Spectroscopic and computational investigation of three Cys-to-Ser mutants of nickel superoxide dismutase: Insight into the roles played by the Cys2 and Cys6 active-site residues

Journal of Biological Inorganic Chemistry

Volumn 15, Issue 5, 2010, Pages 777-793

  Johnson, Olivia E ^a   Ryan, Kelly C ^b   Maroney, Michael J ^b   Brunold, Thomas C ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

Density functional theory; Magnetic circular dichroism; Nickel dependent superoxide dismutase; Redox active nickel enzymes

Indexed keywords

CYSTEINE; MUTANT PROTEIN; NICKEL; NICKEL SUPEROXIDE DISMUTASE; SERINE; SUPEROXIDE DISMUTASE; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; CIRCULAR DICHROISM; CONTROLLED STUDY; ELECTRONICS; ENZYME ACTIVE SITE; ENZYME ACTIVITY; GENE MUTATION; MAGNETIC FIELD; MATHEMATICAL ANALYSIS; PRIORITY JOURNAL; SPECTROSCOPY;

CATALYTIC DOMAIN; CIRCULAR DICHROISM; COMPUTER SIMULATION; CYSTEINE; LIGANDS; MODELS, BIOLOGICAL; MODELS, MOLECULAR; MUTATION; NICKEL; SERINE; SUPEROXIDE DISMUTASE;

EID: 77953287903     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00775-010-0641-2     Document Type: Article

References (135)

