-
2
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl, B. and Allis, C. (2000) The language of covalent histone modifications Nature 403, 41-45
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.1
Allis, C.2
-
3
-
-
0034885838
-
Phosphorylation of histone variant regions in chromatin: Unlocking the linker?
-
Green, G. R. (2001) Phosphorylation of histone variant regions in chromatin: Unlocking the linker? Biochem. Cell Biol. 79, 275-287
-
(2001)
Biochem. Cell Biol.
, vol.79
, pp. 275-287
-
-
Green, G.R.1
-
4
-
-
0141929385
-
Binary switches and modification cassettes in histone biology and beyond
-
Fischle, W., Wang, Y., and Allis, C. D. (2003) Binary switches and modification cassettes in histone biology and beyond Nature 425, 475-479
-
(2003)
Nature
, vol.425
, pp. 475-479
-
-
Fischle, W.1
Wang, Y.2
Allis, C.D.3
-
5
-
-
0141483484
-
Identification of novel histone post-translational modifications by peptide mass fingerprinting
-
Zhang, L., Eugeni, E., Parthun, M. R., and Freitas, M. (2003) Identification of novel histone post-translational modifications by peptide mass fingerprinting Chromosoma 112, 77-86
-
(2003)
Chromosoma
, vol.112
, pp. 77-86
-
-
Zhang, L.1
Eugeni, E.2
Parthun, M.R.3
Freitas, M.4
-
6
-
-
7544241632
-
Regulated nucleosome mobility and the histone code
-
Cosgrove, M., Boeke, J., and Wolberger, C. (2004) Regulated nucleosome mobility and the histone code Nat. Struct. Mol. Biol. 11, 1037-1043
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 1037-1043
-
-
Cosgrove, M.1
Boeke, J.2
Wolberger, C.3
-
7
-
-
33846809241
-
Characterization of histones and their post-translational modifications by mass spectrometry
-
Garcia, B., Shabanowitz, J., and Hunt, D. (2007) Characterization of histones and their post-translational modifications by mass spectrometry Curr. Opin. Chem. Biol. 11, 66-73
-
(2007)
Curr. Opin. Chem. Biol.
, vol.11
, pp. 66-73
-
-
Garcia, B.1
Shabanowitz, J.2
Hunt, D.3
-
8
-
-
33845435463
-
The utility of ETD mass spectrometry in proteomic analysis
-
Mikesh, L., Ueberheide, B., Chi, A., Coon, J., Syka, J., Shabanowitz, J., and Hunt, D. (2006) The utility of ETD mass spectrometry in proteomic analysis Biochim. Biophys. Acta 1764, 1811-1822
-
(2006)
Biochim. Biophys. Acta
, vol.1764
, pp. 1811-1822
-
-
Mikesh, L.1
Ueberheide, B.2
Chi, A.3
Coon, J.4
Syka, J.5
Shabanowitz, J.6
Hunt, D.7
-
9
-
-
22144482323
-
Protein identification using sequential ion/ion reactions and tandem mass spectrometry
-
Coon, J., Ueberheide, B., Syka, J., Dryhurst, D., Ausio, J., Shabanowitz, J., and Hunt, D. (2005) Protein identification using sequential ion/ion reactions and tandem mass spectrometry Proc. Natl. Acad. Sci. U.S.A. 102, 9463-9468
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 9463-9468
-
-
Coon, J.1
Ueberheide, B.2
Syka, J.3
Dryhurst, D.4
Ausio, J.5
Shabanowitz, J.6
Hunt, D.7
-
10
-
-
0037154972
-
Epigenetic Codes for Heterochromatin Formation and Silencing: Rounding up the Usual Suspects
-
Richards, E. and Elgin, S. (2002) Epigenetic Codes for Heterochromatin Formation and Silencing: Rounding up the Usual Suspects Cell 108, 489-500
-
(2002)
Cell
, vol.108
, pp. 489-500
-
-
Richards, E.1
Elgin, S.2
-
11
-
-
15744396825
-
Controlling DNA methylation: Many roads to one modification
-
Freitag, M. and Selker, E. (2005) Controlling DNA methylation: Many roads to one modification Curr. Opin. Genet. Dev. 15, 191-199
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, pp. 191-199
-
-
Freitag, M.1
Selker, E.2
-
12
-
-
0037068378
-
DNA methylation and cancer
-
Jones, P. (2002) DNA methylation and cancer Oncogene 21, 5358-5360
-
(2002)
Oncogene
, vol.21
, pp. 5358-5360
-
-
Jones, P.1
-
13
-
-
13144251125
-
DNA methylation and cancer therapy: New developments and expectations
-
Esteller, M. (2005) DNA methylation and cancer therapy: New developments and expectations Curr. Opin. Oncol. 17, 55-60
-
(2005)
Curr. Opin. Oncol.
