Gene sequence, bioinformatics and enzymatic characterization of α-amylase from Saccharomycopsis fibuligera KZ

Protein Journal

Volumn 29, Issue 5, 2010, Pages 355-364

  Hostinová, Eva ^a   Janeček, Štefan ^a   Gašperík, Juraj ^a  

^a Institute of Molecular Biology Slovak Academy of Sciences   (Slovakia)

Author keywords

Protein bioinformatics; Raw starch digestion; Saccharomycopsis fibuligera; Yeast amylase

Indexed keywords

AMYLASE; CARBOHYDRATE; RECOMBINANT ENZYME; SFAMY KZ ENZYME; UNCLASSIFIED DRUG; FUNGAL PROTEIN; RECOMBINANT PROTEIN; STARCH;

ADSORPTION; ARTICLE; BIOINFORMATICS; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME PURIFICATION; ENZYME STRUCTURE; FUNGAL STRAIN; GENE SEQUENCE; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN EXPRESSION; SACCHAROMYCOPSIS FIBULIGERA; AMINO ACID SEQUENCE; BIOLOGY; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; GENETICS; HYDROLYSIS; MAIZE; METABOLISM; MOLECULAR GENETICS; PH; PHYLOGENY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCOPSIS; TEMPERATURE;

ALPHA-AMYLASES; AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; FUNGAL PROTEINS; HYDROGEN-ION CONCENTRATION; HYDROLYSIS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINANT PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCOPSIS; STARCH; TEMPERATURE; ZEA MAYS;

EID: 77953330021     PISSN: 15723887     EISSN: 18758355     Source Type: Journal    
DOI: 10.1007/s10930-010-9260-6     Document Type: Article

References (63)

