-
2
-
-
58149261913
-
The phytochrome red/far-red photoreceptor superfamily
-
Sharrock RA (2008) The phytochrome red/far-red photoreceptor superfamily. Genome Biol 9:230.
-
(2008)
Genome Biol
, vol.9
, pp. 230
-
-
Sharrock, R.A.1
-
3
-
-
10644231202
-
The phytochromes: Spectroscopy and function
-
Photoreceptors and Light Signaling, ed Batschauer A Royal Society of Chemistry, Cambridge, UK
-
Gä rtner W, Braslavsky SE (2003) The phytochromes: Spectroscopy and function. Photoreceptors and Light Signaling , Comprehensive Series in Photochemical and Photo-biological Sciences, ed Batschauer A (Royal Society of Chemistry, Cambridge, UK), Vol 3, pp 136-180.
-
(2003)
Comprehensive Series in Photochemical and Photo-biological Sciences
, vol.3
, pp. 136-180
-
-
Gä rtner, W.1
Braslavsky, S.E.2
-
4
-
-
84920161673
-
Structure, function, and evolution of microbial phytochromes
-
eds Schäfer E, Nagy F Springer, Dordrecht, The Netherlands, 3rd Ed, pp
-
Karniol B, Vierstra RD (2005) Structure, function, and evolution of microbial phytochromes. Photomorphogenesis in Plants and Bacteria: Function and Signal Transduction Mechanisms , eds Schäfer E, Nagy F (Springer, Dordrecht, The Netherlands), 3rd Ed, pp 65-98.
-
(2005)
Photomorphogenesis in Plants and Bacteria: Function and Signal Transduction Mechanisms
, pp. 65-98
-
-
Karniol, B.1
Vierstra, R.D.2
-
5
-
-
0036676141
-
Phytochrome ancestry: Sensors of bilins and light
-
Montgomery BL, Lagarias JC (2002) Phytochrome ancestry: Sensors of bilins and light. Trends Plant Sci 7:357-366.
-
(2002)
Trends Plant Sci
, vol.7
, pp. 357-366
-
-
Montgomery, B.L.1
Lagarias, J.C.2
-
6
-
-
27844461604
-
A light-sensing knot revealed by the structure of the chromophore binding domain of phytochrome
-
Wagner JR, Brunzelle JS, Forest KT, Vierstra RD (2005) A light-sensing knot revealed by the structure of the chromophore binding domain of phytochrome. Nature 438:325-331.
-
(2005)
Nature
, vol.438
, pp. 325-331
-
-
Wagner, J.R.1
Brunzelle, J.S.2
Forest, K.T.3
Vierstra, R.D.4
-
7
-
-
4344699140
-
Evolution of cyanobacterial and plant phytochromes
-
Lamparter T (2004) Evolution of cyanobacterial and plant phytochromes. FEBS Lett 573:1-5.
-
(2004)
FEBS Lett
, vol.573
, pp. 1-5
-
-
Lamparter, T.1
-
8
-
-
34249728355
-
High-resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution
-
Wagner JR, Zhang J, Brunzelle JS, Vierstra RD, Forest KT (2007) High-resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution. J Biol Chem 282:12298-12309.
-
(2007)
J Biol Chem
, vol.282
, pp. 12298-12309
-
-
Wagner, J.R.1
Zhang, J.2
Brunzelle, J.S.3
Vierstra, R.D.4
Forest, K.T.5
-
9
-
-
0037046559
-
Bacteriophytochrome controls photosystem synthesis in anoxy-genic bacteria
-
Giraud E, et al. (2002) Bacteriophytochrome controls photosystem synthesis in anoxy-genic bacteria. Nature 417:202-205.
-
(2002)
Nature
, vol.417
, pp. 202-205
-
-
Giraud, E.1
-
10
-
-
0037418282
-
The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties
-
Karniol B, Vierstra RD (2003) The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties. Proc Natl Acad Sci USA 100:2807-2812.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 2807-2812
-
-
Karniol, B.1
Vierstra, R.D.2
-
11
-
-
17444391234
-
Biochemical and spectroscopic characterization of the bacterial phytochrome of Pseudomonas aeruginosa
-
Tasler R, Moises T, Frankenberg-Dinkel N (2005) Biochemical and spectroscopic characterization of the bacterial phytochrome of Pseudomonas aeruginosa. FEBS J 272:1927-1936.