, vol.17
, pp. 55-60
-
-
Esteller, M.1
-
14
-
-
3042658499
-
DNA demethylation and cancer
-
Szyf, M., Pakneshan, P., and Rabbani, S. (2004) DNA demethylation and cancer Cancer Lett. 211, 133-143
-
(2004)
Cancer Lett.
, vol.211
, pp. 133-143
-
-
Szyf, M.1
Pakneshan, P.2
Rabbani, S.3
-
15
-
-
0036200469
-
Identification and Characterization of the Genes Encoding the Core Histones and Histone Variants of Neurospora crassa
-
Hays, S., Swanson, J., and Selker, E. (2001) Identification and Characterization of the Genes Encoding the Core Histones and Histone Variants of Neurospora crassa Genetics 160, 961-973
-
(2001)
Genetics
, vol.160
, pp. 961-973
-
-
Hays, S.1
Swanson, J.2
Selker, E.3
-
16
-
-
33645471026
-
Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry
-
Bonenfant, D., Coulot, M., Towbin, H., Schindler, P., and van Oostrum, J. (2006) Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry Mol. Cell. Proteomics 5, 541-552
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 541-552
-
-
Bonenfant, D.1
Coulot, M.2
Towbin, H.3
Schindler, P.4
Van Oostrum, J.5
-
17
-
-
32344453537
-
Gene-specific characterization of human histone H2B by electron capture dissociation
-
Siuti, N., Roth, M., Mizzen, C., Kelleher, N., and Pesavento, J. (2006) Gene-specific characterization of human histone H2B by electron capture dissociation J. Proteome Res. 5, 233-239
-
(2006)
J. Proteome Res.
, vol.5
, pp. 233-239
-
-
Siuti, N.1
Roth, M.2
Mizzen, C.3
Kelleher, N.4
Pesavento, J.5
-
18
-
-
0031661005
-
Mutations in the dim-1 gene of Neurospora crassa reduce the level of DNA methylation
-
Foss, H., Roberts, C., and Selker, E. U. (1998) Mutations in the dim-1 gene of Neurospora crassa reduce the level of DNA methylation Mol. Gen. Genet. 259, 60-71
-
(1998)
Mol. Gen. Genet.
, vol.259
, pp. 60-71
-
-
Foss, H.1
Roberts, C.2
Selker, E.U.3
-
19
-
-
0035422440
-
Dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora
-
Kouzminova, E. and Selker, E. U. (2001) dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora EMBO J. 20, 4309-4323
-
(2001)
EMBO J.
, vol.20
, pp. 4309-4323
-
-
Kouzminova, E.1
Selker, E.U.2
-
20
-
-
0035891265
-
A histone H3 methyltransferase controls DNA methylation in Neurospora crassa
-
Tamaru, H. and Selker, E. U. (2001) A histone H3 methyltransferase controls DNA methylation in Neurospora crassa Nature 414, 277-283
-
(2001)
Nature
, vol.414
, pp. 277-283
-
-
Tamaru, H.1
Selker, E.U.2
-
21
-
-
1242271994
-
HP1 is essential for DNA methylation in Neurospora
-
Freitag, M., Hickey, P., Khlafallah, T., Read, N. and Selker, E. (2004) HP1 is essential for DNA methylation in Neurospora Mol. Cell 13, 427-434
-
(2004)
Mol. Cell
, vol.13
, pp. 427-434
-
-
Freitag, M.1
Hickey, P.2
Khlafallah, T.3
Read, N.4
Selker, E.5
-
22
-
-
58049193981
-
Protein phosphatase PP1 is required for normal DNA methylation in Neurospora
-
Adhvaryu, K. K. and Selker, E. U. (2008) Protein phosphatase PP1 is required for normal DNA methylation in Neurospora Genes Dev. 22, 3391-3396
-
(2008)
Genes Dev.
, vol.22
, pp. 3391-3396
-
-
Adhvaryu, K.K.1
Selker, E.U.2
-
23
-
-
77952327803
-
Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin
-
Lewis, Z., Adhvaryu, K., Honda, S., Shriver, A., and Selker, E. U. (2010) Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin Proc. Natl. Acad. Sci. U.S.A. 107, 8310-8315
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 8310-8315
-
-
Lewis, Z.1
Adhvaryu, K.2
Honda, S.3
Shriver, A.4
Selker, E.U.5
-
24
-
-
0032482974
-
Trichostatin A causes selective loss of DNA methylation in Neurospora
-
Selker, E. U. (1998) Trichostatin A causes selective loss of DNA methylation in Neurospora Proc. Natl. Acad. Sci. U.S.A. 95, 9430-9435
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 9430-9435
-
-
Selker, E.U.1
-
25
-
-
77953902870
-
-
manuscript in preparation.
