-
1
-
-
0029623184
-
Computational methods to predict binding free energy in ligand-receplor complexes
-
Ajay, Murcko MA. 1995. Computational methods to predict binding free energy in ligand-receplor complexes. J Med Chem 38:4953-4967.
-
(1995)
J Med Chem
, vol.38
, pp. 4953-4967
-
-
Ajay1
Murcko, M.A.2
-
2
-
-
0017411710
-
The Protein Data Bank: A computer based archival file for macromolecular structures
-
Bernstein FC, Koetzle TF, Williams GJ, Meyer EE Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M. 1977. The Protein Data Bank: A computer based archival file for macromolecular structures. J Mol Biol 112:535-542.
-
(1977)
J Mol Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer E.E., Jr.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
3
-
-
0026530977
-
Natural protein protease inhibitors and their interactions with proteinases
-
Bode W, Huber R. 1992. Natural protein protease inhibitors and their interactions with proteinases. Eur J Biochem 204:433-451.
-
(1992)
Eur J Biochem
, vol.204
, pp. 433-451
-
-
Bode, W.1
Huber, R.2
-
4
-
-
0027530108
-
Protein docking algorithms: Simulating molecular recognition
-
Cherfils J, Janin J. 1993. Protein docking algorithms: Simulating molecular recognition. Curr Opin Struct Biol 3:265-269.
-
(1993)
Curr Opin Struct Biol
, vol.3
, pp. 265-269
-
-
Cherfils, J.1
Janin, J.2
-
5
-
-
0017187836
-
The nature of the accessible and buried surfaces in proteins
-
Chothia C. 1976. The nature of the accessible and buried surfaces in proteins. J Mol Biol 105:1-12.
-
(1976)
J Mol Biol
, vol.105
, pp. 1-12
-
-
Chothia, C.1
-
6
-
-
0031565730
-
Modeling protein docking using shape complementarity, electrostatics and biochemical information
-
Gabb HA, Jackson RM, Sternberg MJE. 1997. Modeling protein docking using shape complementarity, electrostatics and biochemical information. J Mol Biol 272:106-120.
-
(1997)
J Mol Biol
, vol.272
, pp. 106-120
-
-
Gabb, H.A.1
Jackson, R.M.2
Sternberg, M.J.E.3
-
7
-
-
0003742069
-
-
London: Department of Biochemistry and Molecular Biology, University College London
-
Hubbard SJ, Thornton, JM. 1993. NACCESS, computer program. London: Department of Biochemistry and Molecular Biology, University College London.
-
(1993)
NACCESS, Computer Program
-
-
Hubbard, S.J.1
Thornton, J.M.2
-
8
-
-
0032512619
-
Rapid refinement of protein interfaces incorporating solvation: Application to the docking problem
-
Jackson RM, Gabb HA, Sternberg MJE. 1998. Rapid refinement of protein interfaces incorporating solvation: Application to the docking problem. J Mol Biol 276:265-285.
-
(1998)
J Mol Biol
, vol.276
, pp. 265-285
-
-
Jackson, R.M.1
Gabb, H.A.2
Sternberg, M.J.E.3
-
9
-
-
0029019869
-
A continuum model for protein-protein interactions: Application to the docking problem
-
Jackson RM, Sternberg MJE. 1995. A continuum model for protein-protein interactions: Application to the docking problem. J Mol Biol 250:258-275.
-
(1995)
J Mol Biol
, vol.250
, pp. 258-275
-
-
Jackson, R.M.1
Sternberg, M.J.E.2
-
10
-
-
0029421048
-
Protein-protein recognition
-
Janin J. 1995. Protein-protein recognition. Prog Biophys Molec Biol 64:145-166.
-
(1995)
Prog Biophys Molec Biol
, vol.64
, pp. 145-166
-
-
Janin, J.1
-
11
-
-
0031565729
-
Analysis of protein-protein interaction sites using surface patches
-
Jones S. Thornton JM. 1997. Analysis of protein-protein interaction sites using surface patches. J Mol Biol 272:121-132.