-
(2005)
FEBS J
, vol.272
, pp. 1927-1936
-
-
Tasler, R.1
Moises, T.2
Frankenberg-Dinkel, N.3
-
12
-
-
25444438210
-
A new type of bacteriophytochrome acts in tandem with a classical bacteriophytochrome to control the antennae synthesis in Rhodopseudomo-nas palustris
-
Giraud E, et al. (2005) A new type of bacteriophytochrome acts in tandem with a classical bacteriophytochrome to control the antennae synthesis in Rhodopseudomo-nas palustris. J Biol Chem 280:32389-32397.
-
(2005)
J Biol Chem
, vol.280
, pp. 32389-32397
-
-
Giraud, E.1
-
13
-
-
34147190729
-
A singular bacteriophytochrome acquired by lateral gene transfer
-
Jaubert M, et al. (2007) A singular bacteriophytochrome acquired by lateral gene transfer. J Biol Chem 282:7320-7328.
-
(2007)
J Biol Chem
, vol.282
, pp. 7320-7328
-
-
Jaubert, M.1
-
14
-
-
0030865349
-
A cyanobacterial phytochrome two-component light sensory system
-
Yeh K-C, Wu S-H, Murphy JT, Lagarias JC (1997) A cyanobacterial phytochrome two-component light sensory system. Science 277:1505-1508.
-
(1997)
Science
, vol.277
, pp. 1505-1508
-
-
Yeh, K.-C.1
Wu, S.-H.2
Murphy, J.T.3
Lagarias, J.C.4
-
15
-
-
0035856979
-
Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore
-
Bhoo SH, Davis SJ, Walker J, Karniol B, Vierstra RD (2001) Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore. Nature 414:776-779.
-
(2001)
Nature
, vol.414
, pp. 776-779
-
-
Bhoo, S.H.1
Davis, S.J.2
Walker, J.3
Karniol, B.4
Vierstra, R.D.5
-
16
-
-
34547628072
-
Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion
-
Yang X, Stojkovic EA, Kuk J, Moffat K (2007) Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion. Proc Natl Acad Sci USA 104:12571-12576.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12571-12576
-
-
Yang, X.1
Stojkovic, E.A.2
Kuk, J.3
Moffat, K.4
-
17
-
-
55749108535
-
The structure of a complete phytochrome sensory module in the Pr ground state
-
Essen LO, Mailliet J, Hughes J (2008) The structure of a complete phytochrome sensory module in the Pr ground state. Proc Natl Acad Sci USA 105:14709-14714.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 14709-14714
-
-
Essen, L.O.1
Mailliet, J.2
Hughes, J.3
-
18
-
-
55749108880
-
Crystal structure of Pseudomonas aeruginosa bacte-riophytochrome: Photoconversion and signal transduction
-
Yang X, Kuk J, Moffat K (2008) Crystal structure of Pseudomonas aeruginosa bacte-riophytochrome: Photoconversion and signal transduction. Proc Natl Acad Sci USA 105:14715-14720.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 14715-14720
-
-
Yang, X.1
Kuk, J.2
Moffat, K.3
-
19
-
-
0025228693
-
Refined 3-dimensional structure of phycoerythrocyanin from the cyanobacterium Mastigocladus laminosus at 2.7 Å
-
Duerring M, Huber R, Bode W, Ruembeli R, Zuber H (1990) Refined 3-dimensional structure of phycoerythrocyanin from the cyanobacterium Mastigocladus laminosus at 2.7 Å. J Mol Biol 211:633-644.
