-
1
-
-
0031497043
-
Heterogeneous atomistic-continuum representations for dense fluid systems
-
N. G. HADJICONSTANTINOU AND A. T. PATERA, Heterogeneous atomistic-continuum representations for dense fluid systems, Internat. J. Modern Phys. C, 8 (1997), pp. 967-976.
-
(1997)
Internat. J. Modern Phys. C
, vol.8
, pp. 967-976
-
-
HADJICONSTANTINOU, N.G.1
PATERA, A.T.2
-
2
-
-
0036681558
-
Coupling molecular dynamics and continuum dynamics
-
A. WAGNER, E. FLEKKOY, J. FEDER, AND T. JOSSANQ, Coupling molecular dynamics and continuum dynamics, Comput. Phys. Comm., 147 (2002), pp. 670-673.
-
(2002)
Comput. Phys. Comm
, vol.147
, pp. 670-673
-
-
WAGNER, A.1
FLEKKOY, E.2
FEDER, J.3
JOSSANQ, T.4
-
3
-
-
1542350613
-
A continuum and molecular dynamics hybrid method for micro- and nano-fluid flow
-
X. NIE, S. Y. CHEN, AND W. E, A continuum and molecular dynamics hybrid method for micro- and nano-fluid flow, J. Fluid Mech., 500 (2004), pp. 55-64.
-
(2004)
J. Fluid Mech
, vol.500
, pp. 55-64
-
-
NIE, X.1
CHEN, S.Y.2
-
4
-
-
0037367420
-
Heterogeneous multiscale method: A general methodology for multiscale modeling
-
W. E, B. ENGQUIST, AND Z. Y. HUANG, Heterogeneous multiscale method: A general methodology for multiscale modeling, Phys. Rev. B, 67 (2003), 092101.
-
(2003)
Phys. Rev. B
, vol.67
, pp. 092101
-
-
ENGQUIST, W.E.B.1
HUANG, Z.Y.2
-
5
-
-
0034730149
-
Coarse stability and bifurcation analysis using time-steppers: A reaction-diffusion example
-
C. THEODOROPOULOS, Y. H. QIAN, AND I. KEVREKIDIS, "Coarse" stability and bifurcation analysis using time-steppers: A reaction-diffusion example, Proc. Natl. Acad. Sci. USA, 97 (2000), pp. 9840-9843.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9840-9843
-
-
THEODOROPOULOS, C.1
QIAN, Y.H.2
KEVREKIDIS, I.3
-
6
-
-
13844320326
-
The lattice Boltzmann-equation - Theory and applications
-
R. BENZI, S. SUCCI, AND M. VERGASSOLA, The lattice Boltzmann-equation - Theory and applications, Phys. Rep., 222 (1992), pp. 145-197.
-
(1992)
Phys. Rep
, vol.222
, pp. 145-197
-
-
BENZI, R.1
SUCCI, S.2
VERGASSOLA, M.3
-
9
-
-
25744459324
-
Use of the Boltzmann-equation to simulate lattice-gas automata
-
G. McNAMARA AND G. ZANETTI, Use of the Boltzmann-equation to simulate lattice-gas automata, Phys. Rev. Lett., 61 (1988), pp. 2332-2335.
-
(1988)
Phys. Rev. Lett
, vol.61
, pp. 2332-2335
-
-
McNAMARA, G.1
ZANETTI, G.2
-
10
-
-
84956073211
-
Lattice gas-dynamics with enhanced collisions
-
F. HIGUERA, S. SUCCI, AND R. BENZI, Lattice gas-dynamics with enhanced collisions, Europhys. Lett., 9 (1989), pp. 345-349.
-
(1989)
Europhys. Lett
, vol.9
, pp. 345-349
-
-
HIGUERA, F.1
SUCCI, S.2
BENZI, R.3
-
11
-
-
84945118518
-
Boltzmann approach to lattice gas simulations
-
F. HIGUERA AND J. JIMENEZ, Boltzmann approach to lattice gas simulations, Europhys. Lett., 9 (1989), pp. 663-668.
-
(1989)
Europhys. Lett
, vol.9
, pp. 663-668
-
-
HIGUERA, F.1
JIMENEZ, J.2
-
12
-
-
25344468527
-
Recovery of the Navier-Stokes equations using a lattice-gas Boltzmann method
-
H. CHEN, S. CHEN, AND W. MATTHAEUS, Recovery of the Navier-Stokes equations using a lattice-gas Boltzmann method, Phys. Rev. A (3), 45 (1992), pp. 5339-5342.