-
Smith, K., Dobosy, J., Do, D., Riefsnyder, J., Anderson, D., Green, G., and Selker, E. (2010) manuscript in preparation.
-
(2010)
-
-
Smith, K.1
Dobosy, J.2
Do, D.3
Riefsnyder, J.4
Anderson, D.5
Green, G.6
Selker, E.7
-
26
-
-
60349130646
-
Purification and analysis of variant and modified histones using 2D PAGE
-
Green, G. R. and Do, D. P. (2008) Purification and analysis of variant and modified histones using 2D PAGE Methods Mol. Biol. 464, 285-302
-
(2008)
Methods Mol. Biol.
, vol.464
, pp. 285-302
-
-
Green, G.R.1
Do, D.P.2
-
27
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J., McCormack, A., and Yates, J. (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database J. Am. Soc. Mass Spectrom. 5, 976-989
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.1
McCormack, A.2
Yates, J.3
-
28
-
-
27544511899
-
InsPecT: Identification of Posttranslationally Modified Peptides from Tandem Mass Spectra
-
Tanner, S., Shu, H., Frank, A., Wang, L., Zandi, E., Mumby, M., Pevzner, P., and Bafna, V. (2005) InsPecT: Identification of Posttranslationally Modified Peptides from Tandem Mass Spectra Anal. Chem. 77, 4626-4639
-
(2005)
Anal. Chem.
, vol.77
, pp. 4626-4639
-
-
Tanner, S.1
Shu, H.2
Frank, A.3
Wang, L.4
Zandi, E.5
Mumby, M.6
Pevzner, P.7
Bafna, V.8
-
29
-
-
0038531105
-
Multiple roles for Saccharomyces cerevisiae histone H2A in telomere position effect, spt S sppression and DSB repair
-
Wyatt, H., Liaw, H., Green, G. R., and Lustig, A. J. (2003) Multiple roles for Saccharomyces cerevisiae histone H2A in telomere position effect, spt S sppression and DSB repair Genetics 164, 47-64
-
(2003)
Genetics
, vol.164
, pp. 47-64
-
-
Wyatt, H.1
Liaw, H.2
Green, G.R.3
Lustig, A.J.4
-
30
-
-
0020149539
-
A multisample device for electroelution, concentration and dialysis of proteins from fixed and stained gel slices
-
Green, G. R., Poccia, D. L., and Herlands, L. (1982) A multisample device for electroelution, concentration and dialysis of proteins from fixed and stained gel slices Anal. Biochem. 123, 66-73
-
(1982)
Anal. Biochem.
, vol.123
, pp. 66-73
-
-
Green, G.R.1
Poccia, D.L.2
Herlands, L.3
-
31
-
-
0025984862
-
Fragmentation of proteins by S. aureus strain V8 protease
-
Sorensen, S., Sorensen, T., and Breddam, K. (1991) Fragmentation of proteins by S. aureus strain V8 protease FEBS Lett. 294, 195-197
-
(1991)
FEBS Lett.
, vol.294
, pp. 195-197
-
-
Sorensen, S.1
Sorensen, T.2
Breddam, K.3
-
32
-
-
29144491494
-
Resetting the epigenetic histone code i the MRL-lpr/lpr mouse model of lupus by histone deacetylase inhibition
-
Garcia, B., Busby, S., Shabanowitz, J., Hunt, D., and Mishra, N. (2005) Resetting the epigenetic histone code in the MRL-lpr/lpr mouse model of lupus by histone deacetylase inhibition J. Proteome Res. 4, 2032-2042
-
(2005)
J. Proteome Res.
, vol.4
, pp. 2032-2042
-
-
Garcia, B.1
Busby, S.2
Shabanowitz, J.3
Hunt, D.4
Mishra, N.5
-
33
-
-
3042765151
-
Novel linear quadrupole ion trap/FT mass spectrometer: Performance characterization and use in the comparative analysis of histone H3 post-translational modifications
-
Syka, J., Marto, J., Bai, D., Horning, S., Senko, M., Schwartz, J., Ueberheide, B., Garcia, B., Busby, S., Muratore, T., Shabanowitz, J., and Hunt, D. (2004) Novel linear quadrupole ion trap/FT mass spectrometer: Performance characterization and use in the comparative analysis of histone H3 post-translational modifications J. Proteome Res. 3, 621-626
-
(2004)