1. JA Imlay 2003 Annu Rev Microbiol 57 395 418 14527285
2. K Midorikawa S Kawanishi 2001 FEBS Lett 495 187 190 11334889
3. JS Valentine DL Wertz TJ Lyons L-L Liou JJ Goto EB Gralla 1998 Curr Opin Chem Biol 2 253 262 9667937
4. IM Moller 2001 Annu Rev Plant Physiol Plant Mol Biol 52 561 591 11337409
5. NA Simonian JT Coyle 1996 Rev Pharmacol Toxicol 36 83 106
6. W Beyer J Imlay I Fridovich 1991 Prog Nucl Acid Res Mol Biol 40 221 253
7. RHJ Brown 1997 Cold Spring Harb Monogr Ser 34 569 585
8. Chatterjee S, Fisher AB (2005) In: Bagchi D, Preuss HG (eds) Phytopharmaceuticals in cancer chemoprevention. CRC Press, Boca Raton, pp 171-186
9. B Halliwell 1990 Methods Enzymol 186 1 85 2172697
10. Halliwell B (1995) In: Valentine JS, Foote CS, Greenberg A, Liebman JF (eds) Active oxygen in biochemistry. Blackie, New York, pp 313-335
11. P Jenner CW Olanow 1998 Ann Neurol 44 S72 S84 9749577
12. S Passi R Ricci E Aleo M Cocchi 2005 Prog Nutr 7 3 22
13. D Trotti A Rolfs NC Danbolt JRH Brown MA Hediger 1999 Nat Neurosci 2 427 433 10321246
14. DC Wallace 1992 Science 256 628 632 1533953
15. JS Valentine PJ Hart 2003 Proc Natl Acad Sci USA 100 3617 3622 12655070
16. DM Kurtz 2004 Acc Chem Res 37 902 908 15612680
17. AF Miller 2004 Curr Opin Chem Biol 8 162 168 15062777
18. AF Miller DL Sorkin 1997 Commun Mol Cell Biophys 9 1 48
19. I Fridovich 1995 Annu Rev Biochem 64 97 112 7574505
20. Fridovich I, William JL, Lane MD (2004) Encyclopedia of biological chemistry. Elsevier, New York, pp 135-138
21. HD Youn EJ Kim JH Roe YC Hah SO Kang 1996 Biochem J 318 889 896 8836134
22. HD Youn H Youn JW Lee YI Yim JK Lee YC Hah SO Kang 1996 Arch Biochem Biophys 334 341 348 8900409
23. B Palenik B Brahamsha FW Larimer M Land L Hauser P Chain J Lamerdin W Regala EE Allen J McCarren I Paulsen A Dufresne F Partensky EA Webb J Waterbury 2003 Nature 424 1037 1042 12917641
24. DP Barondeau CJ Kassmann CK Bruns JA Tainer ED Getzoff 2004 Biochemistry 43 8038 8047 15209499
25. J Wuerges JW Lee YI Yim HS Yim SO Kang KD Carugo 2004 Proc Natl Acad Sci USA 101 8569 8574 15173586
26. PJ Hart MM Balbirnie NL Ogihara AM Nersissian MS Weiss JS Valentine D Eisenberg 1999 Biochemistry 38 2167 2178 10026301
27. TI Doukov TM Iverson J Seravalli SW Ragsdale CL Drennan 2002 Science 298 567 572 12386327
28. JA Kovacs 2004 Chem Rev 104 825 848 14871143
29. KC Chan Chung L Cao AV Dias IJ Pickering GN George DB Zamble 2008 J Am Chem Soc 130 14056 14057
30. C Harford B Sarkar 1997 Acc Chem Res 30 123 130
31. WN Lanzilotta DJ Schuller MV Thorsteinsson RL Kerby GP Roberts TL Poulos 2000 Nat Struct Biol 7 876 880 11017196
32. BS Chohan MJ Maroney 2006 Inorg Chem 45 1906 1908 16499349
33. PJ Farmer JH Reibenspies PA Lindahl MY Darensbourg 1993 J Am Chem Soc 115 4665 4674
34. PJ Farmer T Solouki DK Mills T Soma DH Russell JH Reibenspies MY Darensbourg 1992 J Am Chem Soc 114 4601 4605
35. CA Grapperhaus MY Darensbourg 1998 Acc Chem Res 31 451 459
36. CA Grapperhaus CS Mullins PM Kozlowski MS Mashuta 2004 Inorg Chem 43 2859 2866 15106973
37. KN Green SM Brothers RM Jenkins CE Carson CA Grapperhaus MY Darensbourg 2007 Inorg Chem 46 7536 7544 17685511
38. VE Kaasjager E Bouwman S Gorter J Reedijk CA Grapperhaus JH Reibenspies JJ Smee MY Darensbourg A Derecskei-Kovacs LM Thomson 2002 Inorg Chem 41 1837 1844 11925177
39. M Kumar GJ Colpas RO Day MJ Maroney 1989 J Am Chem Soc 111 8323 8325
40. JA Bellefeuille CA Grapperhaus A Derecskei-Kovacs JH Reibenspies MY Darensbourg 2000 Inorg Chim Acta 300-302 73 81
41. JJ Smee ML Miller CA Grapperhaus JH Reibenspies MY Darensbourg 2001 Inorg Chem 40 3601 3605 11421712
42. CB Allan G Davidson SB Choudhury Z Gu K Bose RO Day MJ Maroney 1998 Inorg Chem 37 4166 4167 11670546
