted DNA. Journal of Physical Chemistry B 106 (2002) 10163-10173
11. Hansen K.M., and Thundat T. Microcantilever biosensors. Methods 37 (2005) 57-64
12. Jayasuriya A.C., Ghosh S., Scheinbeim J.I., Lubkin V., Bennett G., and Kramer P. A study of piezoelectric and mechanical anisotropies of the human cornea. Biosensors and Bioelectronics 18 (2003) 381-387
13. Kindt J., Tzlil S., Ben-Shaul A., and Gelbart W. DNA packaging and ejection forces in bacteriophage. Proceedings of the National Academy of Sciences USA 98 (2001) 13671-13674
14. Klug W.S., and Ortiz M. A director-field model of DNA packaging in viral capsids. Journal of the Mechanics and Physics of Solids 51 (2003) 1815-1847
15. Leiken S., Parsegian V.A., Rau D.C., and Rand R.P. Hydration forces. Annual Review of Physical Chemistry 44 (1993) 369-395
16. Liu B., Zhang L.X., and Gao H.J. Poisson ratio can play a crucial role in mechanical properties of biocomposites. Mechanics of Materials 38 (2006) 1128-1142
17. Liu F., Zhang Y., and Ou-Yang Z.C. Flexoelectric origin of nanomechanic deflection in DNA-microcantilever system. Biosensors and Bioelectronics 18 (2003) 655-660
18. Marie R., Jensenius H., Thaysen J., Christensen C.B., and Boisen A. Adsorption kinetics and mechanical properties of thiol-modified DNA-oligos on gold investigated by microcantilever sensors. Ultramicroscopy 91 (2002) 29-36
19. McKendry R., Zhang J.Y., Arntz Y., Strunz T., Hegner M., Lang H.P., Baller M.K., Certa U., Meyer E., Guntherodt H.J., and Gerber Ch. Multiple label-free biodetection and quantitative DNA-binding assays on a nanomechanical cantilever array. Proceedings of the National Academy of Sciences USA 99 (2002) 9783-9788
20. Mertens J., Rogero C., Calleja M., Ramos D., Martin-Gago J.A., Briones C., and Tamayo J. Label-free detection of DNA hybridization based on hydration-induced tension in nucleic acid films. Nature Nanotechnology 3 (2008) 301-307
21. Podgornik R., and Parsegian V.A. Molecular fluctuations in the packing of polymeric liquid crystals. Macromolecules 23 (1990) 2265-2269
22. Podgornik R., Rau D.C., and Parsegian V.A. Parametrization of direct and soft steric-undulatory forces between DNA double helical polyelectrolytes in solutions of several different anions and cations. Biophysical Journal 66 (1994) 962-971
23. Rau D.C., Lee B., and Parsegian V.A. Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices. Proceedings of the National Academy of Sciences USA 81 (1984) 2621-2625
24. Stevenson K.A., Mehta A., Sachenko P., Hansen K.M., and Thundat T. Nanomechanical effect of enzymatic manipulation of DNA on microcantilever surfaces. Langmuir 18 (2002) 8732-8736
25. Stachowiak J.C., Yue M., Castelino K., Chakraborty A., and Majumdar A. Chemomechanics of surface stresses induced by DNA hybridization. Langmuir 22 (2006) 263-268
26. Strey H.H., Parsegian V.A., and Podgornik R. Equation of state for DNA liquid crystals: fluctuation enhanced electrostatic double layer repulsion. Physical Review Letters 78 (1997) 895-898
27. Strey H.H., Parsegian V.A., and Podgornik R. Equation of state for polymer liquid crystals: theory and experiment. Physical Review E 59 (1999) 999-1008
28. Stump D.M., Watson P.J., and Fraser W.B. Mathematical modeling of interwound DNA supercoils. Journal of Biomechanics 33 (2000) 407-413
29. Wu G.H., Ji H.F., Hansen K.M., Thundat T., Datar R., Cote R., Hagan M.F., Chakraborty A.K., and Majumdar A. Origin of nanomechanical cantilever motion generated from biomolecular interactions. Proceedings of the National Academy of Sciences USA 98 (2001) 1560-1564
30. Zhang N.H. Thermoelastic stresses in multilayered beams. Thin Solid Films 515 (2007) 8402-8406
31. Zhang N.H., and Chen J.Z. An alternative two-variable model for bending problems of multilayered beams. ASME Journal of Applied Mechanics 75 (2008) 044503
32. Zhang N.H., and Chen J.Z. Elastic bending analysis of bilayered beams by an alternative two-variable method. European Journal of Mechanics A/Solids 28 (2009) 284-288 10.1016/j.euromechsol.2008.07.004
33. Zhang N.H., and Shan J.Y. An energy model for nanomechanical deflection of cantilever-DNA chip. Journal of the Mechanics and Physics of Solids 56 (2008) 2328-2337
34. Zhang N.H., and Xing J.J. An alternative model for elastic bending deformation of multilayered beams. Journal of Applied Physics 100 (2006) 103519
35. Zhang, N.H, Xing, J.J., Shan, J.Y., 2007a. Multiscale simulation for nanomechanical behavior of gene chips in label-free biodetection. In: Proceedings of the 5th International Conference of Nonlinear Mechanics, Shanghai University, Shanghai.
36. Zhang N.H., Shan J.Y., and Xing J.J. Piezoelectric properties of single-strand DNA molecular brush biolayers. Acta Mechanica Solida Sinica 20 (2007) 206-210