-
(1992)
Phys. Rev. A
, vol.45
, Issue.3
, pp. 5339-5342
-
-
CHEN, H.1
CHEN, S.2
MATTHAEUS, W.3
-
13
-
-
84956111432
-
Lattice BGK models for Navier-Stokes equation
-
Rp. 479-484
-
Y. H. QIAN, D. D'HUMIERES, AND P. LALLEMAND, Lattice BGK models for Navier-Stokes equation, Europhys. Lett., 17 (1992), Rp. 479-484.
-
(1992)
Europhys. Lett
, vol.17
-
-
QIAN, Y.H.1
D'HUMIERES, D.2
LALLEMAND, P.3
-
14
-
-
0033546458
-
Perfect entropy functions of the lattice Boltzmann method
-
I. V. KARLIN, A. FERRANTE, AND H. C. OTTINGER, Perfect entropy functions of the lattice Boltzmann method, Europhys. Lett., 47 (1999), pp. 182-188.
-
(1999)
Europhys. Lett
, vol.47
, pp. 182-188
-
-
KARLIN, I.V.1
FERRANTE, A.2
OTTINGER, H.C.3
-
15
-
-
37349020792
-
-
B. BOGHOSIAN, ED., Proceedings of discrete simulation in fluid dynamics 2005, Phys. A, 362 (2006).
-
B. BOGHOSIAN, ED., Proceedings of discrete simulation in fluid dynamics 2005, Phys. A, 362 (2006).
-
-
-
-
16
-
-
0035503363
-
Applying the lattice Boltzmann equation to multiscale fluid problems
-
S. SUCCI, O. FILIPPOVA, G. SMITH, AND E. KAXIRAS, Applying the lattice Boltzmann equation to multiscale fluid problems, Comput. Sci. Engin., 3 (2001), pp. 26-37.
-
(2001)
Comput. Sci. Engin
, vol.3
, pp. 26-37
-
-
SUCCI, S.1
FILIPPOVA, O.2
SMITH, G.3
KAXIRAS, E.4
-
17
-
-
0742285267
-
Simple models for complex nonequilibrium fluids
-
M. KRÖGER, Simple models for complex nonequilibrium fluids, Phys. Rep., 390 (2004), pp. 453-551.
-
(2004)
Phys. Rep
, vol.390
, pp. 453-551
-
-
KRÖGER, M.1
-
18
-
-
0041955442
-
Variance reduced Brownian simulation of a bead-spring chain under steady shear flow considering hydrodynamic interaction effects
-
M. KRÖGER, A. ALBA-ÉREZ, M. LASO, AND H. C. ÖTTINGER, Variance reduced Brownian simulation of a bead-spring chain under steady shear flow considering hydrodynamic interaction effects, J. Chem. Phys., 113 (2000), pp. 4767-4773.
-
(2000)
J. Chem. Phys
, vol.113
, pp. 4767-4773
-
-
KRÖGER, M.1
ALBA-ÉREZ, A.2
LASO, M.3
ÖTTINGER, H.C.4
-
19
-
-
36849103820
-
Role of repulsive forces in determining the equilibrium structure of simple liquids
-
J. D. WEEKS, D. CHANDLER, AND H. C. ANDERSEN, Role of repulsive forces in determining the equilibrium structure of simple liquids, J. Appl. Phys., 54 (1971), pp. 5237-5247.
-
(1971)
J. Appl. Phys
, vol.54
, pp. 5237-5247
-
-
WEEKS, J.D.1
CHANDLER, D.2
ANDERSEN, H.C.3
-
20
-
-
33646940952
-
Numerical integration of cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
J. P. RYCKAERT, G. CICCOTTI, AND H. J. C. BERENDSEN, Numerical integration of cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes, J. Comput. Phys., 23 (1977), pp. 327-341.
-
(1977)
J. Comput. Phys
, vol.23
, pp. 327-341
-
-
RYCKAERT, J.P.1
CICCOTTI, G.2
BERENDSEN, H.J.C.3
-
21
-
-
48749148224
-
Rattle - A velocity version of the SHAKE algorithm for molecular-dynamics calculations
-
H. C. ANDERSEN, Rattle - A velocity version of the SHAKE algorithm for molecular-dynamics calculations, J. Comput. Phys., 52 (1983), pp. 24-34.