43. AT Fiedler PA Bryngelson MJ Maroney TC Brunold 2005 J Am Chem Soc 127 5449 5462 15826182
44. KP Neupane J Shearer 2006 Inorg Chem 45 10552 10566 17173410
45. J Shearer A Dehestani F Abanda 2008 Inorg Chem 47 2649 2660 18330983
46. MJ Maroney 1999 Curr Opin Chem Biol 3 188 199 10226043
47. A Volbeda 1995 Nature 373 580 587 7854413
48. H Dobbek V Svetlitchnyi L Gremer R Huber O Meyer 2001 Science 293 1281 1285 11509720
49. U Ermler W Grabarse S Shima M Goubeaud RK Thauer 1997 Science 278 1457 1462 9367957
50. J Heddle DJ Scott S Unzai S-Y Park JRH Tame 2003 J Biol Chem 278 50322 50329 12960164
51. E Jabri MB Carr RP Hausinger PA Karplus 1995 Science 268 998 1004 7754395
52. HK Song SB Mulrooney R Huber RP Hausinger 2001 J Biol Chem 276 49359 49364 11591723
53. RK Watt PW Ludden 1999 Cell Mol Life Sci 56 604 625
54. SB Choudhury JW Lee G Davidson YI Yim K Bose ML Sharma SO Kang DE Cabelli MJ Maroney 1999 Biochemistry 38 3744 3752 10090763
55. RW Herbst A Guce PA Bryngelson KA Higgins KC Rynan DE Cabelli SC Garman MJ Maroney 2009 Biochemistry 48 3354 3369 19183068
56. WC Barrette DT Sawyer JA Fee K Asada 1983 Biochemistry 22 624 627 6340720
57. HJ Krueger RH Holm 1987 Inorg Chem 26 3645 3647
58. HJ Krueger G Peng RH Holm 1991 Inorg Chem 30 734 742
59. D Ray S Pal A Chakravorty 1986 Inorg Chem 25 2674 2677
60. TA Jackson TC Brunold 2004 Acc Chem Res 37 461 470 15260508
61. J Xie E Yikilmaz AF Miller TC Brunold 2002 J Am Chem Soc 124 3769 3774 11929267
62. D Tietze H Breitzke D Imhof E Kothe J Weston G Buntkowsky 2009 Chem Eur J 15 517 523
63. Ryan KC, Johnson OE, Brunold TC, Johnson MK (2010) J Biol Inorg Chem. doi: 10.1007/s00775-010-0645-y
64. IS Park LO Michel MA Pearson E Jabri PA Karplus SK Wang J Dong RA Scott BP Koehler MK Johnson RP Hausinger 1996 J Biol Chem 271 18632 18637 8702515
65. EJ Baerends DE Ellis P Ros 1973 Chem Phys 2 41 51
66. CF Guerra JG Snijders G te Velde EJ Baerends 1998 Theor Chem Acc 99 391 403
67. G te Velde EJ Baerends 1992 J Comput Phys 99 84 98
68. G te Velde FF Bickelhaupt EJ Baerends CF Guerra SJA Van Gisbergen JG Snijders T Ziegler 2001 J Comput Chem 22 931 967
69. L Versluis T Ziegler 1988 J Chem Phys 88 322 328
70. SH Vosko L WIlk M Nusair 1980 Can J Phys 58 1200
71. AD Becke 1993 J Chem Phys 98 5648 5652
72. JP Perdew 1986 Phys Rev B 33 8822 8824
73. Neese F (2005) ORCA 2.4. Max-Planck-Institut für Bioanorganische Chemie. Mülheim an der Ruhr
74. J Ridley MC Zerner 1973 Theor Chim Acta 32 111
75. MC Zerner GH Loew RF Kirchner UT Muellerwesterhoff 1980 J Am Chem Soc 102 589 599
76. AD Bacon MC Zerner 1979 Theor Chim Acta 53 21 54
77. AD Becke 1993 J Chem Phys 98 1372 1377
78. Lee C, Yang W, Parr RG (1988) Phys Rev B 37
79. A Schafer H Horn R Achlrichs 1992 J Chem Phys 97 2571 2577
80. F Weigand M Haeser 1997 Theor Chem Acc 97 331
81. A Schafer C Huber R Achlrichs 1994 J Chem Phys 100 5829 5835
82. L Laaksonen 1992 J Mol Graph 10 33 34 1504051
83. EM Boge DP Freyberg E Kokot GM Mockler E Sinn 1977 Inorg Chem 16 1655 1660
84. BS Hammes CJ Carrano 1999 Inorg Chem 38 3562 3568 11671105
85. LY Martin CR Sperati DH Busch 1977 J Am Chem Soc 99 2968 2981
86. Cameron JH, McCullough KJ (1990) J Chem Soc Dalton Trans 935-941
87. Lever ABP (1984) Inorganic Electronic Spectroscopy. Elsevier, New York, pp 507-530
88. Johnson MK (2000) In: Que L Jr (ed) Physical methods in bioinorganic chemistry: spectroscopy and magnetism. University Science Books, Sausalito, pp 253-259
89. PJ Desrochers J Telser SA Zvyagin A Ozarowski J Krzystek DA Vicic 2006 Inorg Chem 45 8930 8941 17054352
90. PJ Steenkamp 1987 Inorg Chim Acta 132 27 31
91. JW Kolis DE Hamilton NK Kildahl 1979 Inorg Chem 18 1826 1831
