메뉴 건너뛰기




Volumn 7, Issue 5, 2010, Pages 324-331

Computational analysis of interactions of argadin with chitotriosidase, chitinase and acidic mammalian chitinase: Hints for specific inhibitor design

Author keywords

Acidic mammalian chitinase; Argadin; Asthma; Chitotriosidase; Molecular mechanics calculations

Indexed keywords

ARGADIN; CHITINASE; CHITINASE INHIBITOR; CHITOTRIOSIDASE; ENZYME INHIBITOR; UNCLASSIFIED DRUG;

EID: 77953693079     PISSN: 15701808     EISSN: None     Source Type: Journal    
DOI: 10.2174/157018010791163514     Document Type: Article
Times cited : (3)

References (49)
  • 1
    • 0034522650 scopus 로고    scopus 로고
    • Regulation of t helper type 2 cell immunity by interleukin-4 and interleukin-13
    • McKenzie, A. N. Regulation of t helper type 2 cell immunity by interleukin-4 and interleukin-13. Pharmacol. Ther. 2000, 88, 143-151.
    • (2000) Pharmacol. Ther. , vol.88 , pp. 143-151
    • McKenzie, A.N.1
  • 3
    • 24644465726 scopus 로고    scopus 로고
    • Chitinases and chitinase-like proteins in T(H)2 inflammation and asthma
    • Elias, J. A.; Homer, R. J.; Hamid, Q.; Lee, C. G. Chitinases and chitinase-like proteins in T(H)2 inflammation and asthma. J. Allergy Clin. Immunol., 2005, 116, 497-500.
    • (2005) J. Allergy Clin. Immunol. , vol.116 , pp. 497-500
    • Elias, J.A.1    Homer, R.J.2    Hamid, Q.3    Lee, C.G.4
  • 4
    • 2942668626 scopus 로고    scopus 로고
    • Acidic mammalian chitinase in asthmatic Th2 inflammation and IL-13 pathway activation
    • Zhu, Z.; Zheng, T.; Homer, R. J.; Kim, Y. K.; Chen, N. Y.; Cohn, L.; Hamid, Q.; Elias, J. A. Acidic mammalian chitinase in asthmatic Th2 inflammation and IL-13 pathway activation. Science, 2004, 304, 1678-1682.
    • (2004) Science , vol.304 , pp. 1678-1682
    • Zhu, Z.1    Zheng, T.2    Homer, R.J.3    Kim, Y.K.4    Chen, N.Y.5    Cohn, L.6    Hamid, Q.7    Elias, J.A.8
  • 6
    • 0028004384 scopus 로고
    • Antibiotics that inhibit fungal cell wall development
    • Debono, M.; Gordee, R.S. Antibiotics that inhibit fungal cell wall development. Annu. Rev. Microbiol., 1994, 48, 471-497.
    • (1994) Annu. Rev. Microbiol. , vol.48 , pp. 471-497
    • Debono, M.1    Gordee, R.S.2
  • 8
    • 0027411280 scopus 로고
    • Cytochemical localization of carbohydrate residues in microfilariae of Wuchereria bancrofti and Brugia malayi
    • Araujo, A.C.; Souto-Padron, T.; de Souza, W. Cytochemical localization of carbohydrate residues in microfilariae of Wuchereria bancrofti and Brugia malayi. J. Histochem. Cytochem., 1993, 41, 571-578.
    • (1993) J. Histochem. Cytochem. , vol.41 , pp. 571-578
    • Araujo, A.C.1    Souto-Padron, T.2    de Souza, W.3
  • 9
    • 3142693436 scopus 로고    scopus 로고
    • Cellular expression of murine Ym1 and Ym2, chitinase family proteins, as revealed by in situ hybridization and immunohisto-chemistry
    • Nio, J.; Fujimoto, W.; Konno, A.; Kon, Y.; Owhashi, M.; Iwanaga, T. Cellular expression of murine Ym1 and Ym2, chitinase family proteins, as revealed by in situ hybridization and immunohisto-chemistry. Histochem. Cell Biol., 2004, 121, 473-482.
    • (2004) Histochem. Cell Biol. , vol.121 , pp. 473-482
    • Nio, J.1    Fujimoto, W.2    Konno, A.3    Kon, Y.4    Owhashi, M.5    Iwanaga, T.6
  • 10
    • 0029924794 scopus 로고    scopus 로고
    • Serum ykl-40 levels in healthy children and adults. Comparison with serum and synovial fluid levels of ykl-40 in patients with osteoarthritis or trauma of the knee joint