J. Proteome Res.
, vol.3
, pp. 621-626
-
-
Syka, J.1
Marto, J.2
Bai, D.3
Horning, S.4
Senko, M.5
Schwartz, J.6
Ueberheide, B.7
Garcia, B.8
Busby, S.9
Muratore, T.10
Shabanowitz, J.11
Hunt, D.12
-
34
-
-
0034582319
-
Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules
-
Horn, D., Zubarev, R., and McLafferty, F. (2000) Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules J. Am. Soc. Mass Spectrom. 11, 320-332
-
(2000)
J. Am. Soc. Mass Spectrom.
, vol.11
, pp. 320-332
-
-
Horn, D.1
Zubarev, R.2
McLafferty, F.3
-
35
-
-
1542609551
-
Support vector machine classification on the web
-
Pavlidis, P., Wapinski, I., and Noble, W. (2004) Support vector machine classification on the web Bioinformatics 20, 586-587
-
(2004)
Bioinformatics
, vol.20
, pp. 586-587
-
-
Pavlidis, P.1
Wapinski, I.2
Noble, W.3
-
36
-
-
7544229161
-
Application of mass spectrometry to the identification and quantification of histone post-translational modifications
-
Freitas, M., Sklenar, A., and Parthun, M. (2004) Application of mass spectrometry to the identification and quantification of histone post-translational modifications J. Cell. Biochem. 92, 691-700
-
(2004)
J. Cell. Biochem.
, vol.92
, pp. 691-700
-
-
Freitas, M.1
Sklenar, A.2
Parthun, M.3
-
37
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
Washburn, M., Wolters, D., and Yates, J. (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology Nat. Biotechnol. 19, 242-247
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 242-247
-
-
Washburn, M.1
Wolters, D.2
Yates, J.3
-
38
-
-
0042972838
-
A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: Support vector machine classification of peptide MS/MS spectra and SEQUEST scores
-
Anderson, D., Li, W., Payan, D., and Noble, W. (2003) A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: Support vector machine classification of peptide MS/MS spectra and SEQUEST scores J. Proteome Res. 2, 137-146
-
(2003)
J. Proteome Res.
, vol.2
, pp. 137-146
-
-
Anderson, D.1
Li, W.2
Payan, D.3
Noble, W.4
-
39
-
-
0014430032
-
Purification and properties of clostridiopeptidase B (clostripain)
-
Mitchell, W. and Harrington, W. (1968) Purification and properties of clostridiopeptidase B (clostripain) J. Biol. Chem. 243, 4683-4692
-
(1968)
J. Biol. Chem.
, vol.243
, pp. 4683-4692
-
-
Mitchell, W.1
Harrington, W.2
-
40
-
-
32844468049
-
Histone arginine methylation and its dynamic regulation
-
Wysocka, J., Allis, C., and Coonrod, S. (2006) Histone arginine methylation and its dynamic regulation Front. Biosci. 11, 344-355
-
(2006)
Front. Biosci.
, vol.11
, pp. 344-355
-
-
Wysocka, J.1
Allis, C.2
Coonrod, S.3
-
41
-
-
0037147140
-
Nuclear localization of peptidylarginine deiminase v and histone deimination in granulocytes
-
Nakashima, K., Hagiwara, T., and Yamada, M. (2002) Nuclear localization of peptidylarginine deiminase V and histone deimination in granulocytes J. Biol. Chem. 277, 49562-49568
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 49562-49568
-
-
Nakashima, K.1
Hagiwara, T.2
Yamada, M.3
-
42
-
-
17144363594
-
Deimination of histone H2A and H4 at arginine 3 in HL-60 granulocytes
-
Hagiwara, T., Hidaka, Y., and Yamada, M. (2005) Deimination of histone H2A and H4 at arginine 3 in HL-60 granulocytes Biochemistry 44, 5827-5834
-
(2005)
Biochemistry
, vol.44
, pp. 5827-5834
-
-
Hagiwara, T.1
Hidaka, Y.2
Yamada, M.3
-
43
-
-
0019436684
-
Properties of peptidylarginine deiminase from the epidermis of newborn rats
-
Fujisaki, M. and Sugawara, K. (1981) Properties of peptidylarginine deiminase from the epidermis of newborn rats J. Biochem. 89, 257-263
-
(1981)
J. Biochem.
, vol.89
, pp. 257-263
-
-
Fujisaki, M.1
Sugawara, K.2
-
44
-
-
4444372638
-
Histone deimination antagonizes arginine methylation
-
Cuthbert, G., Daujat, S., Snowden, A., Erdjument-Bromage, H., Hagiwara, T., Yamada, M., Schneider, R., Gregory, P., Tempst, P., Bannister, A., and Kouzarides, T. (2004) Histone deimination antagonizes arginine methylation Cell 118, 545-553
-
(2004)
Cell
, vol.118
, pp. 545-553
-
-
Cuthbert, G.1
Daujat, S.2
Snowden, A.3
Erdjument-Bromage, H.4
Hagiwara, T.5
Yamada, M.6
Schneider, R.7
Gregory, P.8
Tempst, P.9
Bannister, A.10
Kouzarides, T.11
-
45
-
-
33751001725
-
Histone citrullination by protein arginine deiminase: Is arginine methylation a green light or a roadblock?
