Global epidemiology of HIV

Journal of Medical Virology

Volumn 78, Issue SUPPL. 1, 2006, Pages

  McCutchan, Francine E ^a  

^a US Military HIV Research Program   (United States)

Author keywords

HIV epidemiology; HIV strains; HIV subtypes and recombinants; HIV variation

Indexed keywords

EPIDEMIC; GENE SEQUENCE; GENETIC VARIABILITY; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 2; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; REVIEW; VIRUS CLASSIFICATION; VIRUS RECOMBINANT; VIRUS STRAIN;

EPIDEMIOLOGY, MOLECULAR; HIV INFECTIONS; HIV-1; HIV-2; HUMANS; PREVALENCE; RNA, VIRAL; VARIATION (GENETICS); WORLD HEALTH;

HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 2;

EID: 33745621323     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.20599     Document Type: Review

References (29)

1. Arroyo MA, Hoelscher M, Sanders-Buell E, Herbinger KH, Samky E, Maboko L, Hoffmann O, Robb MR, Birx DL, McCutchan FE. 2004, HIV type 1 subtypes among blood donors in the Mbeya region of southwest Tanzania. AIDS Res Hum Retroviruses 20:895-901.
2. Arroyo MA, Hoelscher M, Sateren W, Samky E, Maboko L, Hoffmann O, Kijak GH, Robb M, Birx DL, McCutchan FE. 2005. HIV-1 diversity and prevalence differ between urban and rural areas in the Mbeya region of Tanzania. AIDS 19:1517-1524.
3. Brennan CA, Hackett JJ, Zekeng L, Lund JK, Vallari AS, Hickman RK, Gurtler L, Kaptue L, Von Overbeck J, Hampl H, Devare SG. 1997. Sequence of gp41env immunodominant region of HIV type 1 group O from West Central Africa. AIDS Res Hum Retroviruses 13:901-904.
4. Carr JK, Avila M, Gomez Carrillo M, Salomon H, Hierholzer J, Watanaveeradej V, Pando MA, Negrete M, Russell KL, Sanchez J, Birx DL, Andrade R, Vinoles J, McCutchan FE. 2001a. Diverse BF recombinants have spread widely since the introduction of HIV-1 into South America, Aids 15:F41-F47.
5. Carr JK, Torimiro JN, Wolfe ND, Eitel MN, Kim B, Sanders-Buell E, Jagodzinski LL, Gotte D, Burke DS, Birx DL, McCutchan FE. 2001b. The AG recombinant IbNG and novel strains of group M HIV-1 are common in Cameroon. Virology 286:168-181.
6. Delgado E, Thomson MM, Villahermosa ML, Sierra M, Ocampo A, Miralles C, Rodriguez-Perez R, Diz-Aren J, Ojea-de Castro R, Losada E, Cuevas MT, Vazquez-de Parga E, Carmona R, Perez-Alvarez L, Medrano L, Cuevas L, Taboada JA, Najera R. 2002. Identification of a newly characterized HIV-1 BG intersubtype circulating recombinant form in Galicia, Spain, which exhibits a pseudotype-like virion structure. J Acquir Immune Defic Syndr 29:536-543.
7. Dowling WE, Kim B, Mason CJ, Wasunna KM, Alam U, Elson L, Birx DL, Robb ML, McCutchan FE, Carr JK. 2002. Forty-one near full-length HIV-1 sequences from Kenya reveal an epidemic of subtype A and A-containing recombinants. Aids 16:1809-1820.
8. Gao F, Bailes E, Robertson DL, Chen Y, Rodenburg CM, Michael SF, Cummins LB, Arthur LO, Peeters M, Shaw GM, Sharp PM, Hahn BH. 1999. Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes. Nature 397:436-441.
9. Gerhardt M, Mloka D, Tovanabutra S, Sanders-Buell E, Hoffmann O, Maboko L, Mmbando D, Birx D, McCutchan F, Hoelscher M. 2005. In-depth, longitudinal analysis of the viral quasispecies in a late-stages HIV-1 triple infected individual using a multiple PCR primer approach. J Virol 79:8249-8261.
10. Harris ME, Serwadda D, Sewankambo N, Kim B, Kigozi G, Kiwanuka N, Phillips JB, Wabwire F, Meehen M, Lutalo T, Lane JR, Merling R, Gray R, Wawer M, Birx DL, Robb ML, McCutchan FE. 2002. Among 46 near full length HIV type 1 genome sequences from Rakai District, Uganda, subtype D and AD recombinants predominate. AIDS Res Hum Retroviruses 18:1281-1290.
11. Ho DD. 1997. Dynamics of HIV-1 replication in vivo. J Clin Invest 99:2565-2567.
12. Levy DN, Aldrovandi GM, Kutsch O, Shaw GM. 2004. Dynamics of HIV-1 recombination in its natural target cells. Proc Natl Acad Sci USA 101:4204-4209.
13. McCutchan FE. 1999. Global diversity in human immunodeficiency viruses. In: Crandall KA, editor. The evolution of HIV. Baltimore: The Johns Hopkins University Press. p 41-101.