-
(1983)
J. Comput. Phys
, vol.52
, pp. 24-34
-
-
ANDERSEN, H.C.1
-
22
-
-
0035538509
-
-
A. J. C. LADD AND R. VERBERG, Lattice-Boltzmann simulations of particle-fluid suspensions, J. Statist. Phys., 104 (2001), pp. 1191-1251.
-
A. J. C. LADD AND R. VERBERG, Lattice-Boltzmann simulations of particle-fluid suspensions, J. Statist. Phys., 104 (2001), pp. 1191-1251.
-
-
-
-
23
-
-
23444456754
-
Fluctuating lattice Boltzmann
-
R. ADHIKARI, K. STRATFORD, M. E. CATES, AND A. J. WAGNER, Fluctuating lattice Boltzmann, Europhys. Lett., 71 (2005), pp. 473-477.
-
(2005)
Europhys. Lett
, vol.71
, pp. 473-477
-
-
ADHIKARI, R.1
STRATFORD, K.2
CATES, M.E.3
WAGNER, A.J.4
-
24
-
-
0141791179
-
Minimal entropic kinetic models for hydrodynamics
-
S. ANSUMALI, I. V. KARLIN, AND H.C. HÖTTINCER, Minimal entropic kinetic models for hydrodynamics, Europhys. Lett., 63 (2003), pp. 798-804.
-
(2003)
Europhys. Lett
, vol.63
, pp. 798-804
-
-
ANSUMALI, S.1
KARLIN, I.V.2
HÖTTINCER, H.C.3
-
25
-
-
30344441149
-
Consistent lattice Boltzmann method
-
S. ANSUMALI AND I. V. KARLIN, Consistent lattice Boltzmann method, Phys. Rev. Lett., 95 (2005), 260605.
-
(2005)
Phys. Rev. Lett
, vol.95
, pp. 260605
-
-
ANSUMALI, S.1
KARLIN, I.V.2
-
26
-
-
0037147531
-
An impulse integrator for Langevin dynamics
-
R. D. SKEEL AND J. A. IZAGUIRRE, An impulse integrator for Langevin dynamics, Mol. Phys., 100 (2002), pp. 3885-3891.
-
(2002)
Mol. Phys
, vol.100
, pp. 3885-3891
-
-
SKEEL, R.D.1
IZAGUIRRE, J.A.2
-
27
-
-
33750535183
-
Numerical integration of projective Hamiltonian dynamics
-
S. MELCHIONNA, Numerical integration of projective Hamiltonian dynamics, Mol. Phys., 104 (2006), pp. 3045-3049.
-
(2006)
Mol. Phys
, vol.104
, pp. 3045-3049
-
-
MELCHIONNA, S.1
-
28
-
-
0000160433
-
Vibrational-relaxation in simple fluids - Comparison of theory and simulations
-
M. TUCKERMAN AND B. BERNE, Vibrational-relaxation in simple fluids - Comparison of theory and simulations, J. Chem. Phys., 98 (1993), pp. 7301-7318.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 7301-7318
-
-
TUCKERMAN, M.1
BERNE, B.2
-
29
-
-
0542402487
-
Lattice-Boltzmann simulation of polymer-solvent systems
-
P. AHLRICHS AND B. DÜNWEG, Lattice-Boltzmann simulation of polymer-solvent systems, Internat. J. Modern Phys. C, 9 (1999), pp. 1429-1438.
-
(1999)
Internat. J. Modern Phys. C
, vol.9
, pp. 1429-1438
-
-
AHLRICHS, P.1
DÜNWEG, B.2
-
30
-
-
0000031708
-
Simulation of a single polymer chain in solution by combining lattice Boltzmann and molecular dynamics
-
P. AHLRICHS AND B. DÜNWEG, Simulation of a single polymer chain in solution by combining lattice Boltzmann and molecular dynamics, J. Chem. Phys., 111 (1999), pp. 8225-8239.
-
(1999)
J. Chem. Phys
, vol.111
, pp. 8225-8239
-
-
AHLRICHS, P.1
DÜNWEG, B.2
-
31
-
-
18844394751
-
Combining molecular dynamics with lattice Boltzmann: A hybrid method for the simulation of (charged) colloidal systems
-
A. CHATTERJI AND J. HORBACH, Combining molecular dynamics with lattice Boltzmann: A hybrid method for the simulation of (charged) colloidal systems, J. Chem. Phys., 122 (2005), 184903.
