Near-isotropic 3D optical nanoscopy with photon-limited chromophores

Proceedings of the National Academy of Sciences of the United States of America

Volumn 107, Issue 22, 2010, Pages 10068-10073

  Tang, Jianyong ^a   Akerboom, Jasper ^a   Vaziri, Alipasha ^a   Looger, Loren L ^a   Shank, Charles V ^a  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

3D bioimaging; Bacterial imaging; Biophotonics; Nanoimaging; Neuron imaging

Indexed keywords

FLUORESCENT DYE;

ARTICLE; BACTERIAL CELL; DENDRITE; FLUORESCENCE MICROSCOPE; MICROSCOPY; NONHUMAN; OPTICAL NANOSCOPY; PHOTON; PRIORITY JOURNAL; THREE DIMENSIONAL IMAGING; VIRTUAL VOLUME SUPERRESOLUTION MICROSCOPY;

ANIMALS; BASE SEQUENCE; DENDRITES; DNA PRIMERS; ESCHERICHIA COLI K12; ESCHERICHIA COLI PROTEINS; IMAGING, THREE-DIMENSIONAL; LUMINESCENT PROTEINS; MICROSCOPY, FLUORESCENCE; NANOTECHNOLOGY; OPTICAL DEVICES; PHOTONS; RATS; RATS, SPRAGUE-DAWLEY; RECOMBINANT FUSION PROTEINS;

BACTERIA (MICROORGANISMS);

EID: 77953405697     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1004899107     Document Type: Article

References (53)