-
Thompson, P. and Fast, W. (2006) Histone citrullination by protein arginine deiminase: Is arginine methylation a green light or a roadblock? ACS Chem. Biol. 1, 433-441
-
(2006)
ACS Chem. Biol.
, vol.1
, pp. 433-441
-
-
Thompson, P.1
Fast, W.2
-
46
-
-
33750142707
-
Age-related changes in human crystallins determined from comparative analysis of post-translational modifications in young and aged lens: Does deamidation contribute to crystallin insolubility?
-
Wilmarth, P., Tanner, S., Dasari, S., Nagalla, S., Riviere, M., Bafna, V., Pevzner, P., and David, L. (2006) Age-related changes in human crystallins determined from comparative analysis of post-translational modifications in young and aged lens: Does deamidation contribute to crystallin insolubility? J. Proteome Res. 5, 2554-2566
-
(2006)
J. Proteome Res.
, vol.5
, pp. 2554-2566
-
-
Wilmarth, P.1
Tanner, S.2
Dasari, S.3
Nagalla, S.4
Riviere, M.5
Bafna, V.6
Pevzner, P.7
David, L.8
-
47
-
-
0034614423
-
Histone H2B phosphorylation in mammalian apoptotic cells. An association with DNA fragmentation
-
Ajiro, K. (2000) Histone H2B phosphorylation in mammalian apoptotic cells. An association with DNA fragmentation J. Biol. Chem. 275, 439-443
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 439-443
-
-
Ajiro, K.1
-
48
-
-
0038293152
-
Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase
-
Cheung, W., Ajiro, K., Samejima, K., Kloc, M., Cheung, P., Mizzen, C., Beeser, A., Etkin, L., Chernoff, J., Earnshaw, W., and Allis, C. D. (2003) Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase Cell 113, 507-517
-
(2003)
Cell
, vol.113
, pp. 507-517
-
-
Cheung, W.1
Ajiro, K.2
Samejima, K.3
Kloc, M.4
Cheung, P.5
Mizzen, C.6
Beeser, A.7
Etkin, L.8
Chernoff, J.9
Earnshaw, W.10
Allis, C.D.11
-
49
-
-
0018800811
-
ADP ribosylation of rat liver nucleosomal core histones
-
Burzio, L., Riquelme, P., and Koide, S. (1979) ADP ribosylation of rat liver nucleosomal core histones J. Biol. Chem. 254, 3029-3037
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 3029-3037
-
-
Burzio, L.1
Riquelme, P.2
Koide, S.3
-
50
-
-
33745642479
-
Epigenetic regulation of chromatin structure and gene function by biotin
-
Hassan, Y. and Zempleni, J. (2006) Epigenetic regulation of chromatin structure and gene function by biotin J. Nutr. 136, 1763-1765
-
(2006)
J. Nutr.
, vol.136
, pp. 1763-1765
-
-
Hassan, Y.1
Zempleni, J.2
-
51
-
-
34948813595
-
Characterization of post-translational modifications of histone H2B-variants isolated from Arabidopsis thaliana
-
Bergmüller, E., Gehrig, P., and Gruissem, W. (2007) Characterization of post-translational modifications of histone H2B-variants isolated from Arabidopsis thaliana J. Proteome Res. 6, 3655-3668
-
(2007)
