메뉴 건너뛰기




Volumn 8, Issue 3, 2010, Pages 607-625

SNPS in the HIV-1 tata box and the aids pandemic

Author keywords

HIV 1; Prediction; SNP; TATA binding protein (TBP); TATA box; TBP TATA affinity

Indexed keywords

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 77953679484     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720010004677     Document Type: Conference Paper
Times cited : (14)

References (60)
  • 1
    • 28144457051 scopus 로고    scopus 로고
    • Genomic diversity of human immunodeficiency viruses
    • Gupta RM, Sahni AK, Jena J, Nema SK, Genomic diversity of human immunodeficiency viruses, MJAFI 61:267-270, 2005.
    • (2005) MJAFI , vol.61 , pp. 267-270
    • Gupta, R.M.1    Sahni, A.K.2    Jena, J.3    Nema, S.K.4
  • 3
    • 36749083560 scopus 로고    scopus 로고
    • When HIV spread afar
    • Holmes ES, When HIV spread afar, Proc Natl Acad Sci USA, 104:18351-18352, 2007.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 18351-18352
    • Holmes, E.S.1
  • 4
    • 77953659597 scopus 로고    scopus 로고
    • Friedman H, Specter S, Bendinelli M (eds), Springer Science+Business Media, New York
    • In vivo Models of HIV Disease and Control, Friedman H, Specter S, Bendinelli M (eds), Springer Science+Business Media, New York, 2006.
    • (2006) Vivo Models of HIV Disease and Control
  • 6
    • 33745059199 scopus 로고    scopus 로고
    • Chimpanzee reservoirs of pandemic and nonpandemic HIV-1
    • Keele BF, Van Heuverswyn F, Li Y et al., Chimpanzee reservoirs of pandemic and nonpandemic HIV-1, Science 313:523-526, 2006.
    • (2006) Science , vol.313 , pp. 523-526
    • Keele, B.F.1    Van Heuverswyn, F.2    Li, Y.3
  • 7
    • 0034625771 scopus 로고    scopus 로고
    • Timing the ancestor of the HIV-1 pandemic strains
    • Korber B, Muldoon M, Theiler J et al., Timing the ancestor of the HIV-1 pandemic strains, Science 288:1789-1796, 2000.
    • (2000) Science , vol.288 , pp. 1789-1796
    • Korber, B.1    Muldoon, M.2    Theiler, J.3
  • 8
    • 36749031231 scopus 로고    scopus 로고
    • The emergence of HIV/AIDS in the Americas and beyond
    • Gilbert MT, Rambaut A, Wlasiuk G et al., The emergence of HIV/AIDS in the Americas and beyond, Proc Natl Acad Sci USA 104:18566-18570, 2007.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 18566-18570
    • Gilbert, M.T.1    Rambaut, A.2    Wlasiuk, G.3
  • 9
    • 33646109306 scopus 로고    scopus 로고
    • Worldwide molecular epidemiology of HIV
    • Requejo HI, Worldwide molecular epidemiology of HIV, Rev Saude Publica 40: 331-345, 2006.
    • (2006) Rev Saude Publica , vol.40 , pp. 331-345
    • Requejo, H.I.1
  • 10
    • 33745621323 scopus 로고    scopus 로고
    • Global epidemiology of HIV
    • McCutchan FE, Global epidemiology of HIV, J Med Virol 78:S7-S12, 2006.
    • (2006) J Med Virol , vol.78
    • McCutchan, F.E.1
  • 11
    • 33750253231 scopus 로고    scopus 로고
    • Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004
    • Hemelaara J, Gouws E, Ghys PD, Osmanov S, Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004, AIDS 20:W13-W23, 2006.
    • (2006) AIDS , vol.20
    • Hemelaara, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 12
    • 77953660688 scopus 로고    scopus 로고
    • Epidemics. Vusovskaya. Kniga, Moscow Russia, in Russian
    • Supotnitskiy VV, Micro-Organisms, Toxins, and Epidemics. Vusovskaya. Kniga, Moscow, Russia, 2005 (in Russian).
    • (2005) Micro-Organisms Toxins
    • Supotnitskiy, V.V.1
  • 13
    • 3042826110 scopus 로고    scopus 로고
    • Recombinant viruses and early global HIV-1 epidemic
    • Kalish ML, Robbins KE, Pieniazek D et al., Recombinant viruses and early global HIV-1 epidemic, Emerg Infect Dis 10:1227-1234, 2004.
