Inter-specific gene flow dynamics during the Pleistocene-dated speciation of forest-dependent mosquitoes in Southeast Asia

Molecular Ecology

Volumn 19, Issue 11, 2010, Pages 2269-2285

  Morgan, Katy ^a   Linton, Yvonne Marie ^b   Somboon, Pradya ^c   Saikia, Prasanta ^d   Dev, Vas ^e   Socheat, Duong ^f   Walton, Catherine ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^c Faculty of Medicine Chiang Mai University   (Thailand)

^d GAUHATI UNIVERSITY   (India)

^e NATIONAL INSTITUTE OF MALARIA RESEARCH   (India)

^f National Center for Parasitology Entomology and Malaria Control   (Cambodia)

Author keywords

Anopheles; Isolation with migration; Malaria; Phylogeography; Southeast Asia; Speciation

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ANIMAL; ANOPHELES; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; GENE; GENE FLOW; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; MOLECULAR EVOLUTION; POPULATION DENSITY; SOUTHEAST ASIA; SPECIES DIFFERENCE; SPECIES DIFFERENTIATION;

ANIMALS; ANOPHELES; ASIA, SOUTHEASTERN; BAYES THEOREM; CELL NUCLEUS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENE FLOW; GENES, INSECT; GENETIC SPECIATION; GENETIC VARIATION; HAPLOTYPES; MICROSATELLITE REPEATS; MODELS, GENETIC; POPULATION DENSITY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

ANOPHELES DIRUS; DIRUS SPECIES COMPLEX;

EID: 77952716372     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2010.04635.x     Document Type: Article

References (64)

