메뉴 건너뛰기




Volumn 87, Issue 2, 2010, Pages 647-655

Systematic screening of Escherichia coli single-gene knockout mutants for improving recombinant whole-cell biocatalysts

Author keywords

Cytochrome P450 monooxygenase; Keio collection; Systematic screening; Whole cell biocatalysis

Indexed keywords

7-ETHOXYCOUMARIN; 96-WELL PLATE; COMPLEMENTATION; CONTROL STRAIN; CYTOCHROME P450; DELETION MUTANTS; E. COLI; HIGH-THROUGHPUT SCREENING; KEIO COLLECTION; MONOOXYGENASES; POLAR EFFECT; SINGLE-GENE KNOCKOUT; TEST TUBE; WHOLE CELL BIOCATALYSTS; WHOLE-CELL BIOCATALYSIS;

EID: 77953083400     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-2505-7     Document Type: Article
Times cited : (8)

References (43)
  • 3
    • 0026647630 scopus 로고
    • Characterization of escherichia coli glnL mutations affecting nitrogen regulation
    • Atkinson MR, Ninfa AJ (1992) Characterization of Escherichia coli glnL mutations affecting nitrogen regulation. J Bacteriol 174:4538-4548
    • (1992) J Bacteriol , vol.174 , pp. 4538-4548
    • Atkinson, M.R.1    Ninfa, A.J.2
  • 5
    • 0001030631 scopus 로고
    • Regulation of ribosomal RNA promoters with a synthetic lac operator
    • Brosius J, Holy A (1984) Regulation of ribosomal RNA promoters with a synthetic lac operator. Proc Natl Acad Sci USA 81:6929-6933
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 6929-6933
    • Brosius, J.1    Holy, A.2
  • 6
    • 0020070412 scopus 로고
    • Characterization of a gene, glnL, the product of which is involved in the regulation of nitrogen utilization in escherichia coli
    • Chen YM, Backman K, Magasanik B (1982) Characterization of a gene, glnL, the product of which is involved in the regulation of nitrogen utilization in Escherichia coli. J Bacteriol 150:214-220
    • (1982) J Bacteriol , vol.150 , pp. 214-220
    • Chen, Y.M.1    Backman, K.2    Magasanik, B.3
  • 7
    • 45149130601 scopus 로고    scopus 로고
    • Advancing biocatalysis through enzyme, cellular, and platform engineering
    • Cirino PC, Sun LH (2008) Advancing biocatalysis through enzyme, cellular, and platform engineering. Biotechnol Prog 24:515-519
    • (2008) Biotechnol Prog , vol.24 , pp. 515-519
    • Cirino, P.C.1    Sun, L.H.2
  • 8
    • 0028951033 scopus 로고
    • The Cpx two-component signal transduction pathway of escherichia coli regulates transcription of the gene specifying the stree-inducible periplasmic protease, DegP
    • Danese PN, Snyder WB, Cosma CL, Davis LJ, Silhavy TJ (1995) The Cpx two-component signal transduction pathway of Escherichia coli regulates transcription of the gene specifying the stree-inducible periplasmic protease, DegP. Genes Dev 9:387-398
    • (1995) Genes Dev , vol.9 , pp. 387-398
    • Danese, P.N.1    Snyder, W.B.2    Cosma, C.L.3    Davis, L.J.4    Silhavy, T.J.5
  • 9
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97:6640-6645
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 10
    • 33646072467 scopus 로고    scopus 로고
    • The Cpx system of escherichia coli , a strategic signaling pathway for confronting adverse conditions and for settling biofilm communities?
    • Dorel C, Lejeune P, Rodrigue A (2006) The Cpx system of Escherichia coli, a strategic signaling pathway for confronting adverse conditions and for settling biofilm communities? Res Microbiol 157:306-314
    • (2006) Res Microbiol , vol.157 , pp. 306-314
    • Dorel, C.1    Lejeune, P.2    Rodrigue, A.3
  • 11
    • 0035424201 scopus 로고    scopus 로고
    • Using proteins in their natural environment: Potential and limitations of microbial whole-cell hydroxylations in applied biocatalysis
    • Duetz WA, Beilen JB, Witholt B (2001) Using proteins in their natural environment: potential and limitations of microbial whole-cell hydroxylations in applied biocatalysis. Curr Opin Biotechnol 12:419-425
