메뉴 건너뛰기




Volumn 12, Issue 2, 2010, Pages 235-245

DNA nanowire translocation phenomena in nanopores

Author keywords

DNA translocation; Electroosmotic flow; Hydrodynamic modeling; Nanopore sequencing

Indexed keywords

DNA SEQUENCING; DNA TRANSLOCATION; DNA VELOCITY; ELECTROKINETIC TRANSPORT; ELECTROOSMOTIC FLOW; EXPERIMENTAL DATA; HYDRODYNAMIC MODEL; IONIC CURRENT; NUMERICAL RESULTS; RESISTIVE FORCES; SOLUTION CONCENTRATION;

EID: 77952891297     PISSN: 13872176     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10544-009-9378-5     Document Type: Article
Times cited : (14)

References (30)
  • 1
    • 0345233357 scopus 로고    scopus 로고
    • Electrokinetic transport of a slender particle through a pore
    • 10.1039/a703398b
    • K Ashoke S Gupta KD Papadopoulos 1997 Electrokinetic transport of a slender particle through a pore J. Chem. Soc. Faraday Trans. 93 20 3695 3701 10.1039/a703398b
    • (1997) J. Chem. Soc. Faraday Trans. , vol.93 , Issue.20 , pp. 3695-3701
    • Ashoke, K.1    Gupta, S.2    Papadopoulos, K.D.3
  • 2
    • 33751414735 scopus 로고    scopus 로고
    • Sequencing single molecules of DNA
    • DOI 10.1016/j.cbpa.2006.10.040, PII S1367593106001815
    • H Bayley 2006 Sequencing single molecules of DNA Curr. Opin. Chem. Biol. 10 628 637 10.1016/j.cbpa.2006.10.040 (Pubitemid 44821904)
    • (2006) Current Opinion in Chemical Biology , vol.10 , Issue.6 , pp. 628-637
    • Bayley, H.1
  • 3
    • 0035855827 scopus 로고    scopus 로고
    • Stochastic sensors inspired by biology
    • DOI 10.1038/35093038
    • H Bayley PS Cremer 2001 Stochastic sensors inspired by biology Nature 413 226 230 10.1038/35093038 (Pubitemid 32867888)
    • (2001) Nature , vol.413 , Issue.6852 , pp. 226-230
    • Bayley, H.1    Cremer, P.S.2
  • 5
    • 36049035070 scopus 로고    scopus 로고
    • Ionic current blockades from DNA and RNA molecules in the α-hemolysin nanopore
    • DOI 10.1529/biophysj.107.107003
    • TZ Butler JH Gundlach M Trolly 2007 Ionic current blockades from DNA and RNA molecules in the a-hemolysin nanopore Biophys. J. 93 3229 3240 10.1529/biophysj.107.107003 (Pubitemid 350097113)
    • (2007) Biophysical Journal , vol.93 , Issue.9 , pp. 3229-3240
    • Butler, T.Z.1    Gundlach, J.H.2    Troll, M.3
  • 6
    • 4444348664 scopus 로고    scopus 로고
    • DNA-mediated fluctuations in ionic current through silicon oxide nanopore channels
    • DOI 10.1021/nl049267c
    • H Chang F Kosari G Andreadakis MA Alam G Vasmatzis R Bashir 2004 DNA-mediated fluctuations in ionic current through silicon oxide nanopore channels Nano Lett. 4 8 1551 1556 10.1021/nl049267c (Pubitemid 39186347)
    • (2004) Nano Letters , vol.4 , Issue.8 , pp. 1551-1556
    • Chang, H.1    Kosari, F.2    Andreadakis, G.3    Alam, M.A.4    Vasmatzis, G.5    Bashir, R.6
  • 7
    • 40349093101 scopus 로고    scopus 로고
    • Electroosmotic flow and particle transport in micro/nano nozzles and diffusers
    • 10.1007/s10544-007-9135-6
    • L Chen AT Conlisk 2008 Electroosmotic flow and particle transport in micro/nano nozzles and diffusers Biomed. Microdevices 10 289 298 10.1007/s10544-007-9135-6
    • (2008) Biomed. Microdevices , vol.10 , pp. 289-298
    • Chen, L.1    Conlisk, A.T.2
  • 8
    • 9644273841 scopus 로고    scopus 로고
    • Probing single DNA molecule transport using fabricated nanopores
    • 10.1021/nl048654j
    • P Chen J Gu E Brandin YR Kim Q Wang D Branton 2004 Probing single DNA molecule transport using fabricated nanopores Nano Lett. 4 11 2293 2298 10.1021/nl048654j
    • (2004) Nano Lett. , vol.4 , Issue.11 , pp. 2293-2298