J. Proteome Res.
, vol.6
, pp. 3655-3668
-
-
Bergmüller, E.1
Gehrig, P.2
Gruissem, W.3
-
52
-
-
22544461653
-
Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1
-
Shahbazian, M., Zhang, K., and Grunstein, M. (2005) Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1 Mol. Cell 19, 271-277
-
(2005)
Mol. Cell
, vol.19
, pp. 271-277
-
-
Shahbazian, M.1
Zhang, K.2
Grunstein, M.3
-
53
-
-
0036307707
-
Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution
-
Davey, C., Sargent, D., Luger, K., Maeder, A., and Richmond, T. (2002) Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution J. Mol. Biol. 319, 1097-1113
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 1097-1113
-
-
Davey, C.1
Sargent, D.2
Luger, K.3
Maeder, A.4
Richmond, T.5
-
54
-
-
77953882348
-
Mapping of Lysine Methylation and Acetylation in Core Histones of Neurospora crassa
-
DOI 10.1021/bi1001322
-
Xiong, L., Adhvaryu, K., Selker, E. U., and Wang, Y. (2010) Mapping of Lysine Methylation and Acetylation in Core Histones of Neurospora crassa Biochemistry DOI 10.1021/bi1001322
-
(2010)
Biochemistry
-
-
Xiong, L.1
Adhvaryu, K.2
Selker, E.U.3
Wang, Y.4
-
55
-
-
0029379757
-
Histones of Chlamydomonas reinhardtii. Synthesis, acetylation and methylation
-
Waterborg, J., Robertson, A., Tatar, D., Borza, C., and Davie, J. (1995) Histones of Chlamydomonas reinhardtii. Synthesis, acetylation and methylation Plant Physiol. 109, 393-407
-
(1995)
Plant Physiol.
, vol.109
, pp. 393-407
-
-
Waterborg, J.1
Robertson, A.2
Tatar, D.3
Borza, C.4
Davie, J.5
-
56
-
-
0034724871
-
Steady-state Levels of Histone Acetylation in Saccharomyces cerevisiae
-
Waterborg, J. (2000) Steady-state Levels of Histone Acetylation in Saccharomyces cerevisiae J. Biol. Chem. 275, 13007-13011
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 13007-13011
-
-
Waterborg, J.1
-
57
-
-
0037123767
-
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
-
Robyr, D., Suka, Y., Xenarios, I., Kurdistani, S. K., Wang, A., Suka, N., and Grunstein, M. (2002) Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases Cell 109, 437-446
-
(2002)
Cell
, vol.109
, pp. 437-446
-
-
Robyr, D.1
Suka, Y.2
Xenarios, I.3
Kurdistani, S.K.4
Wang, A.5
Suka, N.6
Grunstein, M.7
-
58
-
-
33645793778
-
Structural basis for histone N-terminal recognition by human peptidylarginine deiminase 4
-
Arita, K., Shimizu, T., Hashimoto, H., Hidaka, Y., Yamada, M., and Sato, M. (2006) Structural basis for histone N-terminal recognition by human peptidylarginine deiminase 4 Proc. Natl. Acad. Sci. U.S.A. 103, 5291-5296
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 5291-5296
-
-
Arita, K.1
Shimizu, T.2
Hashimoto, H.3
Hidaka, Y.4
Yamada, M.5
Sato, M.6
-
59
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
Notredame, C., Higgins, D., and Heringa, J. (2000) T-Coffee: A novel method for fast and accurate multiple sequence alignment J. Mol. Biol. 302, 205-217
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.2
Heringa, J.3
-
60
-
-
33847759102
-
Methylation of arginine residues interferes with citrullination by peptidylarginine deiminases in vitro
-
Raijmakers, R., Zendman, A. J., Egberts, W., Vossenaar, E., Raats, J., Soede- uijbregts, C., Rutjes, F., van Veelen, P., Drijfhout, J., and Pruijn, G. (2007) Methylation of arginine residues interferes with citrullination by peptidylarginine deiminases in vitro J. Mol. Biol. 367, 1118-1129
-
(2007)
J. Mol. Biol.
, vol.367
, pp. 1118-1129
-
-
Raijmakers, R.1
Zendman, A.J.2
Egberts, W.3
Vossenaar, E.4
Raats, J.5
Soede-Huijbregts, C.6
Rutjes, F.7
Van Veelen, P.8
Drijfhout, J.9
Pruijn, G.10
-
61
-
-
0035854372
-
State of the arg: Protein methylation at arginine comes of age
-
McBride, A. and Silver, P. (2001) State of the arg: Protein methylation at arginine comes of age Cell 106, 5-8
-
(2001)
Cell
, vol.106
, pp. 5-8
-
-
McBride, A.1
Silver, P.2
-
62
-
-
33846226977
-
Histone arginine methylation regulates pluripotency in the early mouse embryo
-
Torres-Padilla, M., Parfitt, D., Kouzarides, T., and Zernicka-Goetz, M. (2007) Histone arginine methylation regulates pluripotency in the early mouse embryo Nature 445, 214-218
-
(2007)
Nature
, vol.445
, pp. 214-218
-
-
Torres-Padilla, M.1
Parfitt, D.2
Kouzarides, T.3
Zernicka-Goetz, M.4
-
63
-
-
12144287318
-
Lessons from the Genome Sequence of Neurospora crassa: Tracing the Path from Genomic Blueprint to Multicellular Organism
-
Borkovich, K. 2004, Lessons from the Genome Sequence of Neurospora crassa: Tracing the Path from Genomic Blueprint to Multicellular Organism Microbiol. Mol. Biol. Rev. 68, 1-108
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 1-108
-
-
Borkovich, K.1
-
64
-
-
4143111261
-
Histone methyltransferases in Aspergillus nidulans: Evidence for a novel enzyme with a unique substrate specificity
-
Trojer, P., Dangl, M., Bauer, I., Graessle, S., Loidl, P., and Brosch, G. (2004) Histone methyltransferases in Aspergillus nidulans: Evidence for a novel enzyme with a unique substrate specificity Biochemistry 43, 10834-10843
-
(2004)
Biochemistry
, vol.43
, pp. 10834-10843
-
-
Trojer, P.1
Dangl, M.2
Bauer, I.3
Graessle, S.4
Loidl, P.5
Brosch, G.6
-
65
-
-
33744795753
-
Blimp1 associates with Prmt5 and directs histone arginine methylation in mouse germ cells
-
Ancelin, K., Lange, U., Hajkova, P., Schneider, R., Bannister, A. J., Kouzarides, T., and Surani, M. (2006) Blimp1 associates with Prmt5 and directs histone arginine methylation in mouse germ cells Nat. Cell Biol. 8, 623-630
-
(2006)
Nat. Cell Biol.