    • (2001) Curr Opin Biotechnol , vol.12 , pp. 419-425
    • Duetz, W.A.1    Beilen, J.B.2    Witholt, B.3
  • 13
    • 67149096046 scopus 로고    scopus 로고
    • Efficient biotransformations using escherichia coli with tolC acrAB mutations expressing cytochrome P450 genes
    • Fujii T, Fujii Y, Machida K, Ochiai A, Ito M (2009) Efficient biotransformations using Escherichia coli with tolC acrAB mutations expressing cytochrome P450 genes. Biosci Biotechnol Biochem 73:805-810
    • (2009) Biosci Biotechnol Biochem , vol.73 , pp. 805-810
    • Fujii, T.1    Fujii, Y.2    Machida, K.3    Ochiai, A.4    Ito, M.5
  • 14
    • 0029161078 scopus 로고
    • Characterization of the escherichia coli gcvR gene encoding a negative regulator of gcv expression
    • Ghrist AC, Stauffer GV (1995) Characterization of the Escherichia coli gcvR gene encoding a negative regulator of gcv expression. J Bacteriol 177:4980-4984
    • (1995) J Bacteriol , vol.177 , pp. 4980-4984
    • Ghrist, A.C.1    Stauffer, G.V.2
  • 15
    • 0002249458 scopus 로고
    • Regulation of glutamine synthetase in escherichia coli
    • Prusiner S, Stadtman ER (eds) Academic, New York
    • Ginsburg A, Stadtman ER (1973) Regulation of glutamine synthetase in Escherichia coli. In: Prusiner S, Stadtman ER (eds) The enzymes of glutamine metabolism. Academic, New York, pp. 9-43
    • (1973) The Enzymes of Glutamine Metabolism , pp. 9-43
    • Ginsburg, A.1    Stadtman, E.R.2
  • 16
    • 34547137887 scopus 로고    scopus 로고
    • Biocatalytic ketone reduction - A powerful tool for the production of chiral alcohols - Part II: Whole-cell reductions
    • DOI 10.1007/s00253-007-1005-x
    • Goldberg K, Schroer K, Lütz S, Liese A (2007) Biocatalytic ketone reduction - a powerful tool for the production of chiral alcohols - part II: whole-cell reductions. Appl Microbiol Biotechnol 76:249-255 (Pubitemid 47101672)
    • (2007) Applied Microbiology and Biotechnology , vol.76 , Issue.2 , pp. 249-255
    • Goldberg, K.1    Schroer, K.2    Lutz, S.3    Liese, A.4
  • 17
    • 0029127550 scopus 로고
    • Identification of cutC and cutF (nlpE) genes involved in copper tolerance in escherichia coli
    • Gupta SD, Lee BT, Camakaris J, Wu HC (1995) Identification of cutC and cutF (nlpE) genes involved in copper tolerance in Escherichia coli. J Bacteriol 177:4207-4215
    • (1995) J Bacteriol , vol.177 , pp. 4207-4215
    • Gupta, S.D.1    Lee, B.T.2    Camakaris, J.3    Wu, H.C.4
  • 19
    • 0020959710 scopus 로고
    • Studies on transformation of escherichia coli with plasmids
    • Hanahan D (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166:557-580
    • (1983) J Mol Biol , vol.166 , pp. 557-580
    • Hanahan, D.1
  • 20
    • 0345529074 scopus 로고    scopus 로고
    • Responses of the central metabolism in escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts
    • Hua Q, Yang C, Baba T, Mori H, Shimizu K (2003) Responses of the central metabolism in Escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts. J Bacteriol 185:7053-7067
    • (2003) J Bacteriol , vol.185 , pp. 7053-7067
    • Hua, Q.1    Yang, C.2    Baba, T.3    Mori, H.4    Shimizu, K.5
  • 21
    • 0042162924 scopus 로고    scopus 로고
    • The Corynebacterium glutamicum genome: Features and impacts on biotechnological progress
    • Ikeda M, Nakagawa S (2003) The Corynebacterium glutamicum genome: features and impacts on biotechnological progress. Appl Microbiol Biotechnol 62:99-109
    • (2003) Appl Microbiol Biotechnol , vol.62 , pp. 99-109
    • Ikeda, M.1    Nakagawa, S.2
  • 22
    • 33846636385 scopus 로고    scopus 로고
    • Genome-wide screening of genes required for swarming motility in escherichia coli K-12
    • Inoue T, Shingaki R, Hirose S, Waki K, Mori H, Fukui K (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J Bacteriol 189:950-957
