메뉴 건너뛰기




Volumn 11, Issue 1, 2010, Pages

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type

Author keywords

[No Author keywords available]

Indexed keywords

CAROTENE; GENOMIC RNA; LYCOPENE; MICRORNA; TRANSFER RNA; CAROTENOID; PLANT RNA;

EID: 77952611257     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-246     Document Type: Article
Times cited : (135)

References (79)
  • 1
    • 0004227992 scopus 로고    scopus 로고
    • Biology of Citrus
    • Cambridge, UK: Cambridge University Press
    • Spiegel-Roy P, Goldschmidt EE. Biology of Citrus. 1996, Cambridge, UK: Cambridge University Press.
    • (1996)
    • Spiegel-Roy, P.1    Goldschmidt, E.E.2
  • 2
    • 33746899341 scopus 로고    scopus 로고
    • In vitro evaluation of the antioxidant activities in fruit extracts from citron and blood orange
    • Jayaprakasha GK, Patil BS. In vitro evaluation of the antioxidant activities in fruit extracts from citron and blood orange. Food Chem 2007, 101:410-418.
    • (2007) Food Chem , vol.101 , pp. 410-418
    • Jayaprakasha, G.K.1    Patil, B.S.2
  • 3
    • 0029328503 scopus 로고
    • Plant carotenoids: pigments for photoprotection, visual attraction, and human health
    • 10.1105/tpc.7.7.1027, 160905, 7640523
    • Bartley GE, Scolnik PA. Plant carotenoids: pigments for photoprotection, visual attraction, and human health. Plant Cell 1995, 7:1027-1038. 10.1105/tpc.7.7.1027, 160905, 7640523.
    • (1995) Plant Cell , vol.7 , pp. 1027-1038
    • Bartley, G.E.1    Scolnik, P.A.2
  • 4
    • 2542616691 scopus 로고    scopus 로고
    • Application of diode array detection with a C-30 reversed phase column for the separation and identification of saponified orange juice carotenoids
    • Rouseff R, Raley L, Hofsommer HJ. Application of diode array detection with a C-30 reversed phase column for the separation and identification of saponified orange juice carotenoids. J Agric Food Chem 1996, 44:2176-2181.
    • (1996) J Agric Food Chem , vol.44 , pp. 2176-2181
    • Rouseff, R.1    Raley, L.2    Hofsommer, H.J.3
  • 5
    • 0035111701 scopus 로고    scopus 로고
    • Seasonal changes of carotenoid pigments and color in Hamlin, Earlygold, and budd blood orange juices
    • 10.1021/jf000654r, 11262044
    • Lee HS, Castle WS. Seasonal changes of carotenoid pigments and color in Hamlin, Earlygold, and budd blood orange juices. J Agric Food Chem 2001, 49:877-882. 10.1021/jf000654r, 11262044.
    • (2001) J Agric Food Chem , vol.49 , pp. 877-882
    • Lee, H.S.1    Castle, W.S.2
  • 6
    • 33746894472 scopus 로고    scopus 로고
    • Differences in the carotenoid content of ordinary citrus and lycopene-accumulating mutants
    • 10.1021/jf060702t, 16848534
    • Xu CJ, Fraser PD, Wang WJ, Bramley PM. Differences in the carotenoid content of ordinary citrus and lycopene-accumulating mutants. J Agric Food Chem 2006, 54:5474-5481. 10.1021/jf060702t, 16848534.
    • (2006) J Agric Food Chem , vol.54 , pp. 5474-5481
    • Xu, C.J.1    Fraser, P.D.2    Wang, W.J.3    Bramley, P.M.4
  • 7
    • 1342265922 scopus 로고    scopus 로고
    • Accumulation of carotenoids and expression of carotenoid biosynthetic genes during maturation in citrus fruit
    • 10.1104/pp.103.031104, 344557, 14739348
