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Volumn 21, Issue 11, 2005, Pages 2590-2595

A bioinformatic screen for novel A-I RNA editing sites reveals recoding editing in BC10

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 20744459167     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti411     Document Type: Article
Times cited : (61)

References (36)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 12344300804 scopus 로고    scopus 로고
    • Widespread A-to-I RNA Editing of Alu-Containing mRNAs in the Human Transcriptome
    • e391
    • Athanasiadis,A. et al. (2004) Widespread A-to-I RNA Editing of Alu-Containing mRNAs in the Human Transcriptome. PLoS. Biol., 2, e391, 1-15.
    • (2004) PLoS. Biol. , vol.2 , pp. 1-15
    • Athanasiadis, A.1
  • 3
    • 0035997389 scopus 로고    scopus 로고
    • RNA editing by adenosine deaminases that act on RNA
    • Bass, B.L. (2002) RNA editing by adenosine deaminases that act on RNA. Annu. Rev. Biochem., 71, 817-846.
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 817-846
    • Bass, B.L.1
  • 5
    • 10944271858 scopus 로고    scopus 로고
    • A survey of RNA editing in human brain
    • Blow,M. et al. (2004) A survey of RNA editing in human brain. Genome Res., 14, 2379-2387.
    • (2004) Genome Res. , vol.14 , pp. 2379-2387
    • Blow, M.1
  • 6
    • 0027249595 scopus 로고
    • dbEST - Database for 'expressed sequence tags'
    • Boguski,M.S. et al. (1993) dbEST - database for 'expressed sequence tags'. Nat. Genet., 4, 332-333.
    • (1993) Nat. Genet. , vol.4 , pp. 332-333
    • Boguski, M.S.1
  • 7
    • 0037398368 scopus 로고    scopus 로고
    • LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA
    • Brudno,M. et al. (2003) LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Res., 13, 721-731.
    • (2003) Genome Res. , vol.13 , pp. 721-731
    • Brudno, M.1
  • 8
    • 0030916712 scopus 로고    scopus 로고
    • Regulation of serotonin-2C receptor G-protein coupling by RNA editing
    • Burns,C.M. et al. (1997) Regulation of serotonin-2C receptor G-protein coupling by RNA editing. Nature, 387, 303-308.
    • (1997) Nature , vol.387 , pp. 303-308
    • Burns, C.M.1
  • 9
    • 0037246585 scopus 로고    scopus 로고
    • Ensembl 2002: Accommodating comparative genomics
    • Clamp,M. et al. (2003) Ensembl 2002: accommodating comparative genomics. Nucleic Acids Res., 31, 38-42.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 38-42
    • Clamp, M.1
  • 10
    • 1042289731 scopus 로고    scopus 로고
    • Structure and sequence determinants required for the RNA editing of ADAR2 substrates
    • Dawson,T.R. et al. (2004) Structure and sequence determinants required for the RNA editing of ADAR2 substrates. J. Biol. Chem., 279, 4941-4951.
    • (2004) J. Biol. Chem. , vol.279 , pp. 4941-4951
    • Dawson, T.R.1
  • 11
    • 0000200738 scopus 로고    scopus 로고
    • Adenosine-to-inosine RNA editing: Substrates and consequences
    • Baos, B. (ed.) Oxford University Press, Oxford
    • Emeson,R.B. and Singh,M. (2000) Adenosine-to-inosine RNA editing: substrates and consequences. In Baos, B. (ed.) RNA Editing. Oxford University Press, Oxford, pp. 108-138.
    • (2000) RNA Editing , pp. 108-138
    • Emeson, R.B.1    Singh, M.2
  • 12
    • 0036533525 scopus 로고    scopus 로고
    • bc10: A novel human bladder cancer-associated protein with a conserved genomic structure downregulated in invasive cancer
    • Gromova,I. et al. (2002) bc10: A novel human bladder cancer-associated protein with a conserved genomic structure downregulated in invasive cancer. Int. J. Cancer, 98, 539-546.