1. Baimai V, Andre RG, Harrison BA, Kijchalao U, Panthusiri L (1987) Crossing and chromosomal evidence for 2 additional sibling species within the taxon Anopheles-Dirus Peyton and Harrison (Diptera, Culicidae) in Thailand. Proceedings of the Entomological Society of Washington, 89, 157 166.
2. Baimai V, Kijchalao U, Sawadwongporn P, Green CA (1988a) Geographic distribution and biting behaviour of four species of the Anopheles dirus complex (Diptera: Culicidae) in Thailand. The Southeast Asian Journal of Tropical Medicine and Public Health, 19, 151 161.
3. Baimai V, Poopittayasataporn A, Kuchalao U (1988b) Cytological differences and chromosomal rearrangements in four members of the Anopheles dirus complex (Diptera: Culicidae). Genome, 30, 372 379.
4. Baimai V, Thu MM, Paing M, Maheswary NP (1988c) Distribution and chromosomal polymorphism of the malaria vector Anopheles dirus species D. Southeast Asian Journal of Tropical and Medical Public Health, 19, 661 665.
5. Bandelt H-J, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37 48.
6. Bazin E, Glemin S, Galtier N (2006) Population size does not influence mitochondrial genetic diversity in animals. Science, 312, 570 572.
7. Bell KL, Moritz C, Moussalli A, Yeates DK (2007) Comparative phylogeography and speciation of dung beetles from the Australian Wet Tropics rainforest. Molecular Ecology, 16, 4984 4998.
8. Bird MI, Taylor D, Hunt C (2005) Palaeoenvironments of insular Southeast Asia during the Last Glacial Period: a savanna corridor in Sundaland? Quaternary Science Reviews, 24, 2228 2242.
9. Brower A (1994) Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proceedings of the National Academy of Sciences, USA, 91, 6491 6495.
10. Bruen TC, Philippe H, Bryant D (2006) A simple and robust statistical test to detect the presence of recombination. Genetics, 172, 2665 2681.
11. Bull V, Beltran M, Jiggins C et al. (2006) Polyphyly and gene flow between non-sibling Heliconius species. BMC Biology, 4, 11.
12. Carling MD, Brumfield RT (2008) Integrating phylogenetic and population genetic analyses of multiple loci to test species divergence hypotheses in Passerina buntings. Genetics, 178, 363 377.
13. Charlesworth D, Charlesworth B, Morgan MT (1995) The pattern of neutral molecular variation under the background selection model. Genetics, 141, 1619 1632.
14. Coyne JA, Orr HA (2004) Speciation. Sinauer Associates
15. Excoffier LGL, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
16. Green CA, Munstermann LE, Tan SG, Panyim S, Baimai V (1992) Population genetic evidence for species A, B, C and D of the Anopheles dirus complex in Thailand and enzyme electromorphs for their identification. Medical and Veterinary Entomology, 6, 29 36.
17. Heaney LR (1991) A synopsis of climatic and vegetational change in Southeast Asia. Climatic Change, 19, 53 61.
18. Hendry AP, Nosil P, Rieseberg LH (2007) The speed of ecological speciation. Functional Ecology, 21, 455 464.
19. Hewitt GM (2004) Genetic consequences of climatic oscillations in the Quaternary. Proceedings of the Royal Society B: Biological Sciences, 359, 183 195.
20. Hey J (2006) Recent advances in assessing gene flow between diverging populations and species. Current Opinion in Genetics & Development, 16, 592 596.
21. Hey J, Nielsen R (2004) Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics, 167, 747 760.
22. Hey J, Nielsen R (2007) Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proceedings of the National Academy of Sciences, USA, 104, 2785 2790.
23. Holt RA, Subramanian GM, Halpern A et al. (2002) The genome sequence of the malaria mosquito Anopheles gambiae. Science, 298, 129 149.
24. Hope G, Kershaw AP, van der Kaars S et al. (2004) History of vegetation and habitat change in the Austral-Asian region. Quaternary International, 118, 119, 103 126.
25. Hugall A, Moritz C, Mousalli A, Stanisic J (2002) Reconciling paleodistribution models and comparative phylogeography in the Wet Tropics rainforest land snail Gnarosophia bellendenkerensis. Proceedings of the National Academy of Sciences, USA, 99, 6112 6117.
26. Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23, 254 267.
27. Kershaw AP (1994) Pleistocene vegetation of the humid tropics of northeastern Queensland, Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, 109, 399 412.
28. Knowles LL (2000) Tests of Pleistocene speciation in montane grasshoppers (Genus Melanopus) from the sky islands of western North America. Evolution, 54, 1337 1348.
29. Kotlik P, Markova S, Choleva L et al. (2008) Divergence with gene flow between Ponto-Caspian refugia in an anadromous cyprinid Rutilus frisii revealed by multiple gene phylogeography. Molecular Ecology, 17, 1076 1088.
30. Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451 1452.
31. Lowry DB, Modliszewski JL, Wright KM, Wu CA, Willis JH (2008) The strength and genetic basis of reproductive isolating barriers in flowering plants. Philosophical Transactions of the Royal Society of London B, Biological Sciences, 363, 3009 3021.
32. Machado CA, Kliman RM, Markert JA, Hey J (2002) Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. Molecular Biology and Evolution, 19, 472 488.
