-
1
-
-
0035358814
-
Random-peptide libraries and antigen-fragment libraries for epitope mapping and the development of vaccines and diagnostics
-
11479124
-
Random-peptide libraries and antigen-fragment libraries for epitope mapping and the development of vaccines and diagnostics. MB Irving O Pan JK Scott, Current Opinion in Chemical Biology 2001 5 3 314 324 11479124
-
(2001)
Current Opinion in Chemical Biology
, vol.5
, Issue.3
, pp. 314-324
-
-
Irving, M.B.1
Pan, O.2
Scott, J.K.3
-
2
-
-
0011788896
-
Immunological speculations
-
13789973
-
Immunological speculations. NK Jerne, Annu. Rev. Microbiol. 1960 14 341 358 13789973
-
(1960)
Annu. Rev. Microbiol.
, vol.14
, pp. 341-358
-
-
Jerne, N.K.1
-
3
-
-
0030174309
-
Mapping epitope structure and activity: From one-dimensional prediction to four-dimensional description of antigenic specificity
-
8812702
-
Mapping Epitope Structure and Activity: From One-Dimensional Prediction to Four-Dimensional Description of Antigenic Specificity. MHV Van Regenmortel, Methods. 1996 9 3 465 472 8812702
-
(1996)
Methods.
, vol.9
, Issue.3
, pp. 465-472
-
-
Van Regenmortel, M.H.V.1
-
4
-
-
0017157584
-
A simplified representation of protein conformations for rapid simulation of protein folding
-
957439
-
A simplified representation of protein conformations for rapid simulation of protein folding. M Levitt, J. Mol. Biol. 1976 104 59 107 957439
-
(1976)
J. Mol. Biol.
, vol.104
, pp. 59-107
-
-
Levitt, M.1
-
5
-
-
0021918946
-
Prediction of chain flexibility in proteins: A tool for the selection of peptide antigen
-
Prediction of chain flexibility in proteins: a tool for the selection of peptide antigen. P Karplus G Schulz, Naturwissenschaften 1985 72 4 212 213
-
(1985)
Naturwissenschaften
, vol.72
, Issue.4
, pp. 212-213
-
-
Karplus, P.1
Schulz, G.2
-
6
-
-
0023055775
-
New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: Correlation of predicted surface residues with antigenicity and x-ray-derived accessible sites
-
2430611
-
New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and x-ray-derived accessible sites. J Parker D Guo R Hodges, Biochemistry 1986 25 19 5425 5432 2430611
-
(1986)
Biochemistry
, vol.25
, Issue.19
, pp. 5425-5432
-
-
Parker, J.1
Guo, D.2
Hodges, R.3
-
7
-
-
23144457577
-
CEP: A conformational epitope prediction server
-
15980448
-
CEP: a conformational epitope prediction server. U Kulkarni-Kale S Bhosle AS Kolaskar, Nucleic Acids Res 2005 33 Web Server issue 168 W171 15980448
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.WEB SERVER ISSUE
-
-
Kulkarni-Kale, U.1
Bhosle, S.2
Kolaskar, A.S.3
-
8
-
-
33751099863
-
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures
-
17001032
-
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures. PH Andersen M Nielsen O Lund, Protein Sci. 2006 15 11 2558 2567 17001032
-
(2006)
Protein Sci.
, vol.15
, Issue.11
, pp. 2558-2567
-
-
Andersen, P.H.1
Nielsen, M.2
Lund, O.3
-
9
-
-
0016197604
-
Amino acid difference formula to help explain protein evolution
-
4843792
-
Amino Acid Difference Formula to Help Explain Protein Evolution. R Grantham, Science 1974 185 4154 862 864 4843792
-
(1974)
Science
, vol.185
, Issue.4154
, pp. 862-864
-
-
Grantham, R.1
-
10
-
-
0025605617
-
A semi-empirical method for prediction of antigenic determinants on protein antigens
-
1702393
-
A semi-empirical method for prediction of antigenic determinants on protein antigens. A Kolaskar PC Tongaonkar, FEBS Lett. 1990 276 1-2 172 174 1702393
-
(1990)
FEBS Lett.