    • (2004) Emerg Infect Dis , vol.10 , pp. 1227-1234
    • Kalish, M.L.1    Robbins, K.E.2    Pieniazek, D.3
  • 14
    • 0026794243 scopus 로고
    • Contribution of the TATA motif to Tat-mediated transcriptional activation of human immunodeficiency virus gene expression
    • Olsen HS, Rosen CA, Contribution of the TATA motif to Tat-mediated transcriptional activation of human immunodeficiency virus gene expression, J Virol 66:5594-5597, 1992.
    • (1992) J Virol , vol.66 , pp. 5594-5597
    • Olsen, H.S.1    Rosen, C.A.2
  • 15
    • 0029949812 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 long terminal repeat variants from 42 patients representing all stages of infection display a wide range of sequence polymorphism and transcription activity
    • Estable MC, Bell B, Merzouki A, Montaner JS, O'Shaughnessy MV, Sadowski IJ, Human immunodeficiency virus type 1 long terminal repeat variants from 42 patients representing all stages of infection display a wide range of sequence polymorphism and transcription activity, J Virol 70:4053-4062, 1996.
    • (1996) J Virol , vol.70 , pp. 4053-4062
    • Estable, M.C.1    Bell, B.2    Merzouki, A.3    Montaner, J.S.4    O'Shaughnessy, M.V.5    Sadowski, I.J.6
  • 16
    • 0023176085 scopus 로고
    • An inducible transcription factor activates expression of human immunodeficiency virus in T cells
    • Nabel G, Baltimore D, An inducible transcription factor activates expression of human immunodeficiency virus in T cells, Nature 326:711-717, 1987.
    • (1987) Nature , vol.326 , pp. 711-717
    • Nabel, G.1    Baltimore, D.2
  • 17
    • 0030974504 scopus 로고    scopus 로고
    • Genotypic and phenotypic characterization of long terminal repeat sequences from long-term survivors of human immunodeficiency virus type 1 infection
    • Zhang L, Huang Y, Yuan H, Chen BK, Ip J, Ho DD, Genotypic and phenotypic characterization of long terminal repeat sequences from long-term survivors of human immunodeficiency virus type 1 infection, J Virol 71:5608-5613, 1997. (Pubitemid 27258240)
    • (1997) Journal of Virology , vol.71 , Issue.7 , pp. 5608-5613
    • Zhang, L.1    Huang, Y.2    Yuan, H.3    Chen, B.K.4    Ip, J.5    Ho, D.D.6
  • 18
    • 0028053873 scopus 로고
    • Role of flanking e box motifs in human immunodeficiency virus type 1 TATA element function
    • Ou SH, Garcia-Martínez LF, Paulssen EJ, Gaynor RB, Role of flanking E box motifs in human immunodeficiency virus type 1 TATA element function, J Virol 68: 7188-7199, 1994.
    • (1994) J Virol , vol.68 , pp. 7188-7199
    • Ou, S.H.1    Garcia-Martínez, L.F.2    Paulssen, E.J.3    Gaynor, R.B.4
  • 19
    • 27944487541 scopus 로고    scopus 로고
    • Tat gets the "green" light on transcription initiation
    • Brady J, Kashanchi F, Tat gets the "green" light on transcription initiation, Retrovirology 2:69, 2005.
    • (2005) Retrovirology , vol.2 , pp. 69
    • Brady, J.1    Kashanchi, F.2
  • 20
    • 15744404289 scopus 로고    scopus 로고
    • HIV-1 Tat stimulates transcription complex assembly through recruitment of TBP in the absence of TAFs
    • Raha T, Cheng SW, Green MR, HIV-1 Tat stimulates transcription complex assembly through recruitment of TBP in the absence of TAFs, PLoS Biol 3(2):e44, 2005.
    • (2005) PLoS Biol , vol.3 , Issue.2
    • Raha, T.1    Cheng, S.W.2    Green, M.R.3
  • 21
    • 0032558678 scopus 로고    scopus 로고
    • Recruitment of the TATA-binding protein to the HIV-1 promoter is a limiting step for Tat transactivation
    • Majello B, Napolitano G, Lania L, Recruitment of the TATA-binding protein to the HIV-1 promoter is a limiting step for Tat transactivation, AIDS 12(15):1957-1964, 1998.
    • (1998) AIDS , vol.12 , Issue.15 , pp. 1957-1964
    • Majello, B.1    Napolitano, G.2    Lania, L.3
  • 22
    • 0027406964 scopus 로고
    • Molecular cloning and functional analysis of Drosophila TAF110 reveal properties expected of coactivators
    • Hoey T, Weinzierl RO, Gill G, et al., Molecular cloning and functional analysis of Drosophila TAF110 reveal properties expected of coactivators, Cell 72:247-260, 1993.