    • (2007) J Bacteriol , vol.189 , pp. 950-957
    • Inoue, T.1    Shingaki, R.2    Hirose, S.3    Waki, K.4    Mori, H.5    Fukui, K.6
  • 24
    • 24044464543 scopus 로고    scopus 로고
    • Functional analysis of 1440 escherichia coli genes using the combination of knock-out library and phenotype microarrays
    • Ito M, Baba T, Mori H, Mori H (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab Eng 7:318-327
    • (2005) Metab Eng , vol.7 , pp. 318-327
    • Ito, M.1    Baba, T.2    Mori, H.3    Mori, H.4
  • 26
    • 0031039158 scopus 로고    scopus 로고
    • The Cpx two-component signal transduction pathway is activated in escherichia coli mutant strains lacking phosphatidylethanolamine
    • Mileykovskaya E, Dowhan W (1997) The Cpx two-component signal transduction pathway is activated in Escherichia coli mutant strains lacking phosphatidylethanolamine. J Bacteriol 179:1029-1034
    • (1997) J Bacteriol , vol.179 , pp. 1029-1034
    • Mileykovskaya, E.1    Dowhan, W.2
  • 27
    • 20144378483 scopus 로고    scopus 로고
    • Lipoprotein mutation accelerates substrate permeability-limited toluene dioxygenase-catalyzed reaction
    • Ni Y, Chen RR (2005) Lipoprotein mutation accelerates substrate permeability-limited toluene dioxygenase-catalyzed reaction. Biotechnol Prog 21:799-805
    • (2005) Biotechnol Prog , vol.21 , pp. 799-805
    • Ni, Y.1    Chen, R.R.2
  • 28
    • 47149096184 scopus 로고    scopus 로고
    • A genome-wide approach to identify the genes involved in biofilm formation in E. coli
    • Niba ET, Naka Y, Nagase M, Mori H, Kitakawa M (2008) A genome-wide approach to identify the genes involved in biofilm formation in E. coli. DNA Res 14:237-246
    • (2008) DNA Res , vol.14 , pp. 237-246
    • Niba, E.T.1    Naka, Y.2    Nagase, M.3    Mori, H.4    Kitakawa, M.5
  • 29
    • 78651165715 scopus 로고
    • The carbon monoxide-binding pigment of liver microsomes
    • Omura T, Sato R (1963) The carbon monoxide-binding pigment of liver microsomes. J Biol Chem 239:2370-2378
    • (1963) J Biol Chem , vol.239 , pp. 2370-2378
    • Omura, T.1    Sato, R.2
  • 30
    • 17644369246 scopus 로고    scopus 로고
    • Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in escherichia coli
    • Perrenoud A, Sauer U (2005) Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli. J Bacteriol 187:3171-3179
    • (2005) J Bacteriol , vol.187 , pp. 3171-3179
    • Perrenoud, A.1    Sauer, U.2
  • 32
    • 67649295229 scopus 로고    scopus 로고
    • Improved production of various polyunsaturated fatty acids through filamentous fungus Mortierella alpine breeding
    • Sakuradani E, Ando A, Ogawa J, Shimizu S (2009) Improved production of various polyunsaturated fatty acids through filamentous fungus Mortierella alpine breeding. Appl Microbiol Biotechnol 84:1-10
    • (2009) Appl Microbiol Biotechnol , vol.84 , pp. 1-10
    • Sakuradani, E.1    Ando, A.2    Ogawa, J.3    Shimizu, S.4
  • 33
    • 0028983261 scopus 로고
    • Overproduction of NlpE, a new outer membrane lipoprotein, suppresses the toxicity of periplasmic LacZ by activation of the Cpx signal transduction pathway
    • Snyder WB, Davis LJ, Danese PN, Cosma CL, Silhavy TJ (1995) Overproduction of NlpE, a new outer membrane lipoprotein, suppresses the toxicity of periplasmic LacZ by activation of the Cpx signal transduction pathway. J Bacteriol 177:4216-4223
    • (1995) J Bacteriol , vol.177 , pp. 4216-4223
    • Snyder, W.B.1    Davis, L.J.2    Danese, P.N.3    Cosma, C.L.4    Silhavy, T.J.5
  • 34
    • 0036900263 scopus 로고    scopus 로고
    • The production of fine chemicals by biotransformation
    • Straathof AJ, Panke S, Schimid A (2002) The production of fine chemicals by biotransformation. Curr Opin Biotechnol 13:548-556
    • (2002) Curr Opin Biotechnol , vol.13 , pp. 548-556
