메뉴 건너뛰기




Volumn 7, Issue 2, 2010, Pages 248-252

Sequence based identification of RNA editing sites

Author keywords

A to I RNA editing; Alu repeats; Bioinformatics; Human genome; Next generation sequencing

Indexed keywords

TRANSCRIPTOME;

EID: 77953752896     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.7.2.11565     Document Type: Review
Times cited : (30)

References (60)
  • 1
    • 0025995296 scopus 로고
    • RNA editing in brain controls a determinant of ion flow in glutamate-gated channels
    • Sommer B, Kohler M, Sprengel R, Seeburg PH. RNA editing in brain controls a determinant of ion flow in glutamate-gated channels. Cell 1991; 67:11-9.
    • (1991) Cell , vol.67 , pp. 11-19
    • Sommer, B.1    Kohler, M.2    Sprengel, R.3    Seeburg, P.H.4
  • 4
    • 0034535312 scopus 로고    scopus 로고
    • Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis
    • Wang Q, Khillan J, Gadue P, Nishikura K. Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis. Science 2000; 290:1765-8.
    • (2000) Science , vol.290 , pp. 1765-1768
    • Wang, Q.1    Khillan, J.2    Gadue, P.3    Nishikura, K.4
  • 5
    • 0035807807 scopus 로고    scopus 로고
    • Underediting of glutamate receptor GluR-B mRNA in malignant gliomas
    • Maas S, Patt S, Schrey M, Rich A. Underediting of glutamate receptor GluR-B mRNA in malignant gliomas. Proc Natl Acad Sci U S A 2001; 98:14687-92.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 14687-14692
    • Maas, S.1    Patt, S.2    Schrey, M.3    Rich, A.4
  • 7
    • 0037171846 scopus 로고    scopus 로고
    • Altered editing of serotonin 2C receptor pre-mRNA in the prefrontal cortex of depressed suicide victims
    • Gurevich I, Tamir H, Arango V, Dwork AJ, Mann JJ, Schmauss C. Altered editing of serotonin 2C receptor pre-mRNA in the prefrontal cortex of depressed suicide victims. Neuron 2002; 34:349-56.
    • (2002) Neuron , vol.34 , pp. 349-356
    • Gurevich, I.1    Tamir, H.2    Arango, V.3    Dwork, A.J.4    Mann, J.J.5    Schmauss, C.6
  • 8
    • 0029610443 scopus 로고
    • Early-onset epilepsy and postnatal lethality associated with an editing-deficient GluR-B allele in mice
    • Brusa R, Zimmermann F, Koh DS, Feldmeyer D, Gass P, Seeburg PH, Sprengel R. Early-onset epilepsy and postnatal lethality associated with an editing-deficient GluR-B allele in mice. Science 1995; 270:1677-80.
    • (1995) Science , vol.270 , pp. 1677-1680
    • Brusa, R.1    Zimmermann, F.2    Koh, D.S.3    Feldmeyer, D.4    Gass, P.5    Seeburg, P.H.6    Sprengel, R.7
  • 10
    • 57849136005 scopus 로고    scopus 로고
    • ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling
    • Hartner JC, Walkley CR, Lu J, Orkin SH. ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling. Nature immunology 2009; 10:109-15.
    • (2009) Nature Immunology , vol.10 , pp. 109-115
    • Hartner, J.C.1    Walkley, C.R.2    Lu, J.3    Orkin, S.H.4
  • 11
    • 0032481315 scopus 로고    scopus 로고
    • Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA
    • Paul MS, Bass BL. Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. Embo J 1998; 17:1120-7.
    • (1998) Embo J , vol.17 , pp. 1120-1127
    • Paul, M.S.1    Bass, B.L.2
  • 12
    • 0033022121 scopus 로고    scopus 로고
    • Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNA
    • Morse DP, Bass BL. Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNA. Proc Natl Acad Sci U S A 1999; 96:6048-53.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 6048-6053
    • Morse, D.P.1    Bass, B.L.2
  • 13
    • 28544447032 scopus 로고    scopus 로고
    • A method to find tissue-specific novel sites of selective adenosine deamination
    • Ohlson J, Enstero M, Sjoberg BM, Ohman M. A method to find tissue-specific novel sites of selective adenosine deamination. Nucleic acids research 2005;33:e167.
    • (2005) Nucleic Acids Research , vol.33
    • Ohlson, J.1    Enstero, M.2    Sjoberg, B.M.3    Ohman, M.4
  • 15
    • 34848855562 scopus 로고    scopus 로고
    • A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons
    • Chateigner-Boutin AL, Small I. A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons. Nucleic acids research 2007; 35:e114.
    • (2007) Nucleic Acids Research , vol.35
    • Chateigner-Boutin, A.L.1    Small, I.2
  • 16
    • 39949083012 scopus 로고    scopus 로고
    • A real-time PCR method for the quantitative analysis of RNA editing at specific sites
    • Chen YC, Kao SC, Chou HC, Lin WH, Wong FH, Chow WY. A real-time PCR method for the quantitative analysis of RNA editing at specific sites. Anal Biochem 2008; 375:46-52.
    • (2008) Anal Biochem , vol.375 , pp. 46-52
    • Chen, Y.C.1    Kao, S.C.2    Chou, H.C.3    Lin, W.H.4    Wong, F.H.5    Chow, W.Y.6
  • 18
    • 34548575784 scopus 로고    scopus 로고
    • A method for finding sites of selective adenosine deamination
    • Ohlson J, Ohman M. A method for finding sites of selective adenosine deamination. Methods Enzymol 2007; 424:289-300.
    • (2007) Methods Enzymol , vol.424 , pp. 289-300
    • Ohlson, J.1    Ohman, M.2
  • 20
    • 67349173812 scopus 로고    scopus 로고
    • TaqMan-based, realtime quantitative polymerase chain reaction method for RNA editing analysis
    • Wong K, Lyddon R, Dracheva S. TaqMan-based, realtime quantitative polymerase chain reaction method for RNA editing analysis. Anal Biochem 2009; 390:173-80.
    • (2009) Anal Biochem , vol.390 , pp. 173-180
    • Wong, K.1    Lyddon, R.2    Dracheva, S.3
  • 23
    • 0042528670 scopus 로고    scopus 로고
    • Nervous system targets of RNA editing identified by comparative genomics
    • Hoopengardner B, Bhalla T, Staber C, Reenan R. Nervous system targets of RNA editing identified by comparative genomics. Science 2003; 301:832-6.
    • (2003) Science , vol.301 , pp. 832-836
    • Hoopengardner, B.1    Bhalla, T.2    Staber, C.3    Reenan, R.4
  • 25
    • 20744459167 scopus 로고    scopus 로고
    • A bioinformatic screen for novel A-I RNA editing sites reveals recoding editing in BC10
    • Clutterbuck DR, Leroy A, O'Connell MA, Semple CA. A bioinformatic screen for novel A-I RNA editing sites reveals recoding editing in BC10. Bioinformatics 2005;21:2590-5.
    • (2005) Bioinformatics , vol.21 , pp. 2590-2595
    • Clutterbuck, D.R.1    Leroy, A.2    O'Connell, M.A.3    Semple, C.A.4
  • 26
    • 62849091724 scopus 로고    scopus 로고
    • Conserved recoding RNA editing of vertebrate C1q-related factor C1QL1
    • Sie CP, Maas S. Conserved recoding RNA editing of vertebrate C1q-related factor C1QL1. FEBS Lett 2009;583:1171-4.