    • Chen, P.1    Gu, J.2    Brandin, E.3    Kim, Y.R.4    Wang, Q.5    Branton, D.6
  • 9
    • 34547606950 scopus 로고    scopus 로고
    • Simulation study on the translocation of polymer chains through nanopores
    • YC Chen C Wanga MB Luo 2007 Simulation study on the translocation of polymer chains through nanopores J. Chem. Phys. 127 044,904
    • (2007) J. Chem. Phys. , vol.127 , pp. 044
    • Chen, Y.C.1    Wanga, C.2    Luo, M.B.3
  • 10
    • 25844455162 scopus 로고    scopus 로고
    • DMA translocation in inorganic nanotubes
    • DOI 10.1021/nl0509677
    • R Fan R Karnik M Yue D Li A Majumdar P Yang 2005 DNA translocation in inorganic nanotubes Nano Lett. 5 9 1633 1637 10.1021/nl0509677 (Pubitemid 41396138)
    • (2005) Nano Letters , vol.5 , Issue.9 , pp. 1633-1637
    • Fan, R.1    Karnik, R.2    Yue, M.3    Li, D.4    Majumdar, A.5    Yang, P.6
  • 11
    • 34547889925 scopus 로고    scopus 로고
    • Langevin dynamics simulations of ds-DNA translocation through synthetic nanopores
    • DOI 10.1063/1.2746246
    • C Forrey M Muthukumara 2007 Langevin dynamics simulations of ds-DNA translocation through synthetic nanopores J. Chem. Phys. 127 015,102 10.1063/1.2746246 (Pubitemid 47248494)
    • (2007) Journal of Chemical Physics , vol.127 , Issue.1 , pp. 015102
    • Forrey, C.1    Muthukumar, M.2
  • 12
    • 34547219930 scopus 로고    scopus 로고
    • Multiscale coupling of molecular dynamics and hydrodynamics: Application to DNA translocation through a nanopore
    • DOI 10.1137/060660576
    • MG Fyta S Melchionna E Kaxiras S Succi 2006 Multiscale coupling of molecular dynamics and hydrodynamics: application to DNA translocation through a nanopore Multiscale Model. Simul. 5 4 1156 1173 1132.68810 10.1137/060660576 2284097 (Pubitemid 350300982)
    • (2006) Multiscale Modeling and Simulation , vol.5 , Issue.4 , pp. 1156-1173
    • Fyta, M.G.1    Melchionna, S.2    Kaxiras, E.3    Succi, S.4
  • 14
    • 34547339162 scopus 로고    scopus 로고
    • Effect of salt concentration on the electrophoretic speed of a polyelectrolyte through a nanopore
    • DOI 10.1103/PhysRevLett.98.238104
    • S Ghosal 2007 Effect of salt concentration on the electrophoretic speed of a polyelectrolyte through a nanopore Phys. Rev. Lett. 98 238,104 10.1103/PhysRevLett.98.238104 (Pubitemid 47139778)
    • (2007) Physical Review Letters , vol.98 , Issue.23 , pp. 238104
    • Ghosal, S.1
  • 15
    • 37649011024 scopus 로고    scopus 로고
    • Electrokinetic-flow-induced viscous drag on a tethered DNA inside a nanopore
    • 10.1103/PhysRevE.76.061916
    • S Ghosal 2007 Electrokinetic-flow-induced viscous drag on a tethered DNA inside a nanopore Phys. Rev. E 76 61 916 10.1103/PhysRevE.76.061916
    • (2007) Phys. Rev. e , vol.76 , pp. 61-916
    • Ghosal, S.1
  • 16
    • 42749107580 scopus 로고    scopus 로고
    • Anomalous dynamics of forced translocation
    • 10.1103/PhysRevE.69.021806
    • Y Kantor M Kardar 2004 Anomalous dynamics of forced translocation Phys. Rev. E 69 021,806 10.1103/PhysRevE.69.021806
    • (2004) Phys. Rev. e , vol.69 , pp. 021
    • Kantor, Y.1    Kardar, M.2
  • 18
    • 9744225875 scopus 로고    scopus 로고
    • Electrophoresis of a bead-rod chain through a narrow slit: A. Brownian dynamics study
    • 10.1063/1.1804492
    • SH Kim AS Panwar S Kumar KH Ahn SJ Lee 2004 Electrophoresis of a bead-rod chain through a narrow slit: a. Brownian dynamics study J. Chem. Phys. 121 18 9116 9122 10.1063/1.1804492
    • (2004) J. Chem. Phys. , vol.121 , Issue.18 , pp. 9116-9122
    • Kim, S.H.1    Panwar, A.S.2    Kumar, S.3    Ahn, K.H.4    Lee, S.J.5
  • 19
    • 0141955818 scopus 로고    scopus 로고