    • Johansen, J.S.; Hvolris, J.; Hansen, M.; Backer, V.; Lorenzen, I.; Price, P.A. Serum ykl-40 levels in healthy children and adults. Comparison with serum and synovial fluid levels of ykl-40 in patients with osteoarthritis or trauma of the knee joint. Br. J. Rheumatol., 1996, 35, 553-559.
    • (1996) Br. J. Rheumatol. , vol.35 , pp. 553-559
    • Johansen, J.S.1    Hvolris, J.2    Hansen, M.3    Backer, V.4    Lorenzen, I.5    Price, P.A.6
  • 11
    • 0028911536 scopus 로고
    • Purification and characterization of human chitotriosidase, a novel member of the chitinase family of proteins
    • Renkema, G.H.; Boot, R.G.; Muijsers, A.O.; Donker-Koopman, W.E.; Aerts, J.M. Purification and characterization of human chitotriosidase, a novel member of the chitinase family of proteins. J. Biol. Chem., 1995, 270, 2198-2202.
    • (1995) J. Biol. Chem. , vol.270 , pp. 2198-2202
    • Renkema, G.H.1    Boot, R.G.2    Muijsers, A.O.3    Donker-Koopman, W.E.4    Aerts, J.M.5
  • 12
    • 0032975495 scopus 로고    scopus 로고
    • Strong induction of members of the chitinase family of proteins in atherosclerosis: Chitotriosidase and human cartilage gp-39 expressed in lesion macro-phages
    • Boot, R.G.; van Achterberg, T.A.; van Aken, B.E.; Renkema, G.H.; Jacobs, M.J.; Aerts, J.M.; de Vries, C.J. Strong induction of members of the chitinase family of proteins in atherosclerosis: Chitotriosidase and human cartilage gp-39 expressed in lesion macro-phages. Arterioscler. Thromb. Vasc. Biol., 1999, 19, 687-694.
    • (1999) Arterioscler. Thromb. Vasc. Biol. , vol.19 , pp. 687-694
    • Boot, R.G.1    van Achterberg, T.A.2    van Aken, B.E.3    Renkema, G.H.4    Jacobs, M.J.5    Aerts, J.M.6    de Vries, C.J.7
  • 13
    • 0028220472 scopus 로고
    • Marked elevation of plasma chitotriosidase activity. A novel hallmark of gaucher disease
    • Hollak, C.E.; van Weely, S.; van Oers, M.H.; Aerts, J.M. Marked elevation of plasma chitotriosidase activity. A novel hallmark of gaucher disease. J. Clin. Invest., 1994, 93, 1288-1292.
    • (1994) J. Clin. Invest. , vol.93 , pp. 1288-1292
    • Hollak, C.E.1    van Weely, S.2    van Oers, M.H.3    Aerts, J.M.4
  • 15
    • 67349262404 scopus 로고    scopus 로고
    • Increased chitotriosidase activity in serum of leprosy patients: Association with bacillary leprosy
    • Iyer, A.; van Eijk, M.; Silva, E.; Hatta, M.; Faber, W.; Aerts, J.M.; Das, P.K. Increased chitotriosidase activity in serum of leprosy patients: association with bacillary leprosy. Clin. Immunol., 2009, 131, 501-509.
    • (2009) Clin. Immunol. , vol.131 , pp. 501-509
    • Iyer, A.1    van Eijk, M.2    Silva, E.3    Hatta, M.4    Faber, W.5    Aerts, J.M.6    Das, P.K.7
  • 17
    • 4544301221 scopus 로고    scopus 로고
    • Acidic mammalian chitinase--a potential target for asthma therapy. Trends Pharmacol
    • Donnelly, L.E.; Barnes, P.J. Acidic mammalian chitinase--a potential target for asthma therapy. Trends Pharmacol. Sci., 2004, 25, 509-511.
    • (2004) Sci , vol.25 , pp. 509-511
    • Donnelly, L.E.1    Barnes, P.J.2
  • 18
    • 33746177512 scopus 로고    scopus 로고
    • Increased expression of acidic mammalian chitinase in chronic rhinosinusitis with nasal polyps
    • Ramanathan, M., Jr.; Lee, W.K.; Lane, A.P. Increased expression of acidic mammalian chitinase in chronic rhinosinusitis with nasal polyps. Am. J. Rhinol., 2006, 20, 330-335.
    • (2006) Am. J. Rhinol. , vol.20 , pp. 330-335
    • Ramanathan Jr., M.1    Lee, W.K.2    Lane, A.P.3
  • 20
    • 74549157196 scopus 로고    scopus 로고