33. Maddison WP, Knowles LL (2006) Inferring phylogeny despite incomplete lineage sorting. Systematic Biology, 55, 21 30.
34. Maharaj R (2003) Life table characteristics of Anopheles arabiensis (Diptera: Culicidae) under simulated seasonal conditions. Journal of Medical Entomology, 40, 737 742.
35. Martinez-Cruz B, Godoy J (2007) Genetic evidence for a recent divergence and subsequent gene flow between Spanish and Eastern imperial eagles. BMC Evolutionary Biology, 7, 170.
36. McGuire G, Wright F (2000) TOPAL 2.0: improved detection of mosaic sequences within multiple alignments. Bioinformatics, 16, 130 134.
37. Milne I, Lindner D, Bayer M et al. (2009) TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics, 25, 126 127.
38. Morgan K, O'Loughlin SM, Mun-Yik F et al. (2009) Molecular phylogenetics and biogeography of the Neocellia Series of Anopheles mosquitoes in the Oriental Region. Molecular Phylogenetics and Evolution, 52, 588 601.
39. Moritz C, Patton JL, Schneider CJ, Smith TB (2000) Diversification of rainforest faunas: an integrated molecular approach. Annual Review of Ecology and Systematics, 31, 533 563.
40. Moritz C, Hoskin CJ, MacKenzie JB et al. (2009) Identification and dynamics of a cryptic suture zone in tropical rainforest. Proceedings of the Royal Society B: Biological Sciences, 276, 1235 1244.
41. Moriyama EN, Gojobori T (1992) Rates of synonymous substitution and base composition of nuclear genes in Drosophila. Genetics, 130, 855 864.
42. Nielsen R, Wakeley J (2001) Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics, 158, 885 896.
43. Nosil P (2008) Speciation with gene flow could be common. Molecular Ecology, 17, 2103 2106.
44. Nosil P., Harmen L.J., Seehausen O. (2009) Ecological explanations for (incomplete) selection. Trends in Ecology and Evolution, 24, 145 156.
45. O'Loughlin SM, Somboon P, Walton C (2007) High levels of population structure caused by habitat islands in the malarial vector Anopheles scanloni. Heredity, 99, 31 40.
46. O'Loughlin SM, Okabayashi T, Honda M et al. (2008) Complex population history of two Anopheles dirus mosquito species in Southeast Asia suggests the influence of Pleistocene climate change rather than human-mediated effects. Journal of Evolutionary Biology, 21, 1555 1569.
47. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
48. Ptak SE, Przeworski M (2002) Evidence for population growth in humans is confounded by fine-scale population structure. Trends in Genetics, 18, 559 563.
49. Reid JA (1968) Anopheline Mosquitoes of Malaya and Borneo. Government of Malaysia
50. Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology, 132, 365 386.
51. Rull V (2008) Speciation timing and neotropical biodiversity: The Tertiary-Quaternary debate in the light of molecular phylogenetic evidence. Molecular Ecology, 17, 2722 2729.
52. Sallum MAM, Peyton EL, Harrison BA, Wilkerson RC (2005) Revision of the Leucosphyrus group of Anopheles (Cellia) (Diptera, Culicidae). Revista Brasileira de Entomologia, 49 (Suppl. 1 1 152.
53. Sawadipanich Y, Baimai V, Harrison BA (1990) Anopheles dirus species E: chromosomal and crossing evidence for another member of the Dirus complex. Journal of the American Mosquito Control Association, 6, 477 481.
54. Schug MD, Hutter CM, Wetterstrand KA et al. (1998) The mutation rates of di-, tri- and tetranucleotide repeats in Drosophila melanogaster. Molecular Biology and Evolution, 15, 1751 1760.
55. Stephens M, Smith N, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978 989.
56. Strasburg JL, Rieseberg LH (2010) How robust are "isolation with migration" analyses to violations of the IM model? A simulation study. Molecular Biology and Evolution, 27, 297 310.
57. Takami Y, Nagata N, Sasabe M, Sota T (2007) Asymmetry in reproductive isolation and its effect on directional mitochondrial introgression in the parapatric ground beetles Carabus yamato and C. albrechti. Population Ecology, 49, 337 346.
58. Thompson J, Gibson T, Plewniak F, Jeanmougin F, Higgins D (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876 4882.
59. Walton C, Handley JM, Kuvangkadilok C et al. (1999) Identification of five species of the Anopheles dirus complex from Thailand, using allele-specific polymerase chain reaction. Medical and Veterinary Entomology, 13, 24 32.
60. Walton C, Handley JM, Tun-Lin W et al. (2000) Population structure and population history of Anopheles dirus mosquitoes in southeast Asia. Molecular Biology and Evolution, 17, 962 974.
61. Walton C, Handley JM, Collins FH et al. (2001) Genetic population structure and introgression in Anopheles dirus mosquitoes in South-east Asia. Molecular Ecology, 10, 569 580.
62. Weir JT (2006) Divergent timing and patterns of species accumulation in lowland and highland Neotropical birds. Evolution, 60, 842 855.
63. White JC, Penny D, Kealhofer L, Maloney B (2004) Vegetation changes from the late Pleistocene through the Holocene from three areas of archaeological significance in Thailand. Quaternary International: The Record of Human/Climate Interaction in Lake Sediments, 113, 111 132.
64. Zink RM, Slowinski JB (1995) Evidence from molecular systematics for decreased avian diversification in the pleistocene Epoch. Proceedings of the National Academy of Sciences, USA, 92, 5832 5835.