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Characterization of UreG, identification of a UreD-UreF-UreF complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease
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Moncrief MBC, Hausinger RP: Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997, 179:4081-4086.
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Nucleotide sequences of two hydrogenase-related genes (hypA and hypB) from Bradyrhizobium japonicum, one of which (hypB) encodes an extremely histidine-rich region and guanine nucleotide-binding domains
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HypB protein of Bradyrhizobium japonicum is a metal-binding GTPase capable of binding 18 divalent nickel ions per dimer
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Kerby RL, Ludden PW, Roberts GP: In vivo nickel insertion into the carbon monoxide dehydrogenase of Rhodospirillum rubrum: Molecular and physiological characterization of cooCTJ. J Bacteriol 1997, 179:2259-2266. The work presented here establishes that the cooCTJ gene products are proteins involved in Ni insertion into carbon monoxide dehydrogenase in R. rubrum.
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The identification, purification, and characterization of CooJ. A nickel-binding protein that is coregulated with the Ni-containing CO dehydrogenase from Rhodospirillum rubrum
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Olson JW, Fu C, Maier RJ: The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997, 24:119-128. The HypB protein is a Ni metallochaperone with sequence similarities to other Ni metallochaperones. The studies presented show that complete deletion of hypB leads to a strain that lacks hydrogenase activity. A mutant strain lacking only the amino-terminal histidine-rich region expressed partial hydrogenase activity. The results indicate that the loss of the histidine-rich metal-binding area of HypB causes a decrease in the ability of the cells to sequester and store nickel for later use in one or more hydrogenase expression steps.
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0029812727
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Purification, characterization, and functional analysis of a truncated Klebsiella aerogenes UreE urease accessory protein lacking the histidine-rich carboxyl terminus
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Brayman TG, Hausinger RP: Purification, characterization, and functional analysis of a truncated Klebsiella aerogenes UreE urease accessory protein lacking the histidine-rich carboxyl terminus. J Bacteriol 1996, 178:5410-5416.
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0031921625
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Spectroscopic characterization of metal binding by Klebsiella aerogenes UreE urease accessory protein
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Colpas GJ, Brayman TG, McCracken J, Pressler MA, Babcock GT, Ming L-J, Colangelo CM, Scott RA, Hausinger RP: Spectroscopic characterization of metal binding by Klebsiella aerogenes UreE urease accessory protein. J Biol Inorg Chem 1998, 3:150-160. This paper provides the first description of the ligand environment of the two Ni sites in UreE that are involved in delivering Ni to apo-urease.
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Ming, L.-J.6
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24
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0032537553
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Overproduction and characterization of a dimeric non-zinc glyoxalase I from Escherichia coli: Evidence for optimal activation by nickel ions
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Clugston SL, Barnard JFJ, Kinach R, Miedema D, RUman R, Daub E, Honek JF: Overproduction and characterization of a dimeric non-zinc glyoxalase I from Escherichia coli: Evidence for optimal activation by nickel ions. Biochemistry 1998, 37:8754-8763. This is the first report of a nickel-containing isomerase. The paper includes an extensive description of the metal-binding properties, the metal-dependent activity and the molecular biology of E. coli glyoxalase I. A comparison of this enzyme with other versions of the enzyme is made, including the structurally characterized human Zn-containing glyoxalase I.
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Clugston, S.L.1
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0030927104
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Crystal structure of human glyoxalase I: Evidence for gene duplication and 3D domain swapping
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Control of peptide deformylase activity by metal cations
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Ragusa S, Blanquet S, Meinnel T: Control of peptide deformylase activity by metal cations. J Mol Biol 1998, 280:515-523. The possibility that bacterial peptide deformylases are Ni enzymes is raised. The work reported establishes that Ni is bound to the enzyme when the buffers used in purifying peptide deformylase from E. coli, T. thermophilus, and B. stearothermophilus contain Ni, and that the resulting Ni enzyme is two to three orders of magnitude more active than if the enzyme is purified as a Zn enzyme in the absence of Ni. The authors show that the activity of the Ni-bound form is sufficient to account for the turnover required by in the cell, while the Zn-bound form is not. In addition, the activity of the Zn-bound enzyme can be improved by the addition of Ni.
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Ragusa, S.1
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27
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Rajagopalan PTR, Yu XC, Pei D: Peptide deformylase: A new type of mononuclear iron protein. J Am Chem Soc 1997, 119:12418-12419.
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Rajagopalan, P.T.R.1
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28
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0032540851
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Solution structure of nickel-peptide deformylase
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Dardel F, Ragusa S, Lazennec C, Blanquet S, Meinnel T: Solution structure of nickel-peptide deformylase. J Mol Biol 1998, 280:501-513.
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Becker A, Schlichting I, Kabsch W, Schultz S, Wagner AFV: Structure of peptide deformylase and identification of the substrate binding site. J Biol Chem 1998, 273:11413-11416. The crystal structures of Ni-bound E. coli peptide deformylase with and without bound polyethylene glycol are reported. The structures reveal the details of the Ni site structure. Polyethylene glycol is a competitive inhibitor, and thus comparison of the structures obtained in its presence and absence allow the characterization of the substrate-binding site.