    • Inhibition of acidic mammalian chitinase by RNA interference suppresses ovalbumin-sensitized allergic asthma
    • Yang, C.J.; Liu, Y.K.; Liu, C.L.; Shen, C.N.; Kuo, M.L.; Su, C.C.; Tseng, C.P.; Yen, T.C.; Shen, C.R. Inhibition of acidic mammalian chitinase by RNA interference suppresses ovalbumin-sensitized allergic asthma. Hum. Gene Ther., 2009, 20, 1597-1606.
    • (2009) Hum. Gene Ther , vol.20 , pp. 1597-1606
    • Yang, C.J.1    Liu, Y.K.2    Liu, C.L.3    Shen, C.N.4    Kuo, M.L.5    Su, C.C.6    Tseng, C.P.7    Yen, T.C.8    Shen, C.R.9
  • 21
    • 40149089819 scopus 로고    scopus 로고
    • A single histidine residue modulates enzymatic activity in acidic mammalian chitinase
    • Bussink, A.P.; Vreede, J.; Aerts, J.M.; Boot, R.G. A single histidine residue modulates enzymatic activity in acidic mammalian chitinase. FEBS Lett., 2008 582, 931-935.
    • (2008) FEBS Lett , vol.582 , pp. 931-935
    • Bussink, A.P.1    Vreede, J.2    Aerts, J.M.3    Boot, R.G.4
  • 22
    • 12344317078 scopus 로고    scopus 로고
    • Specificity and affinity of natural product cyclopentapeptide inhibitors against A. fumigatus, human, and bacterial chitinases
    • Rao, F.V.; Houston, D.R.; Boot, R.G.; Aerts, J.M.; Hodkinson, M.; Adams, D.J.; Shiomi, K.; Omura, S.; van Aalten, D.M. Specificity and affinity of natural product cyclopentapeptide inhibitors against A. fumigatus, human, and bacterial chitinases. Chem. Biol., 2005, 12, 65-76.
    • (2005) Chem. Biol , vol.12 , pp. 65-76
    • Rao, F.V.1    Houston, D.R.2    Boot, R.G.3    Aerts, J.M.4    Hodkinson, M.5    Adams, D.J.6    Shiomi, K.7    Omura, S.8    van Aalten, D.M.9
  • 28
    • 84988098098 scopus 로고
    • Atomic charges derived from electrostatic potentials: A detailed study
    • Chirlian, L.E.; Francl, M.M. Atomic charges derived from electrostatic potentials: A detailed study. J. Comput. Chem., 1987, 8, 894-905.
    • (1987) J. Comput. Chem. , vol.8 , pp. 894-905
    • Chirlian, L.E.1    Francl, M.M.2
  • 29
    • 36949003692 scopus 로고    scopus 로고
    • Computer aided drug design approaches to develop cyclooxy-genase based novel anti-inflammatory and anti-cancer drugs
    • Reddy, R.N.; Mutyala, R.; Aparoy, P.; Reddanna, P.; Reddy, M.R. Computer aided drug design approaches to develop cyclooxy-genase based novel anti-inflammatory and anti-cancer drugs. Curr. Pharm. Des., 2007, 13, 3505-3517.
    • (2007) Curr. Pharm. Des. , vol.13 , pp. 3505-3517
    • Reddy, R.N.1    Mutyala, R.2    Aparoy, P.3    Reddanna, P.4    Reddy, M.R.5
  • 30
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • Jones, G.; Willett, P.; Glen, R.C.; Leach, A.R.; Taylor, R. Development and validation of a genetic algorithm for flexible docking. J. Mol. Biol., 1997, 267, 727-748.
    • (1997) J. Mol. Biol. , vol.267 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 31
    • 0026438932 scopus 로고
    • Molecular mechanics analysis of inhibitor binding to HIV-1 protease
    • Sansom, C.E.; Wu, J.; Weber, I.T. Molecular mechanics analysis of inhibitor binding to HIV-1 protease. Protein Eng., 1992, 5, 659-667.
    • (1992) Protein Eng. , vol.5 , pp. 659-667
    • Sansom, C.E.1    Wu, J.2    Weber, I.T.3
  • 34
    • 1542739327 scopus 로고    scopus 로고
    • In: Kubinyi, H.; Folkers, G.; Martin, Y.C.; Eds, Kluwer Academic Publishers, New York, NY
    • [34] Reddy, M.R.; Viswanadhan, V. N.; Erion, M.D. In: Kubinyi, H.; Folkers, G.; Martin, Y.C.; Eds. 3D QSAR in drug design,. Kluwer Academic Publishers, New York, NY, 1998, vol. 2, p. 85.