    • (1993) Cell , vol.72 , pp. 247-260
    • Hoey, T.1    Weinzierl, R.O.2    Gill, G.3
  • 23
    • 0028036190 scopus 로고
    • A glutamine-rich hydrophobic patch in transcription factor Sp1 contacts the dTAFII110 component of the Drosophila TFIID complex and mediates transcriptional activation
    • Gill G, Pascal E, Tseng ZH, Tjian R, A glutamine-rich hydrophobic patch in transcription factor Sp1 contacts the dTAFII110 component of the Drosophila TFIID complex and mediates transcriptional activation, Proc Natl Acad Sci USA 91:192-196, 1994.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 192-196
    • Gill, G.1    Pascal, E.2    Zh, T.3    Tjian, R.4
  • 24
    • 0037072781 scopus 로고    scopus 로고
    • HIV-1 Tat interaction with RNA polymerase II C-terminal domain (CTD) and a dynamic association with CDK2 induce CTD phosphorylation and transcription from HIV-1 promoter
    • Deng L, Ammosova T, Pumfery A, Kashanchi F, Nekhai S, HIV-1 Tat interaction with RNA polymerase II C-terminal domain (CTD) and a dynamic association with CDK2 induce CTD phosphorylation and transcription from HIV-1 promoter, J Biol Chem 277:33922-33929, 2002.
    • (2002) J Biol Chem , vol.277 , pp. 33922-33929
    • Deng, L.1    Ammosova, T.2    Pumfery, A.3    Kashanchi, F.4    Nekhai, S.5
  • 25
    • 0347624643 scopus 로고    scopus 로고
    • Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter
    • Lusic M, Marcello A, Cereseto A, Giacca M, Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter, EMBO J 22: 6550-6561, 2003.
    • (2003) EMBO J , vol.22 , pp. 6550-6561
    • Lusic, M.1    Marcello, A.2    Cereseto, A.3    Giacca, M.4
  • 28
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    • Darling AC, Mau B, Blattner F, Perna NT, Mauve: multiple alignment of conserved genomic sequence with rearrangements, Genome Res 14:1394-1403, 2004.
    • (2004) Genome Res , vol.14 , pp. 1394-1403
    • Darling, A.C.1    Mau, B.2    Blattner, F.3    Perna, N.T.4
  • 29
    • 0031595932 scopus 로고    scopus 로고
    • Dysregulation through the NF-kappaB enhancer and TATA box of the human immunodeficiency virus type 1 subtype e promoter
    • Montano MA, Nixon CP, Essex M, Dysregulation through the NF-kappaB enhancer and TATA box of the human immunodeficiency virus type 1 subtype E promoter, J Virol 72:8446-8452, 1998.
    • (1998) J Virol , vol.72 , pp. 8446-8452
    • Ma, M.1    Nixon, C.P.2    Essex, M.3
  • 32
    • 0347890376 scopus 로고
    • Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences
    • Hahn S, Buratowski S, Sharp PA, Guarente L, Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences, Proc Natl Acad Sci USA 86:5718-5722, 1989.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 5718-5722
    • Hahn, S.1    Buratowski, S.2    Sharp, P.A.3    Guarente, L.4
  • 33
    • 0029014933 scopus 로고
    • Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA
    • Coleman RA, Pugh BF, Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA, J Biol Chem 270:13850-13859, 1995.
    • (1995) J Biol Chem , vol.270 , pp. 13850-13859
    • Coleman, R.A.1    Pugh, B.F.2
  • 34
    • 0025278259 scopus 로고
    • Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences
    • Bucher P, Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences, J Mol Biol 212:563-578, 1990.
    • (1990) J Mol Biol , vol.212 , pp. 563-578
    • Bucher, P.1
  • 36
    • 0037040899 scopus 로고    scopus 로고
    • Comparison of TATA-binding protein recognition of a variant and consensus DNA promoters
    • Powell R, Parkhurst K, Parkhurst L, Comparison of TATA-binding protein recognition of a variant and consensus DNA promoters, J Biol Chem 277:7776-7784, 2002.
    • (2002) J Biol Chem , vol.277 , pp. 7776-7784
    • Powell, R.1    Parkhurst, K.2    Parkhurst, L.3
  • 38
    • 85030371098 scopus 로고
    • IUPAC-IUB commission on biochemical nomenclature (CBN)
    • IUPAC-IUB commission on biochemical nomenclature (CBN), J Mol Biol 55: 299-310, 1971.