, vol.276
, Issue.1-2
, pp. 172-174
-
-
Kolaskar, A.1
Tongaonkar, P.C.2
-
11
-
-
11144246404
-
Benchmarking B cell epitope prediction: Underperformance of existing methods
-
15576553
-
Benchmarking B cell epitope prediction: underperformance of existing methods. MJ Blythe DR Flower, Protein Sci. 2005 14 246 8 15576553
-
(2005)
Protein Sci.
, vol.14
, pp. 246-8
-
-
Blythe, M.J.1
Flower, D.R.2
-
13
-
-
37749042370
-
Antibody-protein interactions: Denchmark datasets and prediction tools evaluation
-
17910770
-
Antibody-protein interactions: benchmark datasets and prediction tools evaluation. JV Ponomarenko PE Bourne, BMC Struct Biol 2007 7 64 17910770
-
(2007)
BMC Struct Biol
, vol.7
, pp. 64
-
-
Ponomarenko, J.V.1
Bourne, P.E.2
-
14
-
-
34248581488
-
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools
-
17205610
-
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. JA Greenbaum PH Andersen M Blythe HH Bui RE Cachau J Crowe M Davies A Kolaskar O Lund S Morrison B Mumey Y Ofran JL Pellequer C Pinilla JV Ponomarenko GPS Raghava MHV van Regenmortel EL Roggen A Sette A Schlessinger J Sollner M Zand B Peters, J. Mol. Recognit. 2007 20 2 75 82 17205610
-
(2007)
J. Mol. Recognit.
, vol.20
, Issue.2
, pp. 75-82
-
-
Greenbaum, J.A.1
Andersen, P.H.2
Blythe, M.3
Bui, H.H.4
Cachau, R.E.5
Crowe, J.6
Davies, M.7
Kolaskar, A.8
Lund, O.9
Morrison, S.10
Mumey, B.11
Ofran, Y.12
Pellequer, J.L.13
Pinilla, C.14
Ponomarenko, J.V.15
Raghava, G.P.S.16
Van Regenmortel, M.H.V.17
Roggen, E.L.18
Sette, A.19
Schlessinger, A.20
Sollner, J.21
Zand, M.22
Peters, B.23
more..
-
15
-
-
1842526090
-
ProMate: A structure based prediction program to identify the location of protein-protein binding sites
-
15050833
-
ProMate: A Structure Based Prediction Program to Identify the Location of Protein-Protein Binding Sites. H Neuvirth R Raz G Schreiber, Journal of Molecular Biology 2004 338 181 199 15050833
-
(2004)
Journal of Molecular Biology
, vol.338
, pp. 181-199
-
-
Neuvirth, H.1
Raz, R.2
Schreiber, G.3
-
16
-
-
33745030152
-
Machine learning approaches for prediction of linear B-cell epitopes on proteins
-
16598694
-
Machine learning approaches for prediction of linear B-cell epitopes on proteins. J Sollner B Mayer, J. Mol. Recognit. 2006 19 200 208 16598694
-
(2006)