-
(2005)
J. Chem. Phys
, vol.122
, pp. 184903
-
-
CHATTERJI, A.1
HORBACH, J.2
-
32
-
-
37349090562
-
-
M. DOI AND S. F. EDWARDS, The Theory of Polymer Dynamics, Clarendon, Oxford, UK, 1986.
-
M. DOI AND S. F. EDWARDS, The Theory of Polymer Dynamics, Clarendon, Oxford, UK, 1986.
-
-
-
-
33
-
-
36449008254
-
Molecular dynamics investigation of dynamic scaling for dilute polymer solutions in good solvent conditions
-
C. PIERLEONI AND J.-P. RYCKAERT, Molecular dynamics investigation of dynamic scaling for dilute polymer solutions in good solvent conditions, J. Chem. Phys., 96 (1992), pp. 8539-8551.
-
(1992)
J. Chem. Phys
, vol.96
, pp. 8539-8551
-
-
PIERLEONI, C.1
RYCKAERT, J.-P.2
-
34
-
-
0034301952
-
Excluded volume effects on the structure of a linear polymer under shear flow
-
C. PIERLEONI AND J.-P. RYCKAERT, Excluded volume effects on the structure of a linear polymer under shear flow, J. Chem. Phys., 113 (2000), pp. 5545-5558.
-
(2000)
J. Chem. Phys
, vol.113
, pp. 5545-5558
-
-
PIERLEONI, C.1
RYCKAERT, J.-P.2
-
35
-
-
42749107580
-
Anomalous dynamics of forced translocation
-
Y. KANTOR AND M. KARDAR, Anomalous dynamics of forced translocation, Phys. Rev. E (3), 69 (2004), 021806.
-
(2004)
Phys. Rev. E
, vol.69
, Issue.3
, pp. 021806
-
-
KANTOR, Y.1
KARDAR, M.2
-
36
-
-
33745050016
-
Lattice Boltzmann versus molecular dynamics simulation of nanohydrodynamic flows
-
J. HORBACH AND S. SUCCI, Lattice Boltzmann versus molecular dynamics simulation of nanohydrodynamic flows, Phys. Rev. Lett., 96 (2006), 224503.
-
(2006)
Phys. Rev. Lett
, vol.96
, pp. 224503
-
-
HORBACH, J.1
SUCCI, S.2
-
37
-
-
23144448498
-
Fast DNA translocation through a solid-state nanopore
-
A. J. STORM, C. STORM, J. CHEN, H. ZANDBERGEN, J.-F. JOANNY, AND C. DEKKER, Fast DNA translocation through a solid-state nanopore, Nano Lett., 5 (2005), pp. 1193-1197.
-
(2005)
Nano Lett
, vol.5
, pp. 1193-1197
-
-
STORM, A.J.1
STORM, C.2
CHEN, J.3
ZANDBERGEN, H.4
JOANNY, J.-F.5
DEKKER, C.6
-
38
-
-
0035935306
-
Three-dimensional dynamic Monte Carlo simulations of driven polymer transport through a hole in a wall
-
S. S. CHERN, A. E. CADENAS, AND R. D. COLSON, Three-dimensional dynamic Monte Carlo simulations of driven polymer transport through a hole in a wall, J. Chem. Phys., 115 (2001), pp. 7772-7782.
-
(2001)
J. Chem. Phys
, vol.115
, pp. 7772-7782
-
-
CHERN, S.S.1
CADENAS, A.E.2
COLSON, R.D.3
-
39
-
-
0003422388
-
-
W. H. Freeman, New York
-
H. LODISH, D. BALTIMORE, A. BERK, S. ZIPURSKY, P. MATSUDAIRA, AND J. DARNELL, Molecular Cell Biology, W. H. Freeman, New York, 1996.
-
(1996)
Molecular Cell Biology
-
-
LODISH, H.1
BALTIMORE, D.2
BERK, A.3
ZIPURSKY, S.4
MATSUDAIRA, P.5
DARNELL, J.6
-
40
-
-
0030465241
-
Characterization of individual polynucleotide molecules using a membrane channel
-
J. J. KASIANOWICZ, E. BRANDIN, D. BRANTON, AND D. W. DEAMER, Characterization of individual polynucleotide molecules using a membrane channel, Proc. Nat. Acad. Sci. U.S.A., 93 (1996), pp. 13770-13773.