    • (1971) J Mol Biol , vol.55 , pp. 299-310
  • 39
    • 0030448031 scopus 로고    scopus 로고
    • Combining structural analysis of DNA with search routines for the detection of transcription regulatory elements
    • Karas H, Knüppel R, Schulz W, Sklenar H, Wingender E, Combining structural analysis of DNA with search routines for the detection of transcription regulatory elements, Comput Appl Biosci 12(5):441-446, 1996.
    • (1996) Comput Appl Biosci , vol.12 , Issue.5 , pp. 441-446
    • Karas, H.1    Knüppel, R.2    Schulz, W.3    Sklenar H4    Wingender, E.5
  • 40
    • 64349107263 scopus 로고    scopus 로고
    • The TATA-binding protein core domain in solution variably bends TATA sequences via a three-step binding mechanism
    • Delgadillo RF,Whittington JE, Parkhurst LK, Parkhurst LJ, The TATA-binding protein core domain in solution variably bends TATA sequences via a three-step binding mechanism, Biochemistry 48:1801-1809, 2009.
    • (2009) Biochemistry , vol.48 , pp. 1801-1809
    • Delgadillo, R.F.1    Whittington, J.E.2    Parkhurst, L.K.3    Parkhurst, L.J.4
  • 43
    • 33744952170 scopus 로고    scopus 로고
    • Transcriptional repression of human immunodeficiency virus type 1 by AP-4
    • DOI 10.1074/jbc.M511773200
    • Imai K, Okamoto T, Transcriptional repression of human immunodeficiency virus type 1 by AP-4, J Biol Chem 281:12495-12505, 2006. (Pubitemid 43855336)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.18 , pp. 12495-12505
    • Imai, K.1    Okamoto, T.2
  • 44
    • 0020433105 scopus 로고
    • The yeast his3 promoter contains at least two distinct elements
    • Struhl K, The yeast his3 promoter contains at least two distinct elements, Proc Natl Acad Sci USA 79:7385-7389 (1982).
    • (1982) Proc Natl Acad Sci USA , vol.79 , pp. 7385-7389
    • Struhl, K.1
  • 45
    • 0029185897 scopus 로고
    • Etude d'une population d'origine tropicale, VIH positive, dans un centre de ŕefugíes en France
    • in French
    • Bouŕee P, Lamour P, Bisaro F, Didier E, Etude d'une population d'origine tropicale, VIH positive, dans un centre de ŕefugíes en France, Bull Soc Pathol Exot 88:24-28, 1995 (in French).
    • (1995) Bull Soc Pathol Exot , vol.88 , pp. 24-28
    • Bouŕee, P.1    Lamour, P.2    Bisaro, F.3    Didier, E.4
  • 46
    • 41849127131 scopus 로고    scopus 로고
    • The spread, treatment, and prevention of HIV-1: Evolution of a global pandemic
    • Cohen MS, Hellmann N, Levy JA, DeCock K, Lange J, The spread, treatment, and prevention of HIV-1: evolution of a global pandemic, J Clin Invest 118:1244-1254, 2008.
    • (2008) J Clin Invest , vol.118 , pp. 1244-1254
    • Cohen, M.S.1    Hellmann, N.2    Levy, J.A.3    Decock, K.4    Lange, J.5
  • 47
    • 38849131389 scopus 로고    scopus 로고
    • Emerging trends of HIV epidemiology in Asia
    • Lau KA, Wang B, Saksena NK, Emerging trends of HIV epidemiology in Asia, AIDS Rev 9:218-229, 2007.
    • (2007) AIDS Rev , vol.9 , pp. 218-229
    • Lau, K.A.1    Wang, B.2    Saksena, N.K.3
  • 48
    • 0016669094 scopus 로고
    • Evolution in two levels in humans and chimpanzees
    • King MC, Wilson AC, Evolution in two levels in humans and chimpanzees, Science 188:107-116, 1975.
    • (1975) Science , vol.188 , pp. 107-116
    • King, M.C.1    Wilson, A.C.2
  • 49
    • 22744439568 scopus 로고    scopus 로고
    • Evolution at two levels: On genes and form
    • Carroll SB, Evolution at Two Levels: On Genes and Form, PLoS Biol 3:e245, 2005.
    • (2005) PLoS Biol , vol.3
    • Carroll, S.B.1
  • 50
    • 0036436724 scopus 로고    scopus 로고
    • Phylogenetic analysis of 49 newly derived HIV-1 group O strains: High viral diversity but no group M-like subtype structure
    • Roques P, Robertson DL, Souquìere S et al., Phylogenetic analysis of 49 newly derived HIV-1 group O strains: high viral diversity but no group M-like subtype structure, Virology 302:259-273, 2002.