    • (2002) Int. J. Cancer , vol.98 , pp. 539-546
    • Gromova, I.1
  • 13
    • 0029877296 scopus 로고    scopus 로고
    • Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences
    • Herb,A. et al. (1996) Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences. Proc. Natl Acad. Sci. USA, 93, 1875-1880.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 1875-1880
    • Herb, A.1
  • 14
    • 0027772363 scopus 로고
    • RNA editing of AMPA receptor subunit GluR-B: A base-paired intron-exon structure determines position and efficiency
    • Higuchi,M. et al. (1993) RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency. Cell, 75, 1361-1370.
    • (1993) Cell , vol.75 , pp. 1361-1370
    • Higuchi, M.1
  • 15
    • 0042528670 scopus 로고    scopus 로고
    • Nervous system targets of RNA editing identified by comparative genomics
    • Hoopengardner,B. et al. (2003) Nervous system targets of RNA editing identified by comparative genomics. Science, 301, 832-836.
    • (2003) Science , vol.301 , pp. 832-836
    • Hoopengardner, B.1
  • 16
    • 1542378930 scopus 로고    scopus 로고
    • Glutamate receptors: RNA editing and death of motor neurons
    • Kawahara,Y. et al. (2004) Glutamate receptors: RNA editing and death of motor neurons. Nature, 427, 801.
    • (2004) Nature , vol.427 , pp. 801
    • Kawahara, Y.1
  • 18
    • 0036089476 scopus 로고    scopus 로고
    • HUGE: A database for human large proteins identified in the Kazusa cDNA sequencing project
    • Kikuno,R. et al. (2002) HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project. Nucleic Acids Res., 30, 166-168.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 166-168
    • Kikuno, R.1
  • 19
    • 4644324088 scopus 로고    scopus 로고
    • Widespread RNA editing of embedded alu elements in the human transcriptome
    • Kim,D.D. et al. (2004) Widespread RNA editing of embedded alu elements in the human transcriptome. Genome Res., 14, 1719-1725.
    • (2004) Genome Res. , vol.14 , pp. 1719-1725
    • Kim, D.D.1
  • 20
    • 3543004084 scopus 로고    scopus 로고
    • Systematic identification of abundant A-to-I editing sites in the human transcriptome
    • Levanon,E.Y. et al. (2004) Systematic identification of abundant A-to-I editing sites in the human transcriptome. Nat. Biotechnol., 22, 1001-1005.
    • (2004) Nat. Biotechnol. , vol.22 , pp. 1001-1005
    • Levanon, E.Y.1
  • 21
    • 0037447334 scopus 로고    scopus 로고
    • The microRNAs of Caenorhabditis elegans
    • Lim,L.P. et al. (2003) The microRNAs of Caenorhabditis elegans. Genes Dev., 17, 991-1008.
    • (2003) Genes Dev. , vol.17 , pp. 991-1008
    • Lim, L.P.1
  • 22
    • 0028574351 scopus 로고
    • Control of kinetic properties of AMPA receptor channels by nuclear RNA editing
    • Lomeli,H. et al. (1994) Control of kinetic properties of AMPA receptor channels by nuclear RNA editing. Science, 266, 1709-1713.
    • (1994) Science , vol.266 , pp. 1709-1713
    • Lomeli, H.1
  • 23
    • 0042888576 scopus 로고    scopus 로고
    • Mutations of the RNA-specific adenosine deaminase gene (DSRAD) are involved in dyschromatosis symmetrica hereditaria
    • Miyamura,Y. et al. (2003) Mutations of the RNA-specific adenosine deaminase gene (DSRAD) are involved in dyschromatosis symmetrica hereditaria. Am. J. Hum. Genet., 73, 693-699.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 693-699
    • Miyamura, Y.1
  • 24
    • 0037062438 scopus 로고    scopus 로고
    • RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA
    • Morse,D.P. et al. (2002) RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA. Proc. Natl Acad. Sci. USA, 99, 7906-7911.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 7906-7911
    • Morse, D.P.1
  • 25
    • 0029164692 scopus 로고
    • Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: Evidence for two forms of the deaminase
    • Patterson,J.B. and Samuel,C.E. (1995) Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: evidence for two forms of the deaminase. Mol. Cell Biol., 15, 5376-5388.