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Crystal structure of Escherichia coli peptide deformylase
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31
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0029651190
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Requirement of carbon dioxide for in vitro assembly of the urease nickel metallocenter
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Park IS, Hausinger RP: Requirement of carbon dioxide for in vitro assembly of the urease nickel metallocenter. Science 1995, 267:1156-1158.
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Metal ion interactions with urease and UreD-urease apoproteins
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Park I-S, Hausinger RP: Metal ion interactions with urease and UreD-urease apoproteins. Biochemistry 1996, 35:5345-5352.
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0030848288
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Structures of Cys319 variants and acetohydroxamate-inhibited Klebsiella aerogenes urease
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Pearson MA, Michel LO, Hausinger RP, Karplus PA: Structures of Cys319 variants and acetohydroxamate-inhibited Klebsiella aerogenes urease. Biochemistry 1997, 36:8164-8172. The crystal structures show that Cys319 is located on a mobile flap covering the urease active site. While it does not play an essential role in catalysis, it has a large influence on the structure and hydration of the active site. The structure of the acetohydroxamic acid inhibitor complex reveals a chelate interaction similar to those seen in other metalloenzymes and in nickel complexes, and supports a proposed mode of urea binding.
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Biochemistry
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Pearson, M.A.1
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35
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0032574684
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Chemical rescue of Klebsiella aerogenes urease variants lacking the carbamylated-lysine nickel ligand
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Pearson MA, Schaller RA, Michel LO, Karplus PA, Hausinger RP: Chemical rescue of Klebsiella aerogenes urease variants lacking the carbamylated-lysine nickel ligand. Biochemistry 1998, 37:6214-6220. The urease active site contains a bridging carbamate ligand derived from posttranslational modification of Lys217. This paper reports on the structure and Ni-binding capabilities of several mutant enzymes involving modification of Lys217. The mutants proteins did not bind Ni; however, the mutants could be chemically rescued by the addition of small organic acids (e.g. formate) in the presence of Ni. This work points to a role for an anionic carboxylate-like bridging group, not necessarily a carbamate, in defining the dinickel active site.
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Biochemistry
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Pearson, M.A.1
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36
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0013616059
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A conformational analysis study of a nickel(II) enzyme: Urease
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Smyj RP: A conformational analysis study of a nickel(II) enzyme: Urease. Theochem - J Mol Struct 1997, 391:207-223.
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0030725701
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Substitution of the urease active site carbamate by dithiocarbamate and vanadate
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2, the enzyme is not active and has spectral characteristics consistent with the presence of a dithiocarbamate bridging ligand. Reaction of the protein with vanadate led to the formation of active enzyme that contained two nickel ions and one vanadium ion.
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Biochemistry
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Structures and catalytic activities of carboxylate-bridged dinickel(II) complexes as models for the metal center of urease
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Yamaguchi K, Koshino S, Akagi F, Suzuki M, Uehara A, SUzuki S: Structures and catalytic activities of carboxylate-bridged dinickel(II) complexes as models for the metal center of urease. J Am Chem Soc 1997, 119:5752-5753. Crystallographically characterized dinickel complexes are reported that illustrate binding modes of urea and the importance of the bridging carbamate for catalysis. One of the complexes catalyzes the alcoholysis of urea.
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The complex of Bacillus pasteurii urease with β-mercaptoethanol from X-ray data at 1.65 Ȧ resolution
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Benini S, Rypniewski WR, Wilson KS, Ciurli S, Mangani S: The complex of Bacillus pasteurii urease with β-mercaptoethanol from X-ray data at 1.65 Ȧ resolution. J Biol Inorg Chem 1998, 3:268-273. The structure reported defines the binding mode of an inhibitor complex of the urease active site that has been extensively studied using spectroscopic techniques.
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Variable-temperature magnetic circular dichroism spectroscopy as a probe of the electronic and magnetic properties of nickel in jack bean urease
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41
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0001346276
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Structure of the dinuclear active site of urease. X-ray absorption spectroscopic study of native and 2-mercaptoethanol-inhibited bacterial and plant enzymes
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Wang S, Lee MH, Hausinger RP, Clark PA, Wilcox DE, Scott RA: Structure of the dinuclear active site of urease. X-ray absorption spectroscopic study of native and 2-mercaptoethanol-inhibited bacterial and plant enzymes. Inorg Chem 1994, 33:1589-1593.
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0030898952
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Chun J, Youn H-D, Yim Y-I, Lee H, Kim MY, Hah YC, Kang S-O: Streptomyces seoulensis sp nov. Int J Syst Bacteriol 1997, 47:492-498.
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0030588257
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46
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0029778889
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0031962963
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Kim E-J, Chung H-J, Suh B, Hah YC, Roe J-H: Transcriptional and post-transcriptional regulation by nickel of sodN gene encoding nickel-containing superoxide dismutase from Streptomyces coelicolor Muller. Mol Microbiol 1998, 27:187-195. The gene for S. coelicolor Muller Ni superoxide dismutase (NiSOD) (sodN) was cloned and sequenced. The gene encodes a polypeptide of 131 amino acids (14,703 Da), without any apparent sequence similarity to other SODs. The amino terminus of the purified NiSOD was located 14 amino acids downstream from the initiation codon of the deduced open reading frame, indicating the involvement of protein processing. Nickel ions were found to regulate transcription of sodN and to be involved in post-translational processing of the protein.
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