    • (2009) FEBS Lett , vol.583 , pp. 1171-1174
    • Sie, C.P.1    Maas, S.2
  • 27
    • 34247372269 scopus 로고    scopus 로고
    • Editing modifies the GABA(A) receptor subunit alpha3
    • Ohlson J, Pedersen JS, Haussler D, Ohman M. Editing modifies the GABA(A) receptor subunit alpha3. Rna 2007; 13:698-703.
    • (2007) Rna , vol.13 , pp. 698-703
    • Ohlson, J.1    Pedersen, J.S.2    Haussler, D.3    Ohman, M.4
  • 29
    • 44149094073 scopus 로고    scopus 로고
    • Specificity of ADAR-mediated RNA editing in newly identified targets
    • DOI 10.1261/rna.923308
    • Riedmann EM, Schopoff S, Hartner JC, Jantsch MF. Specificity of ADAR-mediated RNA editing in newly identified targets. Rna 2008; 14:1110-8. (Pubitemid 351717491)
    • (2008) RNA , vol.14 , Issue.6 , pp. 1110-1118
    • Riedmann, E.M.1    Schopoff, S.2    Hartner, J.C.3    Jantsch, M.F.4
  • 31
    • 57349192059 scopus 로고    scopus 로고
    • Newly identified ADAR-mediated A-to-I editing positions as a tool for ALS research
    • Kwak S, Nishimoto Y, Yamashita T. Newly identified ADAR-mediated A-to-I editing positions as a tool for ALS research. RNA biology 2008; 5:193-7.
    • (2008) RNA Biology , vol.5 , pp. 193-197
    • Kwak, S.1    Nishimoto, Y.2    Yamashita, T.3
  • 32
    • 4744347763 scopus 로고    scopus 로고
    • Control of human potassium channel inactivation by editing of a small mRNA hairpin
    • DOI 10.1038/nsmb825
    • Bhalla T, Rosenthal JJ, Holmgren M, Reenan R. Control of human potassium channel inactivation by editing of a small mRNA hairpin. Nature structural & molecular biology 2004; 11:950-6. (Pubitemid 39315298)
    • (2004) Nature Structural and Molecular Biology , vol.11 , Issue.10 , pp. 950-956
    • Bhalla, T.1    Rosenthal, J.J.C.2    Holmgren, M.3    Reenan, R.4
  • 39
    • 12344300804 scopus 로고    scopus 로고
    • Widespread A-to-I RNA Editing of Alu-Containing mRNAs in the Human Transcriptome
    • Athanasiadis A, Rich A, Maas S. Widespread A-to-I RNA Editing of Alu-Containing mRNAs in the Human Transcriptome. PLoS Biol 2004; 2:e391.
    • (2004) PLoS Biol , vol.2
    • Athanasiadis, A.1    Rich, A.2    Maas, S.3
  • 42
    • 10944271858 scopus 로고    scopus 로고
    • A survey of RNA editing in human brain
    • DOI 10.1101/gr.2951204
    • Blow M, Futreal PA, Wooster R, Stratton MR. A survey of RNA editing in human brain. Genome research 2004; 14:2379-87. (Pubitemid 40012220)
    • (2004) Genome Research , vol.14 , Issue.12 , pp. 2379-2387
    • Blow, M.1    Futreal, A.P.2    Wooster, R.3    Stratton, M.R.4
  • 43
    • 0344305774 scopus 로고    scopus 로고
    • Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants
    • Tonkin LA, Bass BL. Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants. Science 2003;302:1725.
    • (2003) Science , vol.302 , pp. 1725
    • Tonkin, L.A.1    Bass, B.L.2
  • 46
    • 33847317017 scopus 로고    scopus 로고
    • Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
    • DOI 10.1126/science.1138050
    • Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG, Nishikura K. Redirection of silencing targets by adenosine-to-inosine editing of miRNAs. Science 2007; 315:1137-40. (Pubitemid 46328026)
    • (2007) Science , vol.315 , Issue.5815 , pp. 1137-1140
    • Kawahara, Y.1    Zinshteyn, B.2    Sethupathy, P.3    Iizasa, H.4    Hatzigeorgiou, A.G.5    Nishikura, K.6