    • Straathof, A.J.1    Panke, S.2    Schimid, A.3
  • 36
    • 33846847791 scopus 로고    scopus 로고
    • Transcriptional regulation of the desferrioxamine gene cluster of Streptomyces coelicolor is mediated by binding of DmdR1 to an iron box in the promoter of the desA gene
    • Tunca S, Barreiro C, Sola-Landa A, Coque JJ, Martin JF (2007) Transcriptional regulation of the desferrioxamine gene cluster of Streptomyces coelicolor is mediated by binding of DmdR1 to an iron box in the promoter of the desA gene. FEBS J 274:1110-1122
    • (2007) FEBS J , vol.274 , pp. 1110-1122
    • Tunca, S.1    Barreiro, C.2    Sola-Landa, A.3    Coque, J.J.4    Martin, J.F.5
  • 37
    • 0032728835 scopus 로고    scopus 로고
    • The CpxRA signal transductionsystem of escherichia coli : Growth-related autoactivation and control of unanticipated target operons
    • Wulf PD, Kwon O, Lin ECC (1999) The CpxRA signal transductionsystem of Escherichia coli: growth-related autoactivation and control of unanticipated target operons. J Bacteriol 181:6772-6778
    • (1999) J Bacteriol , vol.181 , pp. 6772-6778
    • Wulf, P.D.1    Kwon, O.2    Lin, E.C.C.3
  • 38
    • 0037135593 scopus 로고    scopus 로고
    • Genome-wide profiling of promoter recognition by the two-component response regulator CpxR-P in escherichia coli
    • Wulf PD, McGuire AM, Liu X, Lin ECC (2002) Genome-wide profiling of promoter recognition by the two-component response regulator CpxR-P in Escherichia coli. J Biol Chem 277:26652-26661
    • (2002) J Biol Chem , vol.277 , pp. 26652-26661
    • Wulf, P.D.1    McGuire, A.M.2    Liu, X.3    Lin, E.C.C.4
  • 39
    • 34547129077 scopus 로고    scopus 로고
    • Improving simvastatin bioconversion in escherichia coli by deletion of bioH
    • Xie X, Wong WW, Tang Y (2007) Improving simvastatin bioconversion in Escherichia coli by deletion of bioH. Metab Eng 9:379-386
    • (2007) Metab Eng , vol.9 , pp. 379-386
    • Xie, X.1    Wong, W.W.2    Tang, Y.3
  • 40
    • 0141504947 scopus 로고    scopus 로고
    • Analysis of escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenol-pyruvate carboxykinase knockout
    • Yang C, Hua Q, Baba T, Mori H, Shimizu K (2003) Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenol-pyruvate carboxykinase knockout. Biotechnol Bioeng 84:129-144
    • (2003) Biotechnol Bioeng , vol.84 , pp. 129-144
    • Yang, C.1    Hua, Q.2    Baba, T.3    Mori, H.4    Shimizu, K.5
  • 41
    • 77952971688 scopus 로고    scopus 로고
    • SCO3900, co-transcripted with three downstream genes, is involved in the differentiation of Streptomyces coelicolor
    • doi:10.1007/s00284-009-9536-2
    • Zhang G, Tian Y, Hu K, Feng C, Tan H (2009) SCO3900, co-transcripted with three downstream genes, is involved in the differentiation of Streptomyces coelicolor. Curr Microbiol. doi:10.1007/s00284-009-9536-2
    • (2009) Curr Microbiol.
    • Zhang, G.1    Tian, Y.2    Hu, K.3    Feng, C.4    Tan, H.5
  • 42
    • 2342565059 scopus 로고    scopus 로고
    • Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate
    • DOI 10.1016/j.ymben.2004.02.004
    • Zhao J, Baba T, Mori H, Shimizu K (2004) Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate. Metab Eng 6:164-174 (Pubitemid 38601069)
    • (2004) Metabolic Engineering , vol.6 , Issue.2 , pp. 164-174
    • Zhao, J.1    Baba, T.2    Mori, H.3    Shimizu, K.4
  • 43
    • 0043032929 scopus 로고    scopus 로고
    • Phenotype microarray analysis of escherichia coli K-12 mutants with deletions of all two component systems
    • Zhou L, Lei XH, Bochner BR, Wanner BL (2003) Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two component systems. J Bacteriol 185:4956-4972
    • (2003) J Bacteriol , vol.185 , pp. 4956-4972
    • Zhou, L.1    Lei, X.H.2    Bochner, B.R.3    Wanner, B.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.