14. McCutchan FE. 2000. Understanding the genetic diversity of HIV-1. Aids 14:S31-S44.
15. McCutchan FE, Carr JK, Murphy D, Piyasirisilp S, Gao F, Hahn B, Yu X-F, Beyrer C, Birx DL. 2002. Precise mapping of recombination breakpoints suggests a common parent of two BC recombinant strains circulating in China. AIDS Res Hum Retroviruses 18:1135-1140.
16. McCutchan FE, Carr JK, Tovanabutra S, Yu X-F, Beyrer C, Birx DL. 2003. HIV-1 and drug trafficking: Viral strains illuminate networks and provide focus for interventions. Spain: Barcelona. pp 112-118.
17. McCutchan FE, Sankale JL, M'Boup S, Kim B, Tovanabutra S, Hamel DJ, Brodine SK, Kanki PJ, Birx DL. 2004. HIV-1 circulating recombinant form CRF09_cpx from West Africa combines subtypes A, F, and G and may share ancestors with CRF02_AG and Z321. AIDS Res Hum Retroviruses 20:819-826.
18. McCutchan FE, Hoelscher M, Tovanabutra S, Piyasirisilp S, Sanders-Buell E, Ramos G, Jagodzinski L, Polonis V, Maboko L, Mmbando D, Hoffmann O, Riedner G, von Sonnenburg F, Robb M, Birx DL. 2005. In-depth analysis of a heterosexually acquired HIV-1 superinfection: Evolution, temporal fluctuation, and inter-compartment dynamics from the seronegative window period through 30 months post-infection. J Virol 79:11693-11704.
19. Nerrienet E, Santiago ML, Foupouapouognigni Y, Bailes E, Mundy NI, Njinku B, Kfutwah A, Muller-Trutwin MC, Barre-Sinoussi F, Shaw GM, Sharp PM, Hahn BH, Ayouba A. 2005. Simian immunodeficiency virus infection in wild-caught chimpanzees from cameroon. J Virol 79:1312-1319.
20. Robertson DL, Sharp PM, McCutchan FE, Hahn BH. 1995. Recombination in HIV-1 [letter]. Nature 374:124-126.
21. Robertson DL, Anderson JP, Bradac JA, Carr JK, Foley B, Funkhouser RK, Gao F, Hahn BH, Kalish ML, Kuiken C, Learn GH, Leitner T, McCutchan F, Osmanov S, Peeters M, Pieniazek D, Salminen M, Sharp PM, Wolinsky S, Korber B. 2000. HIV-1 nomenclature proposal [letter]. Science 288:55-56.
22. Roques P, Robertson DL, Souquiere S, Apetrei C, Nerrienet E, Barre-Sinoussi F, Muller-Trutwin M, Simon F. 2004. Phylogenetic characteristics of three new HIV-1 N strains and implications for the origin of group N. Aids 18:1371-1381.
23. Sharp PM, Bailes E, Chaudhuri RR, Rodenburg CM, Santiago MO, Hahn BH. 2001. The origins of acquired immune deficiency syndrome viruses: Where and when? Philos Trans R Soc Lond B Biol Sci 356:867-876.
24. Sierra M, Thomson MM, Rios M, Casado G, Castro RO, Delgado E, Echevarria G, Munoz M, Colomina J, Carmona R, Vega Y, Parga EV, Medrano L, Perez-Alvarez L, Contreras G, Najera R. 2005. The analysis of near full-length genome sequences of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Chile, Venezuela and Spain reveals their relationship to diverse lineages of recombinant viruses related to CRF12_BF. Infect Genet Evol 5:209-217.
25. Thomson MM, Sierra M, Tanuri A, May S, Casado G, Manjon N, Najera R. 2004. Analysis of near full-length genome sequences of HIV type 1 BF intersubtype recombinant viruses from Brazil reveals their independent origins and their lack of relationship to CRF12_BF. AIDS Res Hum Retroviruses 20:1126-1133.
26. Tovanabutra S, Watanaveeradej V, Viputtikul K, De Souza M, Razak MH, Suriyanon V, Jittiwutikarn J, Sriplienchan S, Nitayaphan S, Benenson MW, Sirisopana N, Renzullo PO, Brown AE, Robb ML, Beyrer C, Celentano DD, McNeil JG, Birx DL, Carr JK, McCutchan FE. 2003. A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand. AIDS Res Hum Retroviruses 19:561-567.
27. UNAIDS. 2004. Report on the Global AIDS Epidemic. www.unaids.org.
28. Wolfe ND, Heneine W, Carr JK, Garcia AD, Shanmugam V, Tamoufe U, Torimiro JN, Prosser AT, Lebreton M, Mpoudi-Ngole E, McCutchan FE, Birx DL, Folks TM, Burke DS, Switzer WM. 2005. Emergence of unique primate T-lymphotropic viruses among central African bushmeat hunters. Proc Natl Acad Sci USA 102:7994-7999.
29. Yamaguchi J, Bodelle P, Vallari AS, Coffey R, McArthur CP, Schochetman G, Devare SG, Brennan CA. 2004. HIV infections in Northwestern Cameroon: Identification of HIV type 1 group O and dual HIV type 1 group M and group O infections. AIDS Res Hum Retroviruses 20:944-957.