-
(1996)
Proc. Nat. Acad. Sci. U.S.A
, vol.93
, pp. 13770-13773
-
-
KASIANOWICZ, J.J.1
BRANDIN, E.2
BRANTON, D.3
DEAMER, D.W.4
-
41
-
-
0033980542
-
Rapid nanopore discrimination between single polynucleotide molecules
-
A. MELLER, L. NIVON, E. BRANDIN, J. GOLOVCHENKO, AND D. BRANTON, Rapid nanopore discrimination between single polynucleotide molecules, Proc. Natl. Acad. Sci. USA, 97 (2000), pp. 1079-1084.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 1079-1084
-
-
MELLER, A.1
NIVON, L.2
BRANDIN, E.3
GOLOVCHENKO, J.4
BRANTON, D.5
-
42
-
-
6144254211
-
-
W. SUNG AND P. J. PARK, Polymer translocation through a pore in a membrane, Phys. Rev. Lett., 77 (1996), pp. 783-786.
-
W. SUNG AND P. J. PARK, Polymer translocation through a pore in a membrane, Phys. Rev. Lett., 77 (1996), pp. 783-786.
-
-
-
-
43
-
-
33645150902
-
Dynamics of polymer translocation through nanopores: Theory meets experiment
-
S. MATYSIAK, A. MONTESI, M. PASQUALI, A. B. KOLOMEISKY, AND C. CLEMENTI, Dynamics of polymer translocation through nanopores: Theory meets experiment, Phys. Rev. Lett., 96 (2006), 118103.
-
(2006)
Phys. Rev. Lett
, vol.96
, pp. 118103
-
-
MATYSIAK, S.1
MONTESI, A.2
PASQUALI, M.3
KOLOMEISKY, A.B.4
CLEMENTI, C.5
-
44
-
-
0032845645
-
Driven polymer translocation through a narrow pore
-
D. K. LUBENSKY AND D. R. NELSON, Driven polymer translocation through a narrow pore, Biophys. J., 77 (1999), pp. 1824-1838.
-
(1999)
Biophys. J
, vol.77
, pp. 1824-1838
-
-
LUBENSKY, D.K.1
NELSON, D.R.2
-
45
-
-
22244483736
-
DNA packaging in bacteriophage: Is twist important?
-
A. J. SPAKOWITZ AND Z.-G. WANG, DNA packaging in bacteriophage: Is twist important?, Biophys. J., 88 (2005), pp. 3912-3923.
-
(2005)
Biophys. J
, vol.88
, pp. 3912-3923
-
-
SPAKOWITZ, A.J.1
WANG, Z.-G.2
-
46
-
-
33745759318
-
Langevin dynamics simulations of genome packing in bacteriophage
-
C. FORREY AND M. MUTHUKUMAR, Langevin dynamics simulations of genome packing in bacteriophage, Biophys. J., 91 (2006), pp. 25-41.
-
(2006)
Biophys. J
, vol.91
, pp. 25-41
-
-
FORREY, C.1
MUTHUKUMAR, M.2
-
47
-
-
1842368477
-
Single polymer dynamics in an elongational flow
-
T. T. PERKINS, D. E. SMITH, AND S. CHU, Single polymer dynamics in an elongational flow, Science, 276 (1997), pp. 2016-2021.
-
(1997)
Science
, vol.276
, pp. 2016-2021
-
-
PERKINS, T.T.1
SMITH, D.E.2
CHU, S.3
-
48
-
-
0034215740
-
Brownian dynamics simulations of single DNA molecules in shear flow
-
J. S. HUR, E. S. G. SHAQFEH, AND R. G. LARSON, Brownian dynamics simulations of single DNA molecules in shear flow, J. Rheol., 44 (2000), pp. 713-742.
-
(2000)
J. Rheol
, vol.44
, pp. 713-742
-
-
HUR, J.S.1
SHAQFEH, E.S.G.2
LARSON, R.G.3
-
49
-
-
0036571979
-
Stochastic simulations of DNA in flow: Dynamics and the effects of hydrodynamic interactions
-
R. M. JENDREJACK, J. J. DE PABLO, AND M. D. GRAHAM, Stochastic simulations of DNA in flow: Dynamics and the effects of hydrodynamic interactions, J. Chem. Phys., 116 (2002), pp. 7752-7759.
-
(2002)
J. Chem. Phys
, vol.116
, pp. 7752-7759
-
-
JENDREJACK, R.M.1
DE PABLO, J.J.2
GRAHAM, M.D.3
|