92. L Sacconi M Ciampolini GP Speroni 1965 J Am Chem Soc 87 3102 3106
93. L Sacconi P Nannelli N Nardi U Campigli 1965 Inorg Chem 4 943 949
94. L Sacconi PL Orioli M Di Vaira 1996 Inorg Chem 4 943 949
95. S Arakawa T Nozawa M Hatano 1974 Bull Chem Soc Jpn 47 2643 2646
96. Harding MJ, Mason SF, Robbins DJ, Thomson AJ (1971) J Chem Soc A 19:3058-3062
97. Harding MJ, Mason SF, Robbins DJ, Thomson AJ (1971) J Chem Soc A 19:3047-3058
98. E Hormann PC Riesen M Neuburger M Zehnder TA Kaden 1996 Helv Chim Acta 79 235 243
99. H Katô K Yorita Y Kato 1979 Bull Chem Soc Jpn 52 2465 2473
100. H Kobayashi K-D Bohdan 1972 Bull Chem Soc Jpn 45 2485 2490
101. Kobayashi N, Xizhang Z, Tetsuo O (1987) J Chem Soc Dalton Trans 1801-1803
102. AF Scheiner DJ Hamm 1973 Inorg Chem 12 2037 2048
103. Kiick KL (1991) Chemistry. University of Georgia, Athens, p 180
104. DF Averill JI Legg DL Smith 1971 Inorg Chem 11 2344 2349
105. Y Fukuda K Yamagata TA Kaden 1987 Bull Chem Soc Jpn 60 3569 3574
106. H Ohtsu K Tanaka 2003 Inorg Chem 43 3024 3030
107. H Ohtsu K Tanaka 2005 Chem Eur J 11 3420 3426
108. KP Neupane K Gearty A Francis J Shearer 2007 J Am Chem Soc 129 14605 14618 17985883
109. Battaglia LP, Berzolla PG, Corradi AB, Pelizzi C, Pelosi G, Solinas C (1992) J Chem Soc Dalton Trans 3089-3095
110. D Dobrzynska LB Jerzykiewicz M Duczmal A Wojciechowska K Jablonska J Palus A Ozarowski 2006 Inorg Chem 45 10479 10486 17173403
111. Q-Y Du Y-P Li L-Y Xin M-L Han 2005 Z Kristallogr NCS 220 539 540
112. Y Ihara Y Satake Y Fujimoto H Senda M Suzuki A Uehara 1991 Bull Chem Soc Jpn 64 2349 2352
113. DMM Ide RE Norman 2007 Acta Crystallogr E 63 m558 m560
114. IM Atkinson KA Byriel PSK Chia CHL Kennard AJ Leong LF Lindoy MP Lowe S Mahendran G Smith G Wei 1998 Aust J Chem 51 985 991
115. Thulstrup PN, Broge L, Larsen E, Springborg J (2003) J Chem Soc Dalton Trans 3199-3204
116. Z Xiao MJ Lavery M Ayhan SDB Scrofani MCJ Wilce JM Guss PA Tregloan GN George AG Wedd 1998 J Am Chem Soc 120 4135 4150
117. J Pons A Chadghan J Casabo A Alvarez-Larena JF Piniella X Solans M Font-Bardia J Ros 2001 Polyhedron 20 1029 1035
118. Y Elerman M Kabak 1993 Acta Crystallogr C 49 1905 1906
119. DO Nielson ML Larsen RD Willet JI Legg 1971 J Am Chem Soc 93 5079 5082
120. N Shintani K Sone Y Fukuda Y Ohashi 1991 Bull Chem Soc Jpn 64 252 258
121. ML Calatayud I Castro J Sletten J Cano F Lloret J Faus M Julve G Seitz K Mann 1996 Inorg Chem 35 2858 2865
122. R Stranger KL McMahon LR Gahan JI Bruce TW Hambley 1997 Inorg Chem 36 3466 3475 11670023
123. M Cha CL Gatlin SC Critchlow JA Kovacs 2002 Inorg Chem 32 5868 5877
124. BS Chohan SC Shoner JA Kovacs MJ Maroney 2004 Inorg Chem 43 7726 7734 15554637
125. Gomes L, Pereira E, de Castro B (2000) J Chem Soc Dalton Trans 1373-1379
126. Dutton JC, Fallon GD, Murray KS (1990) Chem Lett 983-986
127. WN Lipscomb N Strater 1996 Chem Rev 96 2375 2434 11848831
128. F-X Ruth-Gomis F Grams I Yiallouros H Nar U Kusthardt R Zwilling W Bode W Stocker 1994 J Biol Chem 269 17111 17117
129. MH Lee HS Pankratz S Wang RA Scott MG Finnegan MK Johnson JA Ippolito DW Christianson RP Hausinger 1993 Protein Sci 2 1042 1052 8318889
130. PE Carrington PT Chivers F Al-Mjeni RT Sauer MJ Maroney 2003 Nat Struct Biol 10 126 130 12524532
131. G Davidson SL Clugston JF Honek MJ Maroney 2000 Inorg Chem 39 2962 2963 11196887
132. M Haumann A Porthun T Buhrke P Liebisch W Meyer-Klaucke B Friedrich H Dau 2003 Biochemistry 42 11004 11015 12974636
133. CS Mullins CA Grapperhaus PM Kozlowski 2006 J Biol Chem 11 617 625
134. S Fox Y Wang A Silver M Millar 1990 J Am Chem Soc 112 3218 3220
135. A Dey SP Jeffery M Darensbourg KO Hodgson B Hedman EI Solomon 2007 Inorg Chem 46 4989 4996 17500514