1. Hell SW, Wichmann J (1994) Breaking the diffraction resolution limit by stimulated-emission - stimulated-emission-depletion fluorescence microscopy. Opt Lett 19(11):780-782.
2. Hein B, Willig KI, Hell SW (2008) Stimulated emission depletion (STED) nanoscopy of a fluorescent protein-labeled organelle inside a living cell. Proc Natl Acad Sci USA 105:14271-14276.
3. Gustafsson MGL (2000) Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. J Microsc-Oxford 198:82-87.
4. Gustafsson MGL (2005) Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution. Proc Natl Acad Sci USA 102:13081-13086.
5. Betzig E, et al. (2006) Imaging intracellular fluorescent proteins at nanometer resolution. Science 313:1642-1645. (Pubitemid 44414039)
6. Hess ST, Girirajan TPK, Mason MD (2006) Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophys J 91:4258-4272.
7. Rust MJ, Bates M, Zhuang XW (2006) Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat Methods 3:793-795. (Pubitemid 44445825)
8. Sharonov A, Hochstrasser RM (2006) Wide-field subdiffraction imaging by accumulated binding of diffusing probes. Proc Natl Acad Sci USA 103:18911-18916.
9. Biteen JS, et al. (2008) Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP. Nat Methods 5:947-949.
10. Gelles J, Schnapp BJ, Sheetz MP (1988) Tracking kinesin-driven movements with nanometre-scale precision. Nature 331:450-453.
11. Kao HP, Verkman AS (1994) Tracking of single fluorescent particles in 3 dimensions - use of cylindrical optics to encode particle position. Biophys J 67:1291-1300.
12. Pavani SRP, Piestun R (2008) Three dimensional tracking of fluorescent microparticles using a photon-limited double-helix response system. Opt Express 16:22048-22057.
13. Toprak E, Balci H, Blehm BH, Selvin PR (2007) Three-dimensional particle tracking via bifocal imaging. Nano Lett 7:2043-2045.
14. Yildiz A, et al. (2003) Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization. Science 300:2061-2065.
15. Lippincott-Schwartz J, Patterson GH (2003) Development and use of fluorescent protein markers in living cells. Science 300:87-91.
16. Patterson GH, Lippincott-Schwartz J (2002) A photoactivatable GFP for selective photolabeling of proteins and cells. Science 297:1873-1877.
17. Ando R, Hama H, Yamamoto-Hino M, Mizuno H, Miyawaki A (2002) An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein. Proc Natl Acad Sci USA 99:12651-12656.
18. Chudakov DM, et al. (2004) Photoswitchable cyan fluorescent protein for protein tracking. Nat Biotechnol 22:1435-1439.
19. McKinney SA, Murphy CS, Hazelwood KL, Davidson MW, Looger LL (2009) A bright and photostable photoconvertible fluorescent protein. Nat Methods 6:131-133.
20. Subach FV, et al. (2009) Photoactivatable mCherry for high-resolution two-color fluorescence microscopy. Nat Methods 6:153-159.
21. Shannon CE (1949) Communication in the presence of noise. Proc Inst Radio Eng 37:10-21.
22. Shroff H, Galbraith CG, Galbraith JA, Betzig E (2008) Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics. Nat Methods 5:417-423.
23. Shtengel G, et al. (2009) Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure. Proc Natl Acad Sci USA 106:3125-3130.
24. Bates M, Huang B, Dempsey GT, Zhuang XW (2007) Multicolor super-resolution imaging with photo-switchable fluorescent probes. Science 317:1749-1753.
25. Huang B, Wang WQ, Bates M, Zhuang XW (2008) Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy. Science 319:810-813.
26. Juette MF, et al. (2008) Three-dimensional sub-100 nm resolution fluorescence microscopy of thick samples. Nat Methods 5:527-529.
27. Pavani SRP, et al. (2009) Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function. Proc Natl Acad Sci USA 106:2995-2999.
28. Thompson RE, Larson DR, Webb WW (2002) Precise nanometer localization analysis for individual fluorescent probes. Biophys J 82:2775-2783.
29. Deng Y, Shaevitz JW (2009) Effect of aberration on height calibration in three-dimensional localization-based microscopy and particle tracking. Appl Optics 48:1886-1890.
30. Mlodzianoski MJ, Juette MF, Beane GL, Bewersdorf J (2009) Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy. Opt Express 17:8264-8277.
31. McMahon MD, Berglund AJ, Carmichael P, McClelland JJ, Liddle JA (2009) 3D particle trajectories observed by orthogonal tracking microscopy. ACS Nano 3:609-614.
32. Seale KT, et al. (2008) Mirrored pyramidal wells for simultaneous multiple vantage point microscopy. J Microsc-Oxford 232:1-6.
33. Lindek S, Stefany T, Stelzer EHK (1997) Single-lens theta microscopy - a new implementation of confocal theta microscopy. J Microsc-Oxf 188:280-284.
34. Brouns SJJ, et al. (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321:960-964.
35. Beloglazova N, et al. (2008) A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats. J Biol Chem 283:20361-20371.
36. Edgar R, et al. (2008) Bacteriophage infection is targeted to cellular poles. Mol Microbiol 68:1107-1116.
37. Rokney A, et al. (2009) E. coli transports Aggregated Proteins to the Poles by a Specific and Energy-Dependent Process. J Mol Biol 392:589-601.
38. Kubitschek HE (1990) Cell volume increase in Escherichia coli after shifts to richer media. J Bacteriol 172:94-101.
39. Shih YL, Rothfield L (2006) The bacterial cytoskeleton. Microbiol Mol Biol R 70:729-754.
40. Figge RM, Divakaruni AV, Gober JW (2004) MreB, the cell shape-determining bacterial actin homologue, co-ordinates cell wall morphogenesis in Caulobacter crescentus. Mol Microbiol 51:1321-1332.
41. Gitai Z, Dye N, Shapiro L (2004) An actin-like gene can determine cell polarity in bacteria. Proc Natl Acad Sci USA 101:8643-8648.
42. Kim SY, Gitai Z, Kinkhabwala A, Shapiro L, Moerner WE (2006) Single molecules of the bacterial actin MreB undergo directed treadmilling motion in Caulobacter crescentus. Proc Natl Acad Sci USA 103:10929-10934.
43. Kruse T, Gerdes K (2005) Bacterial DNA segregation by the actin-like MreB protein. Trends Cell Biol 15:343-345.
44. Madabhushi R, Marians KJ (2009) Actin Homolog MreB Affects Chromosome Segregation by Regulating Topoisomerase IV in Escherichia coli. Mol Cell 33:171-180.
45. Munoz-Espin D, et al. (2009) The actin-like MreB cytoskeleton organizes viral DNA replication in bacteria. Proc Natl Acad Sci USA 106:13347-13352.
46. Shih YL, Kawagishi I, Rothfield L (2005) The MreB and Min cytoskeletal-like systems play independent roles in prokaryotic polar differentiation. Mol Microbiol 58:917-928.
47. Varma A, Young KD (2009) In Escherichia coli, MreB and FtsZ direct the synthesis of lateral cell wall via independent pathways that require PBP 2. J Bacteriol 191:3526-3533.
48. Espeli O, Nurse P, Levine C, Lee C, Marians KJ (2003) SetB: An integral membrane protein that affects chromosome segregation in Escherichia coli. Mol Microbiol 50:495-509. (Pubitemid 37297130)
49. Jones LJF, Carballido-Lopez R, Errington J (2001) Control of cell shape in bacteria: Helical, actin-like filaments in Bacillus subtilis. Cell 104:913-922. (Pubitemid 32289283)
50. Shiomi D, Yoshimoto M, Homma M, Kawagishi I (2006) Helical distribution of the bacterial chemoreceptor via colocalization with the Sec protein translocation machinery. Mol Microbiol 60:894-906.
51. Bhide PG, Lieberman AR, Campbell G (1988) Dendritic invagination of developing optic tract axons in the hamster. Exp Brain Res 73:519-522.
52. Vaziri A, Tang JY, Shroff H, Shank CV (2008) Multilayer three-dimensional super resolution imaging of thick biological samples. Proc Natl Acad Sci USA 105:20221-20226.
53. Berglund AJ, McMahon MD, McClelland JJ, Liddle JA (2010) Theoretical model of errors in micromirror-based three-dimensional particle tracking. Opt Lett, in press.