1. Apweiler R, Martin MJ, O’Donovan C, Magrane M, …, Zhang J (2010) Nucleic Acids Res 38 (Database issue): D142-D148
2. Baeva LF, Kozlov DG, Brevnova EE, Benevolenskij SV (1996) Prikl Biochim Mikrobiol 32:311-314
3. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) Nucleic Acids Res 28:235-242
4. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B (2009) Nucleic Acids Res 37 (Database issue):D233-D238
5. Chi Z, Chi Z, Liu G, Wang F, Ju L, Zhang T (2009) Biotechnol Advan 27:423-431
6. Christiansen C, Abou Hachem M, Janecek S, Viksø-Nielsen A, Blennow A, Svensson B (2009) FEBS J 276:5006-5029
7. Da Lage JL, Feller G, Janecek S (2004) Cell Mol Life Sci 61:97-109
8. Dubois M, Gilles GA, Hamilton JK, Rebers PA, Smith F (1956) Anal Chem 28:350-356
9. Eksteen JM, Steyn AJ, van Rensburg P, Cordero Otero RR, Pretorius IS (2003) Yeast 20:69-78
10. Eksteen JM, Van Rensburg P, Cordero Otero RR, Pretorius IS (2003) Biotechnol Bioeng 84:639-646
11. Felsenstein J (1985) Evolution 39:783-791
12. Galdino AS, Ulhoa CJ, Moraes L, Prates MV, Bloch C, Torres F (2008) FEMS Microbiol Lett 280:189-194
13. Gašperík J, Hostinová E (1990) Biologia 45:1013-1019
14. Gašperík J, Hostinová E (1993) Curr Microbiol 27:11-14
15. Gašperík J, Kováč Ľ., Mináriková O (1991) Int J Biochem 23:21-25
16. Gietz RD, Woods RA (2002) Methods Enzymol 350:87-96
17. Gupta R, Gigras P, Mohapatra H, Goswam VK, Chauhan B (2003) Process Biochem 38:1599-1616
18. Hasan K, Ismaya WT, Kardi I, Andiyana Y, Kusumawidjaya S, Ishmayana S, Subroto T, Soemitro S (2008) Biologia 63:1044-1050
19. Hostinová E, Balanová J, Zelinka J (1990) Biologia 45:301-306
20. Hostinová E, Solovicová A, Dvorský R, Gašperík J (2003) Arch Biochem Biophys 411:189-195
21. Iefuji H, Chino M, Kato M, Iimura Y (1996) Biochem J 318:989-996
22. Itoh T, Ohtsuki I, Yamashita I, Fukui S (1987) J Bacteriol 169:4171-4176
23. Itoh T, Yamashita I, Fukui S (1987) FEBS Lett 219:339-342
24. Janecek S (1994) Eur J Biochem 224:519-524
25. Janecek S (1997) Progr Biophys Mol Biol 67:67-97
26. Janecek S (2002) Biologia 57(Suppl. 11):29-41
27. Janecek S, Leveque E, Belarbi A, Haye B (1999) J Mol Evol 48:421-426
28. Janecek S, Sevcik J (1999) FEBS Lett 456:119-125
29. Kato S, Shimizu-Ibuka A, Mura K, Takeuchi A, Tokue C, Arai S (2007) Biosci Biotechnol Biochem 71:3007-3013
30. Kelley LA, Sternberg MJE (2009) Nat Protoc 4:363-371
31. Kelly RM, Dijkhuizen L, Leemhuis H (2009) J Biotechnol 140:184-193
32. MacGregor EA, Janecek S, Svensson B (2001) Biochim Biophys Acta 1546:1-20
33. Machovic M, Janecek S (2006) Cell Mol Life Sci 63:2710-2724
34. Matsubara T, Ammar YB, Anindyawati T, Yamamoto S, Ito K, Iizuka M, Minamiura N (2004) J Biochem Mol Biol 37:422-428
35. Matsui I, Matsui E, Ishikawa K, Miyairi S, Honda K (1990) Agric Biol Chem 54:2009-2015
36. Matsui I, Yoneda S, Ishikawa K, Miyairi S, Fukui S, Umeyama H, Honda K (1994) Biochemistry 18:451-458
37. Matsuura Y, Kusunoki M, Harada W, Kakudo M (1984) J Biochem 95:697-770
38. McCann AK, Barnett JA (1986) Yeast 2:109-115
39. Nielsen MM, Bozonet S, Seo ES, Motyan JA, Andersen JM, Dilokpimol A, Abou Hachem M, Gyemant G, Naested H, Kandra L, Sigurskjold BW, Svensson B (2009) Biochemistry 18:7686-7697
40. Page RD (1996) Comput Appl Biosci 12:357-358
41. Pandey A, Nigam P, Soccol CR, Soccol VT, Singh D, Mohan R (2000) Biotechnol Appl Biochem 31:135-152
42. Ragunath C, Manuel SGA, Kasinathan C, Ramasubbu N (2008) Biologia 63:1028-1034
43. Ragunath C, Manuel SG, Venkataraman V, Sait HB, Kasinathan C, Ramasubbu N (2008) J Mol Biol 384:1232-1248
44. Ramachandran N, Pretorius IS, Cordero Otero RR (2005) Biologia 60(Suppl. 16):103-110
45. Robert X, Haser R, Gottschalk TE, Ratajczak F, Driguez H, Svensson B, Aghajari N (2003) Structure 11:973-984
46. Rodriguez-Sanoja R, Oviedo N, Sanches S (2005) Curr Opin Microbiol 8:260-267
47. Saitou N, Nei M (1987) Mol Biol Evol 4:406-425
48. Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
49. Shatsky M, Nussinov R, Wolfson HJ (2004) Proteins 56:143-156
50. Somogyi M (1952) J Biol Chem 195:19-23
51. Southall SM, Simpson PJ, Gilbert HJ, Williamson G, Williamson MP (1999) FEBS Lett 447:58-60
52. Stam MR, Danchin EG, Rancurel C, Coutinho PM, Henrissat B (2006) Protein Eng Des Sel 19:555-562
53. Steyn AJC, Marmur J, Pretorius IS (1995) Gene 166:65-71
54. Strikovsky A, Hradil J, Wulff G (2003) React Funct Polymers 54:49-61
55. Sun H, Zhao P, Ge X, Xia Y, Hao Z, Liu J, Peng M (2010) Appl Biochem Biotechnol 160:988-1003
56. Ševčík J, Hostinová E, Solovicová A, Gašperík J, Dauter Z, Wilson KS (2006) FEBS J 273:2161-2172
57. Thompson JD, Higgins D, Gibson TJ (1994) Nucleic Acids Res 22:4673-4680
58. Tibbot BK, Wong DWS, Robertson GH (2002) Biologia 57(Suppl. 11):229-238
59. Tranier S, Deville K, Robert X, Bozonnet S, Haser R, Svensson B, Aghajari N (2005) Biologia (Suppl. 16):37-46
60. van der Kaaij RM, Janecek S, van der Maarel MJ, Dijkhuizen L (2007) Microbiology 153:4003-4015
61. van der Maarel M, van der Veen B, Uitdehaag J, Leemhuis H, Dijkhuizen L (2002) J Biotechnol 94:137-155
62. Vernet T, Dignard D, Thomas DY (1987) Gene 52:225-233
63. Vujicic-Zagar A, Dijkstra BW (2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62:716-721