    • Kato M, Ikoma Y, Matsumoto H, Sugiura M, Hyodo H, Yano M. Accumulation of carotenoids and expression of carotenoid biosynthetic genes during maturation in citrus fruit. Plant Physiol 2004, 134:824-837. 10.1104/pp.103.031104, 344557, 14739348.
    • (2004) Plant Physiol , vol.134 , pp. 824-837
    • Kato, M.1    Ikoma, Y.2    Matsumoto, H.3    Sugiura, M.4    Hyodo, H.5    Yano, M.6
  • 9
    • 0003846842 scopus 로고
    • Detection of lycopene in pink orange fruit
    • 10.1126/science.133.3463.1478, 13772077
    • Monselise SP, Halevy AH. Detection of lycopene in pink orange fruit. Science 1961, 133:1478. 10.1126/science.133.3463.1478, 13772077.
    • (1961) Science , vol.133 , pp. 1478
    • Monselise, S.P.1    Halevy, A.H.2
  • 10
    • 0003776117 scopus 로고    scopus 로고
    • Citrus Varieties of the World
    • Norwich, England: Sinclair International Ltd
    • Saunt J. Citrus Varieties of the World. 2000, Norwich, England: Sinclair International Ltd.
    • (2000)
    • Saunt, J.1
  • 11
    • 40049091938 scopus 로고    scopus 로고
    • A novel bud mutation that confers abnormal patterns of lycopene accumulation in sweet orange fruit (Citrus sinensis L. Osbeck)
    • 10.1093/jxb/erm273, 18182424
    • Liu Q, Xu J, Liu YZ, Zhao XL, Deng XX, Guo LL, Gu JQ. A novel bud mutation that confers abnormal patterns of lycopene accumulation in sweet orange fruit (Citrus sinensis L. Osbeck). J Exp Bot 2007, 58:4161-4171. 10.1093/jxb/erm273, 18182424.
    • (2007) J Exp Bot , vol.58 , pp. 4161-4171
    • Liu, Q.1    Xu, J.2    Liu, Y.Z.3    Zhao, X.L.4    Deng, X.X.5    Guo, L.L.6    Gu, J.Q.7
  • 12
    • 62349142267 scopus 로고    scopus 로고
    • Transcriptome analysis of a spontaneous mutant in sweet orange [Citrus sinensis (L.) Osbeck] during fruit development
    • 10.1093/jxb/ern329, 2652045, 19218315
    • Liu Q, Zhu A, Chai LJ, Zhou WJ, Yu KQ, Ding J, Xu J, Deng XX. Transcriptome analysis of a spontaneous mutant in sweet orange [Citrus sinensis (L.) Osbeck] during fruit development. J Exp Bot 2009, 60:801-813. 10.1093/jxb/ern329, 2652045, 19218315.
    • (2009) J Exp Bot , vol.60 , pp. 801-813
    • Liu, Q.1    Zhu, A.2    Chai, L.J.3    Zhou, W.J.4    Yu, K.Q.5    Ding, J.6    Xu, J.7    Deng, X.X.8
  • 13
    • 71049118230 scopus 로고    scopus 로고
    • Comparative transcripts profiling reveals new insight into molecular processes regulating lycopene accumulation in a sweet orange (Citrus sinensis) red-flesh mutant
    • 10.1186/1471-2164-10-540, 2784484, 19922663
    • Xu Q, Yu KQ, Zhu AD, Ye JL, Liu Q, Zhang JC, Deng X. Comparative transcripts profiling reveals new insight into molecular processes regulating lycopene accumulation in a sweet orange (Citrus sinensis) red-flesh mutant. BMC Genomics 2009, 10:540. 10.1186/1471-2164-10-540, 2784484, 19922663.
    • (2009) BMC Genomics , vol.10 , pp. 540
    • Xu, Q.1    Yu, K.Q.2    Zhu, A.D.3    Ye, J.L.4    Liu, Q.5    Zhang, J.C.6    Deng, X.7
  • 14
    • 73149100123 scopus 로고    scopus 로고
    • Comparative proteomics of a lycopene-accumulating mutant reveals the important role of oxidative stress on carotenogenesis in sweet orange (Citrus sinensis [L.] Osbeck)
    • 10.1002/pmic.200900092, 19834898
    • Pan ZY, Liu Q, Yun Z, Guan R, Zeng WF, Xu Q, Deng XX. Comparative proteomics of a lycopene-accumulating mutant reveals the important role of oxidative stress on carotenogenesis in sweet orange (Citrus sinensis [L.] Osbeck). Proteomics 2009, 9:5455-5470. 10.1002/pmic.200900092, 19834898.