, vol.8
, pp. 623-630
-
-
Ancelin, K.1
Lange, U.2
Hajkova, P.3
Schneider, R.4
Bannister, A.J.5
Kouzarides, T.6
Surani, M.7
-
66
-
-
31344465966
-
MBD2/NuRD and MBD3/NuRD, two distinct complexes with different biochemical and functional properties
-
Le Guezennec, X., Vermeulen, M., Brinkman, A., Hoeijmakers, W., Cohen, A., Lasonder, E., and Stunnenberg, H. (2006) MBD2/NuRD and MBD3/NuRD, two distinct complexes with different biochemical and functional properties Mol. Cell. Biol. 26, 843-851
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 843-851
-
-
Le Guezennec, X.1
Vermeulen, M.2
Brinkman, A.3
Hoeijmakers, W.4
Cohen, A.5
Lasonder, E.6
Stunnenberg, H.7
-
67
-
-
3342936604
-
PRMT3 is a ribosomal protein methyltransferase that affects the cellular levels of ribosomal subunits
-
Bachand, F. and Silver, P. (2004) PRMT3 is a ribosomal protein methyltransferase that affects the cellular levels of ribosomal subunits EMBO J. 23, 2641-2650
-
(2004)
EMBO J.
, vol.23
, pp. 2641-2650
-
-
Bachand, F.1
Silver, P.2
-
68
-
-
34447119527
-
Ribosomal protein rpS2 is hypomethylated in PRMT3-deficient mice
-
Swiercz, R., Cheng, D., Kim, D., and Bedford, M. (2007) Ribosomal protein rpS2 is hypomethylated in PRMT3-deficient mice J. Biol. Chem. 282, 16917-16923
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 16917-16923
-
-
Swiercz, R.1
Cheng, D.2
Kim, D.3
Bedford, M.4
-
69
-
-
0023320664
-
The structure of ubiquitinated histone H2B
-
Thorne, A., Sautiere, P., Briand, G., and Crane-Robinson, C. (1987) The structure of ubiquitinated histone H2B EMBO J. 6, 1005-1010
-
(1987)
EMBO J.