J. Mol. Recognit.
, vol.19
, pp. 200-208
-
-
Sollner, J.1
Mayer, B.2
-
17
-
-
0030821164
-
Structural insights into the evolution of an antibody combining site
-
9180069
-
Structural Insights into the Evolution of an Antibody Combining Site. GJ Wedemayer PA Patten LH Wang PG Schultz RC Stevens, Science 1997 276 5319 1665 1669 9180069
-
(1997)
Science
, vol.276
, Issue.5319
, pp. 1665-1669
-
-
Wedemayer, G.J.1
Patten, P.A.2
Wang, L.H.3
Schultz, P.G.4
Stevens, R.C.5
-
18
-
-
0025351555
-
Epitopes on protein antigens: Misconceptions and realities
-
1693095
-
Epitopes on protein antigens: misconceptions and realities. WG Laverstar GM Air RG Webster SJ Smith-Gill, Cell 1990 61 4 553 556 1693095
-
(1990)
Cell
, vol.61
, Issue.4
, pp. 553-556
-
-
Laverstar, W.G.1
Air, G.M.2
Webster, R.G.3
Smith-Gill, S.J.4
-
19
-
-
0014828908
-
An analysis of the sequences of the variable regions of bence jones proteins and myeloma light chains and their implications for antibody complementarity
-
5508247
-
An analysis of the sequences of the variable regions of bence jones proteins and myeloma light chains and their implications for antibody complementarity. TT Wu EA Kabat, The Journal of Experimental Medicine 1970 132 211 250 5508247
-
(1970)
The Journal of Experimental Medicine
, vol.132
, pp. 211-250
-
-
Wu, T.T.1
Kabat, E.A.2
-
20
-
-
20944447214
-
The immune epitope database and analysis resource: From vision to blueprint
-
15760272
-
The Immune Epitope Database and Analysis Resource: From Vision to Blueprint. B Peters J Sidney P Bourne HH Bui S Buus G Doh W Fleri M Kronenberg R Kubo O Lund D Nemazee JV Ponomarenko M Sathiamurthy S Schoenberger S Stewart P Surko S Way S Wilson A Sette, PLoS Biol 2005 3 3 91 15760272
-
(2005)
PLoS Biol
, vol.3
, Issue.3
, pp. 591
-
-
Peters, B.1
Sidney, J.2
Bourne, P.3
Bui, H.H.4
Buus, S.5
Doh, G.6
Fleri, W.7
Kronenberg, M.8
Kubo, R.9
Lund, O.10
Nemazee, D.11
Ponomarenko, J.V.12
Sathiamurthy, M.13
Schoenberger, S.14
Stewart, S.15
Surko, P.16
Way, S.17
Wilson, S.18
Sette, A.19
-
21
-
-
0033954256
-
The protein data bank
-
10592235
-
The Protein Data Bank. HM Berman J Westbrook Z Feng G Gilliland TN Bhat H Weissig IN Shindyalov PE Bourne, Nucleic Acids Research 2000 28 235 242 10592235
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
22
-
-
0023278330
-
Canonical structures for the hypervariable regions of immunoglobulins
-
3681981
-
Canonical structures for the hypervariable regions of immunoglobulins. C Chothia AM Lesk, J. Mol. Biol. 1987 196 4 901 917 3681981
-
(1987)
J. Mol. Biol.
, vol.196
, Issue.4
, pp. 901-917
-
-
Chothia, C.1
Lesk, A.M.2
-
23
-
-
35649007860
-
Maximal biclique subgraphs and closed pattern pairs of the adjacency matrix: A one-to-one correspondence and mining algorithms
-
Maximal Biclique Subgraphs and Closed Pattern Pairs of the Adjacency Matrix: A One-to-one Correspondence and Mining Algorithms. J Li G Liu H Li L Wong, IEEE Transactions on Knowledge and Data Engineering 2007 19 12 1625 1637
-
(2007)
IEEE Transactions on Knowledge and Data Engineering
, vol.19
, Issue.12
, pp. 1625-1637
-
-
Li, J.1
Liu, G.2
Li, H.3
Wong, L.4
-
24
-
-
77953564323
-
LCM ver.3: Collaboration of array, bitmap and prefix tree for frequent itemset mining
-
New York, NY, USA: ACM
-
LCM ver.3: collaboration of array, bitmap and prefix tree for frequent itemset mining. T Uno M Kiyomi H Arimura, OSDM '05: Proceedings of the 1st international workshop on open source data mining New York, NY, USA: ACM 2005 77 86
-
(2005)
OSDM '05: Proceedings of the 1st International Workshop on Open Source Data Mining
, pp. 77-86
-
-
Uno, T.1
Kiyomi, M.2
Arimura, H.3
-
25
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
7108955
-
A simple method for displaying the hydropathic character of a protein. J Kyte RF Doolittle, Journal of Molecular Biology 1982 157 105 132 7108955
-
(1982)
Journal of Molecular Biology
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
27
-
-
48049124972
-
Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains
-
18614234
-
Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains. K Abhinandan AC Martin, Molecular Immunology 2008 45 3832 3839 18614234
-
(2008)
Molecular Immunology
, vol.45
, pp. 3832-3839
-
-
Abhinandan, K.1
Martin, A.C.2
-
28
-
-
44649157773
-
Computational characterization of B-cell epitopes
-
18023478
-
Computational characterization of B-cell epitopes. ND Rubinstein I Mayrose D Halperin D Yekutieli JM Gershoni T Pupko, Mol. Immunol. 2008 45 12 3477 3489 18023478
-
(2008)
Mol. Immunol.