    • (1998) 3D QSAR In Drug Design , vol.2 , pp. 85
    • Reddy, M.R.1    Viswanadhan, V.N.2    Erion, M.D.3
  • 36
    • 14044278780 scopus 로고    scopus 로고
    • Computer-aided drug design strategies used in the discovery of fructose 1, 6-bisphosphatase inhibitors
    • Reddy, M.R.; Erion, M.D. Computer-aided drug design strategies used in the discovery of fructose 1, 6-bisphosphatase inhibitors. Curr. Pharm. Des., 2005, 11, 283-294.
    • (2005) Curr. Pharm. Des , vol.11 , pp. 283-294
    • Reddy, M.R.1    Erion, M.D.2
  • 37
    • 0034801307 scopus 로고    scopus 로고
    • Calculation of relative binding free energy differences for fructose 1,6-bisphosphatase inhibitors using the thermodynamic cycle perturbation approach
    • Reddy, M.R.; Erion, M.D. Calculation of relative binding free energy differences for fructose 1,6-bisphosphatase inhibitors using the thermodynamic cycle perturbation approach. J. Am. Chem. Soc., 2001, 123, 6246-6252.
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 6246-6252
    • Reddy, M.R.1    Erion, M.D.2
  • 38
    • 34147100340 scopus 로고    scopus 로고
    • Accelrys, Inc., San Diego, USA
    • Ludi score user guide, Accelrys, Inc., San Diego, USA, 1999.
    • (1999) Ludi Score User Guide
  • 40
    • 0035949643 scopus 로고    scopus 로고
    • High resolution structural analyses of mutant chitinase A complexes with substrates provide new insight into the mechanism of catalysis
    • Papanikolau, Y.; Prag, G.; Tavlas, G.; Vorgias, C.E.; Oppenheim, A.B.; Petratos, K. High resolution structural analyses of mutant chitinase A complexes with substrates provide new insight into the mechanism of catalysis. Biochemistry, 2001, 40, 11338-11343.
    • (2001) Biochemistry , vol.40 , pp. 11338-11343
    • Papanikolau, Y.1    Prag, G.2    Tavlas, G.3    Vorgias, C.E.4    Oppenheim, A.B.5    Petratos, K.6
  • 42
    • 0028774705 scopus 로고
    • Crystal structures of hevamine, a plant defence protein with chitinase and lysozyme activity, and its complex with an inhibitor
    • Terwisscha van Scheltinga, A.C.; Kalk, K.H.; Beintema, J.J.; Dijkstra, B.W. Crystal structures of hevamine, a plant defence protein with chitinase and lysozyme activity, and its complex with an inhibitor. Structure, 1994, 2, 1181-1189.
    • (1994) Structure , vol.2 , pp. 1181-1189
    • Terwisscha van Scheltinga, A.C.1    Kalk, K.H.2    Beintema, J.J.3    Dijkstra, B.W.4
  • 46
    • 63249096521 scopus 로고    scopus 로고
    • Analysis of a three-dimensional structure of human acidic mammalian chitinase obtained by homology modeling and ligand binding studies
    • Zhao, Y.S.; Zheng, Q.C.; Zhang, H.X.; Chu, H.Y.; Sun, C.C. Analysis of a three-dimensional structure of human acidic mammalian chitinase obtained by homology modeling and ligand binding studies. J. Mol. Model, 2009, 15, 499-505.
    • (2009) J. Mol. Model , vol.15 , pp. 499-505
    • Zhao, Y.S.1    Zheng, Q.C.2    Zhang, H.X.3    Chu, H.Y.4    Sun, C.C.5
  • 48
    • 69749119778 scopus 로고    scopus 로고
    • The chitinase and chitinase-like proteins: A review of genetic and functional studies in asthma and immune-mediated diseases
    • Ober, C.; Chupp, G.L. The chitinase and chitinase-like proteins: a review of genetic and functional studies in asthma and immune-mediated diseases. Curr. Opin. Allergy Clin. Immunol., 2009, 9, 401-408.
    • (2009) Curr. Opin. Allergy Clin. Immunol. , vol.9 , pp. 401-408
    • Ober, C.1    Chupp, G.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.