    • DNA molecules and configurations in a solidstate nanopore microscope
    • 10.1038/nmat965
    • J Li M Gershow D Stein E Brandin JA Golovchenko 2003 DNA molecules and configurations in a solidstate nanopore microscope Nat. Mater. 2 611 615 10.1038/nmat965
    • (2003) Nat. Mater. , vol.2 , pp. 611-615
    • Li, J.1    Gershow, M.2    Stein, D.3    Brandin, E.4    Golovchenko, J.A.5
  • 20
    • 58149402384 scopus 로고    scopus 로고
    • Enhanced translocation of single DNA molecules through α-hemolysin nanopores by manipulation of internal charge
    • 10.1073/pnas.0808296105
    • G Maglia MR Restrepo E Mikhailova H Bayley 2008 Enhanced translocation of single DNA molecules through α-hemolysin nanopores by manipulation of internal charge Proc. Natl. Acad. Sci. 102 50 19720 19725 10.1073/pnas. 0808296105
    • (2008) Proc. Natl. Acad. Sci. , vol.102 , Issue.50 , pp. 19720-19725
    • Maglia, G.1    Restrepo, M.R.2    Mikhailova, E.3    Bayley, H.4
  • 21
    • 0035831563 scopus 로고    scopus 로고
    • Voltage-driven DNA translocations through a nanopore
    • DOI 10.1103/PhysRevLett.86.3435
    • A Meller 2001 Voltage-driven DNA translocations through a nanopore Phys. Rev. Lett. 86 15 3435 3438 10.1103/PhysRevLett.86.3435 (Pubitemid 32380654)
    • (2001) Physical Review Letters , vol.86 , Issue.15 , pp. 3435-3438
    • Meller, A.1    Nivon, L.2    Branton, D.3
  • 22
    • 33846947909 scopus 로고    scopus 로고
    • Threading synthetic polyelectrolytes through protein pores
    • 10.1063/1.2435717
    • RJ Murphy M Muthukumara 2007 Threading synthetic polyelectrolytes through protein pores J. Chem. Phys. 126 051,101 10.1063/1.2435717
    • (2007) J. Chem. Phys. , vol.126 , pp. 051
    • Murphy, R.J.1    Muthukumara, M.2
  • 23
    • 0000102029 scopus 로고    scopus 로고
    • Polymer translocation through a hole
    • 10.1063/1.480386
    • M Muthukumar 1999 Polymer translocation through a hole J. Chem. Phys. 111 12 10371 10374 10.1063/1.480386
    • (1999) J. Chem. Phys. , vol.111 , Issue.12 , pp. 10371-10374
    • Muthukumar, M.1
  • 24
    • 34347237191 scopus 로고    scopus 로고
    • Mechanism of DNA transport through pores
    • DOI 10.1146/annurev.biophys.36.040306.132622
    • M Muthukumar 2007 Mechanism of DNA transport through pores Annu. Rev. Biophys. Biomol. Struct. 36 435 450 10.1146/annurev.biophys.36.040306.132622 (Pubitemid 46998127)
    • (2007) Annual Review of Biophysics and Biomolecular Structure , vol.36 , pp. 435-450
    • Muthukumar, M.1
  • 27
    • 31544471731 scopus 로고    scopus 로고
    • Salt dependence of ion transport and DMA translocation through solid-state nanopores
    • DOI 10.1021/nl052107w
    • RMM Smeets UF Keyser D Krapf MY Wu NH Dekker C Dekker 2006 Salt dependence of ion transport and DNA translocation through solid-state nanopores Nano Lett. 6 1 89 95 10.1021/nl052107w (Pubitemid 43166107)
    • (2006) Nano Letters , vol.6 , Issue.1 , pp. 89-95
    • Smeets, R.M.M.1    Keyser, U.F.2    Krapf, D.3    Wu, M.-Y.4    Dekker, N.H.5    Dekker, C.6
  • 28
    • 0030447720 scopus 로고    scopus 로고
    • Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore
    • DOI 10.1126/science.274.5294.1859
    • L Song MR Hobaugh C Shustak S Cheley H Bayley JE Gouaux 1996 Structure of staphylococcal alpha-hemolysin, a heptameric transmembrane pore Science 274 5294 1859 1865 10.1126/science.274.5294.1859 (Pubitemid 26424757)
    • (1996) Science , vol.274 , Issue.5294 , pp. 1859-1866
    • Song, L.1    Hobaugh, M.R.2    Shustak, C.3    Cheley, S.4    Bayley, H.5    Gouaux, J.E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.