-
(1997)
J Mol Biol
, vol.272
, pp. 121-132
-
-
Jones, S.1
Thornton, J.M.2
-
12
-
-
0027139338
-
Affinity and specificity of serine endopeptidase-protein inhibitor interactions. Empirical free energy calculations based on X-ray crystallographic structures
-
Krystek S, Stouch T, Novotny J. 1993. Affinity and specificity of serine endopeptidase-protein inhibitor interactions. Empirical free energy calculations based on X-ray crystallographic structures. J Mol Biol 234:661-679.
-
(1993)
J Mol Biol
, vol.234
, pp. 661-679
-
-
Krystek, S.1
Stouch, T.2
Novotny, J.3
-
13
-
-
0018873523
-
Protein inhibitors of proteinases
-
Laskowski M. Kato I. 1980. Protein inhibitors of proteinases. Annu Rev Biolchem 49:593-626.
-
(1980)
Annu Rev Biolchem
, vol.49
, pp. 593-626
-
-
Laskowski, M.1
Kato, I.2
-
14
-
-
0027772959
-
Shape complementarity at protein/protein interfaces
-
Lawrence MC, Colman PM. 1993. Shape complementarity at protein/protein interfaces. J Mol Biol 234:946-950.
-
(1993)
J Mol Biol
, vol.234
, pp. 946-950
-
-
Lawrence, M.C.1
Colman, P.M.2
-
15
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee B, Richards FM. 1971. The interpretation of protein structures: Estimation of static accessibility. J Mol Biol 55:379-400.
-
(1971)
J Mol Biol
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
16
-
-
0031581824
-
Binding of amino acid side-chains to S-1 cavities of serine proteinases
-
Lu WY, Apostol I, Qasim MA, Warne N, Wynn R, Zhang WL, Anderson S, Chiang YW, Ogin E, Rothberg I. 1997. Binding of amino acid side-chains to S-1 cavities of serine proteinases. J Mol Biol 266:441-461.
-
(1997)
J Mol Biol
, vol.266
, pp. 441-461
-
-
Lu, W.Y.1
Apostol, I.2
Qasim, M.A.3
Warne, N.4
Wynn, R.5
Zhang, W.L.6
Anderson, S.7
Chiang, Y.W.8
Ogin, E.9
Rothberg, I.10
-
17
-
-
0030580057
-
Antibody-antigen interactions: Contact analysis and binding site topography
-
MacCallum RM, Martin AC, Thornton JM. 1996. Antibody-antigen interactions: Contact analysis and binding site topography. J Mol Biol 262:732-745.
-
(1996)
J Mol Biol
, vol.262
, pp. 732-745
-
-
MacCallum, R.M.1
Martin, A.C.2
Thornton, J.M.3
-
18
-
-
0018796418
-
Picosecond dynamics of tyrosine side-chains in proteins
-
McCammon JA, Wolynes PG, Karplus M. 1979. Picosecond dynamics of tyrosine side-chains in proteins. Biochemistry 18:927-942.
-
(1979)
Biochemistry
, vol.18
, pp. 927-942
-
-
McCammon, J.A.1
Wolynes, P.G.2
Karplus, M.3
-
19
-
-
0025964038
-
Structure, function and properties of antibody binding sites
-
Mian IS, Bradwell AR, Olson AJ. 1991. Structure, function and properties of antibody binding sites. J Mol Biol 217:133-151.
-
(1991)
J Mol Biol
, vol.217
, pp. 133-151
-
-
Mian, I.S.1
Bradwell, A.R.2
Olson, A.J.3
-
20
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structure
-
Murzin A, Brenner SE, Hubbard T, Chothia C. 1995. SCOP: A structural classification of proteins database for the investigation of sequences and structure. J Mol Biol 247:536-540.
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
21
-
-
0031547977
-
Empirical free energy calculations: A blind test and further improvements to the method
-
Novotny J, Bruccolcri RE, Davis M, Sharp KA. 1997. Empirical free energy calculations: A blind test and further improvements to the method. J Mol Biol 268:401-411.