-
(1990)
J Mol Biol
, vol.211
, pp. 633-644
-
-
Duerring, M.1
Huber, R.2
Bode, W.3
Ruembeli, R.4
Zuber, H.5
-
20
-
-
0025967561
-
Isolation, crystallization, crystal structure analysis, and refinement of constitutive C-phycocyanin from the chromatically adapting cyanobac-terium Fremyella diplosiphon at 1.66-Å resolution
-
Duerring M, Schmidt GB, Huber R (1991) Isolation, crystallization, crystal structure analysis, and refinement of constitutive C-phycocyanin from the chromatically adapting cyanobac-terium Fremyella diplosiphon at 1.66-Å resolution. J Mol Biol 217:577-592.
-
(1991)
J Mol Biol
, vol.217
, pp. 577-592
-
-
Duerring, M.1
Schmidt, G.B.2
Huber, R.3
-
22
-
-
46849086738
-
A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynecho-coccus elongatus
-
Rockwell NC, et al. (2008) A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynecho-coccus elongatus. Biochemistry 47:7304-7316.
-
(2008)
Biochemistry
, vol.47
, pp. 7304-7316
-
-
Rockwell, N.C.1
-
23
-
-
0021112551
-
Structure-function studies on phytochrome: Preliminary characterization of highly purified phytochrome from Avena sativa enriched in the 124-kDa species
-
Litts JC, Kelly JM, Lagarias JC (1983) Structure-function studies on phytochrome: Preliminary characterization of highly purified phytochrome from Avena sativa enriched in the 124-kDa species. J Biol Chem 258:11025-11031.
-
(1983)
J Biol Chem
, vol.258
, pp. 11025-11031
-
-
Litts, J.C.1
Kelly, J.M.2
Lagarias, J.C.3
-
24
-
-
0344928455
-
Mechanism of Cph1 phytochrome assembly from stopped-flow kinetics and circular dichroism
-
Borucki B, et al. (2003) Mechanism of Cph1 phytochrome assembly from stopped-flow kinetics and circular dichroism. Biochemistry 42:13684-13697.
-
(2003)
Biochemistry
, vol.42
, pp. 13684-13697
-
-
Borucki, B.1
-
25
-
-
36049048341
-
Locked 5Zs-biliverdin blocks the Meta-Ra to Meta-Rc transition in the functional cycle of bacteriophytochrome Agp1
-
Seibeck S, et al. (2007) Locked 5Zs-biliverdin blocks the Meta-Ra to Meta-Rc transition in the functional cycle of bacteriophytochrome Agp1. FEBS Lett 581:5425-5429.
-
(2007)
FEBS Lett
, vol.581
, pp. 5425-5429
-
-
Seibeck, S.1
-
26
-
-
10644265997
-
Harnessing phytochrome's glowing potential
-
Fischer AJ, Lagarias JC (2004) Harnessing phytochrome's glowing potential. Proc Natl Acad Sci USA 101:17334-17339.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 17334-17339
-
-
Fischer, A.J.1
Lagarias, J.C.2
-
27
-
-
27944447344
-
Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes
-
Fischer AJ, et al. (2005) Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes. Biochemistry 44:15203-15215.
-
(2005)
Biochemistry
, vol.44
, pp. 15203-15215
-
-
Fischer, A.J.1
-
28
-
-
34548309457
-
Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants
-
Su YS, Lagarias JC (2007) Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants. Plant Cell 19:2124-2139.
-
(2007)
Plant Cell
, vol.19
, pp. 2124-2139
-
-
Su, Y.S.1
Lagarias, J.C.2
-
29
-
-
45549107695
-
Mutational analysis of Deinococcus radiodurans bacteriophy-tochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes
-
Wagner JR, et al. (2008) Mutational analysis of Deinococcus radiodurans bacteriophy-tochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes. J Biol Chem 283:12212-12226.
-
(2008)
J Biol Chem
, vol.283
, pp. 12212-12226
-
-
Wagner, J.R.1
-
30
-
-
0028967604
-
Type I and type II reversible photochemistry of phycoeryth-rocyanin β -subunit from Mastigocladus laminosus both involve Z, E isomerization of phycoviolobilin chromophore and are controlled by sulfhydryls in apoprotein
-
Zhao KH, Scheer H (1995) Type I and type II reversible photochemistry of phycoeryth-rocyanin β -subunit from Mastigocladus laminosus both involve Z, E isomerization of phycoviolobilin chromophore and are controlled by sulfhydryls in apoprotein. Biochim Biophys Acta Bioenerg 1228:244-253.