, vol.45
, Issue.12
, pp. 3477-3489
-
-
Rubinstein, N.D.1
Mayrose, I.2
Halperin, D.3
Yekutieli, D.4
Gershoni, J.M.5
Pupko, T.6
-
29
-
-
0032981632
-
Comparison of protein-protein interactions in serine protease-inhibitor and antibody-antigen complexes: Implications for the protein docking problem
-
10091663
-
Comparison of protein-protein interactions in serine protease-inhibitor and antibody-antigen complexes: Implications for the protein docking problem. RM Jackson, Protein Sci. 1999 8 603 613 10091663
-
(1999)
Protein Sci.
, vol.8
, pp. 603-613
-
-
Jackson, R.M.1
-
30
-
-
58749083955
-
Automated identification of complementarity determining regions (CDRs) Reveals peculiar characteristics of CDRs and B cell epitopes
-
18941213
-
Automated Identification of Complementarity Determining Regions (CDRs) Reveals Peculiar Characteristics of CDRs and B Cell Epitopes. Y Ofran A Schlessinger B Rost, J Immunol 2008 181 9 6230 6235 18941213
-
(2008)
J Immunol
, vol.181
, Issue.9
, pp. 6230-6235
-
-
Ofran, Y.1
Schlessinger, A.2
Rost, B.3
-
31
-
-
1642307201
-
Identification of differences in the specificity-determining residues of antibodies that recognize antigens of different size: Implications for the rational design of antibody repertoires
-
15027033
-
Identification of differences in the specificity-determining residues of antibodies that recognize antigens of different size: implications for the rational design of antibody repertoires. AJ C, J. Mol. Recognit. 2004 17 2 132 143 15027033
-
(2004)
J. Mol. Recognit.
, vol.17
, Issue.2
, pp. 132-143
-
-
J, C.A.1
-
32
-
-
0025823716
-
Identical v region amino acid sequences and segments of sequences in antibodies of different specificities. Relative contributions of VH and VL genes, minigenes, and complementarity-determining regions to binding of antibody-combining sites
-
1908882
-
Identical V region amino acid sequences and segments of sequences in antibodies of different specificities. Relative contributions of VH and VL genes, minigenes, and complementarity-determining regions to binding of antibody-combining sites. E Kabat T Wu, J Immunol 1991 147 5 1709 1719 1908882
-
(1991)
J Immunol
, vol.147
, Issue.5
, pp. 1709-1719
-
-
Kabat, E.1
Wu, T.2
-
33
-
-
34249886331
-
Stepwise prediction of conformational discontinuous B-cell epitopes using the Mapitope algorithm
-
17427229
-
Stepwise prediction of conformational discontinuous B-cell epitopes using the Mapitope algorithm. EM Bublil NT Freund I Mayrose O Penn A Roitburd-Berman ND Rubinstein T Pupko JM Gershoni, Proteins 2007 68 294 304 17427229
-
(2007)
Proteins
, vol.68
, pp. 294-304
-
-
Bublil, E.M.1
Freund, N.T.2
Mayrose, I.3
Penn, O.4
Roitburd-Berman, A.5
Rubinstein, N.D.6
Pupko, T.7
Gershoni, J.M.8
-
34
-
-
0037263777
-
BEPITOPE: Predicting the location of continuous epitopes and patterns in proteins
-
12557235
-
BEPITOPE: predicting the location of continuous epitopes and patterns in proteins. M Odorico JL Pellequer, Journal of Molecular Recognition 2003 16 20 22 12557235
-
(2003)
Journal of Molecular Recognition
, vol.16
, pp. 20-22
-
-
Odorico, M.1
Pellequer, J.L.2
|