    • (1995) Mol. Cell Biol. , vol.15 , pp. 5376-5388
    • Patterson, J.B.1    Samuel, C.E.2
  • 26
    • 0032481315 scopus 로고    scopus 로고
    • Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA
    • Paul,M.S. and Bass,B.L. (1998) Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. EMBO J., 17, 1120-1127.
    • (1998) EMBO J. , vol.17 , pp. 1120-1127
    • Paul, M.S.1    Bass, B.L.2
  • 27
    • 0034574386 scopus 로고    scopus 로고
    • Novel association of a diverse range of genes with renal cell carcinoma as identified by differential display
    • Rae,F.K. et al. (2000) Novel association of a diverse range of genes with renal cell carcinoma as identified by differential display. Int. J. Cancer, 88, 726-732.
    • (2000) Int. J. Cancer , vol.88 , pp. 726-732
    • Rae, F.K.1
  • 28
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice,P. et al. (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet., 16, 276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1
  • 29
    • 0033529064 scopus 로고    scopus 로고
    • Regulation of alternative splicing by RNA editing
    • Rueter,S.M. et al. (1999) Regulation of alternative splicing by RNA editing. Nature, 399, 75-80.
    • (1999) Nature , vol.399 , pp. 75-80
    • Rueter, S.M.1
  • 30
    • 0036703330 scopus 로고    scopus 로고
    • RNA editing by adenosine deaminases generates RNA and protein diversity
    • Schaub,M. and Keller,W. (2002) RNA editing by adenosine deaminases generates RNA and protein diversity. Biochimie, 84, 791-803.
    • (2002) Biochimie , vol.84 , pp. 791-803
    • Schaub, M.1    Keller, W.2
  • 31
    • 0025995296 scopus 로고
    • RNA editing in brain controls a determinant of ion flow in glutamate-gated channels
    • Sommer,B. et al. (1991) RNA editing in brain controls a determinant of ion flow in glutamate-gated channels. Cell, 67, 11-19.
    • (1991) Cell , vol.67 , pp. 11-19
    • Sommer, B.1
  • 32
    • 0012306020 scopus 로고    scopus 로고
    • A Drosophila full-length cDNA resource
    • RESEARCH0080
    • Stapleton,M. et al. (2002) A Drosophila full-length cDNA resource. Genome Biol., 3, RESEARCH0080, 1-8.
    • (2002) Genome Biol. , vol.3 , pp. 1-8
    • Stapleton, M.1
  • 33
    • 0037031853 scopus 로고    scopus 로고
    • Two novel transcripts for human endothelin B receptor produced by RNA editing/alternative splicing from a single gene
    • Tanoue,A. et al. (2002) Two novel transcripts for human endothelin B receptor produced by RNA editing/alternative splicing from a single gene. J. Biol. Chem., 277, 33205-33212.
    • (2002) J. Biol. Chem. , vol.277 , pp. 33205-33212
    • Tanoue, A.1
  • 34
    • 0029159759 scopus 로고
    • Apolipoprotein B mRNA-editing protein induces hepatocellular carcinoma and dysplasia in transgenic animals
    • Yamanaka,S. et al. (1995) Apolipoprotein B mRNA-editing protein induces hepatocellular carcinoma and dysplasia in transgenic animals. Proc. Natl Acad. Sci. USA, 92, 8483-8487.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 8483-8487
    • Yamanaka, S.1
  • 35
    • 0031048641 scopus 로고    scopus 로고
    • A novel translational repressor mRNA is edited extensively in livers containing tumors caused by the transgene expression of the apoB mRNA-editing enzyme
    • Yamanaka,S. et al. (1997) A novel translational repressor mRNA is edited extensively in livers containing tumors caused by the transgene expression of the apoB mRNA-editing enzyme. Genes Dev., 11, 321-333.
    • (1997) Genes Dev. , vol.11 , pp. 321-333
    • Yamanaka, S.1
  • 36
    • 0037616171 scopus 로고    scopus 로고
    • Widespread inosine-containing mRNA in lymphocytes regulated by ADAR1 in response to inflammation
    • Yang,J.H. et al. (2003) Widespread inosine-containing mRNA in lymphocytes regulated by ADAR1 in response to inflammation. Immunology, 109, 15-23.
    • (2003) Immunology , vol.109 , pp. 15-23
    • Yang, J.H.1


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