    • (2002) Virology , vol.302 , pp. 259-273
    • Roques, P.1    Robertson, D.L.2    Souquìere, S.3
  • 51
    • 0033863186 scopus 로고    scopus 로고
    • Some aspects of the natural history of HIV infection
    • Coutinho RA, Some aspects of the natural history of HIV infection, Trop Med Int Health 5:A22-25, 2000.
    • (2000) Trop Med Int Health , vol.5
    • Coutinho, R.A.1
  • 52
    • 32444450252 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host
    • Herbeck JT, Nickle DC, Learn GH et al., Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host, J Virol 80: 1637-1644, 2006.
    • (2006) J Virol , vol.80 , pp. 1637-1644
    • Herbeck, J.T.1    Nickle, D.C.2    Learn, G.H.3
  • 53
    • 34648830194 scopus 로고    scopus 로고
    • Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: The evolutionary rate of HIV-1 slows down when the epidemic rate increases
    • Maljkovic Berry I, Ribeiro R, Kothari M et al., Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: the evolutionary rate of HIV-1 slows down when the epidemic rate increases, J Virol 81:10625-11035, 2007.
    • (2007) J Virol , vol.81 , pp. 10625-11035
    • Maljkovic Berry, I.1    Ribeiro, R.2    Kothari, M.3
  • 54
    • 77953663263 scopus 로고
    • HIV-1 diversity in France 1996-1998. The AC 11 laboratory network
    • Couturier E, Damond F, Roques P et al., HIV-1 diversity in France, 1996-1998. The AC 11 laboratory network, Bull Soc Pathol Exot 88:24-28, 1995.
    • (1995) Bull Soc Pathol Exot , vol.88 , pp. 24-28
    • Couturier, E.1    Damond, F.2    Roques, P.3
  • 55
    • 27144455019 scopus 로고    scopus 로고
    • Replicative fitness of historical and recent HIV-1 isolates suggests HIV-1 attenuation over time
    • Arïen KK, Troyer RM, Gali Y, Colebunders RL, Arts EJ, Vanham G, Replicative fitness of historical and recent HIV-1 isolates suggests HIV-1 attenuation over time, AIDS 19:1555-1564, 2005.
    • (2005) AIDS , vol.19 , pp. 1555-1564
    • Arïen, K.K.1    Troyer, R.M.2    Gali, Y.3    Colebunders, R.L.4    Arts, E.J.5    Vanham, G.6
  • 56
    • 33846502673 scopus 로고    scopus 로고
    • Is HIV-1 evolving to a less virulent form in humans?
    • Arïen KK, Vanham G, Arts EJ, Is HIV-1 evolving to a less virulent form in humans?, Nat Rev Microbiol 5:141-151, 2007.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 141-151
    • Arïen, K.K.1    Vanham, G.2    Arts, E.J.3
  • 57
    • 27144526263 scopus 로고    scopus 로고
    • Is HIV-1 evolving to a less virulent (pathogenic) virus?
    • Quiñones-Mateu ME, Is HIV-1 evolving to a less virulent (pathogenic) virus?, AIDS 19:1689-1690, 2005.
    • (2005) AIDS , vol.19 , pp. 1689-1690
    • Quiñones-Mateu, M.E.1
  • 58
    • 0028508565 scopus 로고
    • Migrations et SIDA en Afrique
    • in French
    • Du Guerney J, Migrations et SIDA en Afrique, Chron CEPED Autumn (15):4-5, 1994 (in French).
    • (1994) Chron CEPED Autumn , vol.15 , pp. 4-5
    • Du Guerney, J.1
  • 59
    • 0025028363 scopus 로고
    • La ǵeographie de l'infection par les virus de l'immunod́ eficience humaine (VIH) en Afrique Noire: Mise en ́evidence de facteurs d'́epid́emisation et de ŕegionalisation
    • in French
    • Amat-Roze JM, Coulaud JP, Charmot G, La ǵeographie de l'infection par les virus de l'immunod́eficience humaine (VIH) en Afrique Noire: mise en ́evidence de facteurs d'́epid́emisation et de ŕegionalisation, Bull Soc Pathol Exot 83:137-148, 1990 (in French).
    • (1990) Bull Soc Pathol Exot , vol.83 , pp. 137-148
    • Amat-Roze, J.M.1    Coulaud, J.P.2    Charmot, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.