-
(1997)
J Mol Biol
, vol.268
, pp. 401-411
-
-
Novotny, J.1
Bruccolcri, R.E.2
Davis, M.3
Sharp, K.A.4
-
22
-
-
0024362070
-
On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL-5
-
Novotny J, Bruccoleri RE, Saul FA. 1989. On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL-5. Biochemistry 28:4735-4749.
-
(1989)
Biochemistry
, vol.28
, pp. 4735-4749
-
-
Novotny, J.1
Bruccoleri, R.E.2
Saul, F.A.3
-
23
-
-
0025275610
-
On the nature of antibody combining sites: Unusual structural features that may confer on these sites an enhanced capacity for binding ligands
-
Padlan EA. 1990. On the nature of antibody combining sites: Unusual structural features that may confer on these sites an enhanced capacity for binding ligands. Proteins 7:112-124.
-
(1990)
Proteins
, vol.7
, pp. 112-124
-
-
Padlan, E.A.1
-
24
-
-
0024084758
-
A rapid method of calculating charge-charge interaction energies in proteins
-
Pickersgill RW. 1988. A rapid method of calculating charge-charge interaction energies in proteins. Protein Eng 2:247-248.
-
(1988)
Protein Eng
, vol.2
, pp. 247-248
-
-
Pickersgill, R.W.1
-
25
-
-
0023155210
-
Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
-
Ponder JW, Richards FM. 1987. Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. J Mol Biol 193:775-791.
-
(1987)
J Mol Biol
, vol.193
, pp. 775-791
-
-
Ponder, J.W.1
Richards, F.M.2
-
26
-
-
0031024397
-
Interscaffolding additivity. Association of P-I variants of eglin C and of turkey ovomucoid third domain with serine proteinases
-
Qasim MA, Ganz PJ, Saunders CW, Bateman KS, James MNG, Laskowski M. 1997. Interscaffolding additivity. Association of P-I variants of eglin C and of turkey ovomucoid third domain with serine proteinases. Biochemistry 36:1598-1607.
-
(1997)
Biochemistry
, vol.36
, pp. 1598-1607
-
-
Qasim, M.A.1
Ganz, P.J.2
Saunders, C.W.3
Bateman, K.S.4
James, M.N.G.5
Laskowski, M.6
-
27
-
-
0027208112
-
Rotamers: To be or not to be? An analysis of amino acid side-chain conformations in globular proteins
-
Schrauber H, Eisenhaber F, Argos P. 1993. Rotamers: To be or not to be? An analysis of amino acid side-chain conformations in globular proteins. J Mol Biol 230:592-612.
-
(1993)
J Mol Biol
, vol.230
, pp. 592-612
-
-
Schrauber, H.1
Eisenhaber, F.2
Argos, P.3
-
28
-
-
0029851680
-
The nature of the antigen
-
Sela M, Pecht I. 1996. The nature of the antigen. Adv Protein Chem 49:289-323.
-
(1996)
Adv Protein Chem
, vol.49
, pp. 289-323
-
-
Sela, M.1
Pecht, I.2
-
30
-
-
0026179489
-
A new approach to the rapid determination of protein side-chain conformations
-
Tuffery P, Etchebest C, Hazout S, Lavery R. 1991. A new approach to the rapid determination of protein side-chain conformations. J Biomol Struct Dyn 8:1267-1289.
-
(1991)
J Biomol Struct Dyn
, vol.8
, pp. 1267-1289
-
-
Tuffery, P.1
Etchebest, C.2
Hazout, S.3
Lavery, R.4
-
32
-
-
0029933286
-
Prediction of protein complexes using empirical free energy functions
-
Weng Z, Vajda S, Delisi C. 1996. Prediction of protein complexes using empirical free energy functions. Protein Sci 5:614-626.
-
(1996)
Protein Sci
, vol.5
, pp. 614-626
-
-
Weng, Z.1
Vajda, S.2
Delisi, C.3
|