, vol.6
, pp. 1005-1010
-
-
Thorne, A.1
Sautiere, P.2
Briand, G.3
Crane-Robinson, C.4
-
70
-
-
33646580356
-
Deciphering the roles of the histone H2B N-terminal domain in genome-wide transcription
-
Parra, M., Kerr, D., Fahy, D., Pouchnik, D., and Wyrick, J. (2006) Deciphering the roles of the histone H2B N-terminal domain in genome-wide transcription Mol. Cell. Biol. 26, 3842-3852
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 3842-3852
-
-
Parra, M.1
Kerr, D.2
Fahy, D.3
Pouchnik, D.4
Wyrick, J.5
-
71
-
-
33746298724
-
Quantitative proteomic analysis of post-translational modifications of human histones
-
Beck, H. C., Nielsen, E., Matthiesen, R., Jensen, L., Sehested, M., Finn, P., Grauslund, M., Hansen, A., and Jensen, O. (2006) Quantitative proteomic analysis of post-translational modifications of human histones Mol. Cell. Proteomics 5, 1314-1325
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 1314-1325
-
-
Beck, H.C.1
Nielsen, E.2
Matthiesen, R.3
Jensen, L.4
Sehested, M.5
Finn, P.6
Grauslund, M.7
Hansen, A.8
Jensen, O.9
-
72
-
-
33749669082
-
Histone H2B deacetylation at lysine 11 is required for yeast apoptosis induced by phosphorylation of H2B at serine 10
-
Ahn, S., Diaz, R., Grunstein, M., and Allis, C. (2006) Histone H2B deacetylation at lysine 11 is required for yeast apoptosis induced by phosphorylation of H2B at serine 10 Mol. Cell 24, 211-220
-
(2006)
Mol. Cell
, vol.24
, pp. 211-220
-
-
Ahn, S.1
Diaz, R.2
Grunstein, M.3
Allis, C.4
-
73
-
-
0344495330
-
A protein with antimicrobial activity in the skin of Schlegel's green tree frog Rhacophorus schlegelii (Rhacophoridae) identified as histone H2B
-
Kawasaki, H., Isaacson, T., Iwamuro, S., and Conlon, J. (2003) A protein with antimicrobial activity in the skin of Schlegel's green tree frog Rhacophorus schlegelii (Rhacophoridae) identified as histone H2B Biochem. Biophys. Res. Commun. 312, 1082-1086
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.312
, pp. 1082-1086
-
-
Kawasaki, H.1
Isaacson, T.2
Iwamuro, S.3
Conlon, J.4
-
74
-
-
5644231221
-
Characterization of Tetrahymena Histone H2B Variants and Posttranslational Populations by Electron Capture Dissociation (ECD) Fourier Transform Ion Cyclotron Mass Spectrometry (FT-ICR MS)
-
Medzihradszky, K., Zhang, X., Chalkley, R. J., Guan, S., McFarland, M. A., Chalmers, M. J., Marshall, A. G., Diaz, R. L., Allis, C. D., and Burlingame, A. L. (2004) Characterization of Tetrahymena Histone H2B Variants and Posttranslational Populations by Electron Capture Dissociation (ECD) Fourier Transform Ion Cyclotron Mass Spectrometry (FT-ICR MS) Mol. Cell. Proteomics 3, 872-876
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 872-876
-
-
Medzihradszky, K.1
Zhang, X.2
Chalkley, R.J.3
Guan, S.4
McFarland, M.A.5
Chalmers, M.J.6
Marshall, A.G.7
Diaz, R.L.8
Allis, C.D.9
Burlingame, A.L.10
-
75
-
-
34249779529
-
Pervasive combinatorial modification of histone H3 in human cells
-
Garcia, B., Pesavento, J., Mizzen, C., and Kelleher, N. (2007) Pervasive combinatorial modification of histone H3 in human cells Nat. Methods 4, 487-489
-
(2007)
Nat. Methods
, vol.4
, pp. 487-489
-
-
Garcia, B.1
Pesavento, J.2
Mizzen, C.3
Kelleher, N.4
-
76
-
-
29644437065
-
Truncation, deamidation, and oxidation of histone H2B in cells cultured with nickel(II)
-
Karaczyn, A., Golebiowski, F., and Kasprzak, K. (2005) Truncation, deamidation, and oxidation of histone H2B in cells cultured with nickel(II) Chem. Res. Toxicol. 18, 1934-1942
-
(2005)
Chem. Res. Toxicol.
, vol.18
, pp. 1934-1942
-
-
Karaczyn, A.1
Golebiowski, F.2
Kasprzak, K.3
-
77
-
-
0035865387
-
Regulation of cell function by methionine oxidation and reduction
-
Hoshi, T. and Heinemann, S. (2001) Regulation of cell function by methionine oxidation and reduction J. Physiol. 531, 1-11
-
(2001)
J. Physiol.
, vol.531
, pp. 1-11
-
-
Hoshi, T.1
Heinemann, S.2
-
78
-
-
0031808347
-
Electrophoresis-related protein modification: Alkylation of carboxy residues revealed by mass spectrometry
-
Haebel, S., Albrecht, T., Sparbier, K., Walden, P., Komer, R., and Steup, M. (1998) Electrophoresis-related protein modification: Alkylation of carboxy residues revealed y mass spectrometry Electrophoresis 19, 679-686
-
(1998)
Electrophoresis
, vol.19
, pp. 679-686
-
-
Haebel, S.1
Albrecht, T.2
Sparbier, K.3
Walden, P.4
Komer, R.5
Steup, M.6
-
79
-
-
33645972889
-
Asparagine deamidation: PH-dependent mechanism from density functional theory
-
Peters, B. and Trout, B. (2006) Asparagine deamidation: pH-dependent mechanism from density functional theory Biochemistry 45, 5384-5392
-
(2006)
Biochemistry
, vol.45
, pp. 5384-5392
-
-
Peters, B.1
Trout, B.2
|