-
(1995)
Biochim Biophys Acta Bioenerg
, vol.1228
, pp. 244-253
-
-
Zhao, K.H.1
Scheer, H.2
-
31
-
-
33846303582
-
Structural basis for the photochemistry of β -phycoerythrocyanin
-
Schmidt M, Patel A, Zhao Y, Reuter W (2007) Structural basis for the photochemistry of β -phycoerythrocyanin. Biochemistry 46:416-423.
-
(2007)
Biochemistry
, vol.46
, pp. 416-423
-
-
Schmidt, M.1
Patel, A.2
Zhao, Y.3
Reuter, W.4
-
32
-
-
0001285005
-
Bile pigments: Bilatrienes and 5,15-biladienes
-
ed Dolphin D Academic, New York
-
McDonagh AF (1979) Bile pigments: Bilatrienes and 5,15-biladienes. The Porphyrins , ed Dolphin D (Academic, New York), Vol VI, pp 293-491.
-
(1979)
The Porphyrins
, vol.6
, pp. 293-491
-
-
McDonagh, A.F.1
-
33
-
-
0024279594
-
In vitro attachment of bilins to apophyco-cyanin. I. Specific covalent adduct formation at cysteinyl residues involved in phyco-cyanobilin binding in C-phycocyanin
-
Arciero DM, Bryant DA, Glazer AN (1988) In vitro attachment of bilins to apophyco-cyanin. I. Specific covalent adduct formation at cysteinyl residues involved in phyco-cyanobilin binding in C-phycocyanin. J Biol Chem 263:18343-18349.
-
(1988)
J Biol Chem
, vol.263
, pp. 18343-18349
-
-
Arciero, D.M.1
Bryant, D.A.2
Glazer, A.N.3
-
34
-
-
0024961645
-
Phytochrome chromophore biosynthesis. Treatment of tetrapyrrole-deficient Avena explants with natural and non-natural bilatrienes leads to formation of spectrally active holoproteins
-
Elich TD, McDonagh AF, Palma LA, Lagarias JC (1989) Phytochrome chromophore biosynthesis. Treatment of tetrapyrrole-deficient Avena explants with natural and non-natural bilatrienes leads to formation of spectrally active holoproteins. J Biol Chem 264:183-189.
-
(1989)
J Biol Chem
, vol.264
, pp. 183-189
-
-
Elich, T.D.1
McDonagh, A.F.2
Palma, L.A.3
Lagarias, J.C.4
-
35
-
-
0035845489
-
Genetic engineering of phytochrome biosynthesis in bacteria
-
Gambetta GA, Lagarias JC (2001) Genetic engineering of phytochrome biosynthesis in bacteria. Proc Natl Acad Sci USA 98:10566-10571.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10566-10571
-
-
Gambetta, G.A.1
Lagarias, J.C.2
-
36
-
-
0035845538
-
Biosynthesis of a fluorescent cyanobacterial C-phycocyanin holo-β subunit in a heterologous host
-
Tooley AJ, Cai YA, Glazer AN (2001) Biosynthesis of a fluorescent cyanobacterial C-phycocyanin holo-β subunit in a heterologous host. Proc Natl Acad Sci USA 98:10560-10565.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10560-10565
-
-
Tooley, A.J.1
Cai, Y.A.2
Glazer, A.N.3
-
37
-
-
84893169025
-
General atomic and molecular electronic structure system
-
Schmidt MW, et al. (1993) General atomic and molecular electronic structure system. J Comput Chem 14:1347-1363.
-
(1993)
J Comput Chem
, vol.14
, pp. 1347-1363
-
-
Schmidt, M.W.1
-
38
-
-
0032216489
-
MacMolPlt: A graphical user interface for GAMESS
-
Bode BM, Gordon MS (1998) MacMolPlt: A graphical user interface for GAMESS. J Mol Graphics Model 16:133-138.
-
(1998)
J Mol Graphics Model
, vol.16
, pp. 133-138
-
-
Bode, B.M.1
Gordon, M.S.2
|