  • 48
    • 33947719472 scopus 로고    scopus 로고
    • Hypothesis: RNA editing of microRNA target sites in humans?
    • Liang H, Landweber LF. Hypothesis: RNA editing of microRNA target sites in humans? Rna 2007.
    • (2007) Rna
    • Liang, H.1    Landweber, L.F.2
  • 49
    • 68949212914 scopus 로고    scopus 로고
    • Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: Functional role of a nuclear noncoding RNA
    • Chen LL, Carmichael GG. Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA. Molecular cell 2009; 35:467-78.
    • (2009) Molecular Cell , vol.35 , pp. 467-478
    • Chen, L.L.1    Carmichael, G.G.2
  • 51
    • 52949140596 scopus 로고    scopus 로고
    • C. elegans and H. sapiens mRNAs with edited 3′ UTRs are present on polysomes
    • Hundley HA, Krauchuk AA, Bass BL. C. elegans and H. sapiens mRNAs with edited 3′ UTRs are present on polysomes. Rna 2008; 14:2050-60.
    • (2008) Rna , vol.14 , pp. 2050-2060
    • Hundley, H.A.1    Krauchuk, A.A.2    Bass, B.L.3
  • 53
    • 69049093856 scopus 로고    scopus 로고
    • Widespread cleavage of A-to-I hyperediting substrates
    • Osenberg S, Dominissini D, Rechavi G, Eisenberg E. Widespread cleavage of A-to-I hyperediting substrates. Rna 2009; 15:1632-9.
    • (2009) Rna , vol.15 , pp. 1632-1639
    • Osenberg, S.1    Dominissini, D.2    Rechavi, G.3    Eisenberg, E.4
  • 54
    • 35648954007 scopus 로고    scopus 로고
    • Inosine-containing dsRNA binds a stress-granule-like complex and downregulates gene expression in trans
    • Scadden AD. Inosine-containing dsRNA binds a stress-granule-like complex and downregulates gene expression in trans. Molecular cell 2007; 28:491-500.
    • (2007) Molecular Cell , vol.28 , pp. 491-500
    • Scadden, A.D.1
  • 55
    • 45249118425 scopus 로고    scopus 로고
    • Gene expression is reduced in trans by inosine-containing dsRNA
    • Scadden AD. Gene expression is reduced in trans by inosine-containing dsRNA. Biochem Soc Trans 2008;36:534-6.
    • (2008) Biochem Soc Trans , vol.36 , pp. 534-536
    • Scadden, A.D.1
  • 57
    • 33749256772 scopus 로고    scopus 로고
    • RNA editing level in the mouse is determined by the genomic repeat repertoire
    • DOI 10.1261/rna.165106
    • Neeman Y, Levanon EY, Jantsch MF, Eisenberg E. RNA editing level in the mouse is determined by the genomic repeat repertoire. Rna 2006; 12:1802-9. (Pubitemid 44484253)
    • (2006) RNA , vol.12 , Issue.10 , pp. 1802-1809
    • Neeman, Y.1    Levanon, E.Y.2    Jantsch, M.F.3    Eisenberg, E.4
  • 58
    • 43049105810 scopus 로고    scopus 로고
    • RNA editing, DNA recoding and the evolution of human cognition
    • Mattick JS, Mehler MF. RNA editing, DNA recoding and the evolution of human cognition. Trends in neurosciences 2008; 31:227-33.
    • (2008) Trends in Neurosciences , vol.31 , pp. 227-233
    • Mattick, J.S.1    Mehler, M.F.2
  • 59
    • 70349524975 scopus 로고    scopus 로고
    • RNA editing: A driving force for adaptive evolution?
    • Gommans WM, Mullen SP, Maas S. RNA editing: a driving force for adaptive evolution? Bioessays 2009;31:1137-45.
    • (2009) Bioessays , vol.31 , pp. 1137-1145
    • Gommans, W.M.1    Mullen, S.P.2    Maas, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.