    • (2009) Proteomics , vol.9 , pp. 5455-5470
    • Pan, Z.Y.1    Liu, Q.2    Yun, Z.3    Guan, R.4    Zeng, W.F.5    Xu, Q.6    Deng, X.X.7
  • 15
    • 36248988628 scopus 로고    scopus 로고
    • Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves
    • 10.1104/pp.107.104828, 2048778, 17873090
    • Welsch R, Maass D, Voegel T, Dellapenna D, Beyer P. Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves. Plant Physiol 2007, 145:1073-1085. 10.1104/pp.107.104828, 2048778, 17873090.
    • (2007) Plant Physiol , vol.145 , pp. 1073-1085
    • Welsch, R.1    Maass, D.2    Voegel, T.3    Dellapenna, D.4    Beyer, P.5
  • 16
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • 10.1016/j.cell.2009.01.002, 19167326
    • Bartel DP. MicroRNAs: target recognition and regulatory functions. Cell 2009, 136:215-233. 10.1016/j.cell.2009.01.002, 19167326.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 17
    • 33645528966 scopus 로고    scopus 로고
    • Post-transcriptional small RNA pathways in plants: mechanisms and regulations
    • 10.1101/gad.1410506, 16600909
    • Vaucheret H. Post-transcriptional small RNA pathways in plants: mechanisms and regulations. Genes Dev 2006, 20:759-771. 10.1101/gad.1410506, 16600909.
    • (2006) Genes Dev , vol.20 , pp. 759-771
    • Vaucheret, H.1
  • 18
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant MicroRNAs and their targets, including a stress-induced miRNA
    • 10.1016/j.molcel.2004.05.027, 15200956
    • Jones-Rhoades MW, Bartel DP. Computational identification of plant MicroRNAs and their targets, including a stress-induced miRNA. Mol Cell 2004, 14:787-799. 10.1016/j.molcel.2004.05.027, 15200956.
    • (2004) Mol Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 19
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    • 10.1105/tpc.104.022830, 519194, 15258262
    • Sunkar R, Zhu JK. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 2004, 16:2001-2019. 10.1105/tpc.104.022830, 519194, 15258262.
    • (2004) Plant Cell , vol.16 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.K.2
  • 20
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    • 10.1105/tpc.105.033456, 1182482, 15994906
    • Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL. Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 2005, 17:2186-2203. 10.1105/tpc.105.033456, 1182482, 15994906.
    • (2005) Plant Cell , vol.17 , pp. 2186-2203
    • Lu, S.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.5    Chiang, V.L.6
  • 21
    • 33745271035 scopus 로고    scopus 로고
    • Functions of microRNAs and related small RNAs in plants
    • 10.1038/ng1791, 16736022
    • Mallory AC, Vaucheret H. Functions of microRNAs and related small RNAs in plants. Nat Genet 2006, 38:S31-36. 10.1038/ng1791, 16736022.
    • (2006) Nat Genet , vol.38
    • Mallory, A.C.1    Vaucheret, H.2
  • 22
    • 33745963372 scopus 로고    scopus 로고
    • Pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a MicroRNA399 target gene
    • 10.1104/pp.106.078063, 1489903, 16679417
    • Aung K, Lin SI, Wu CC, Huang YT, Su CL, Chiou TJ. pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a MicroRNA399 target gene. Plant Physiol 2006, 141:1000-1011. 10.1104/pp.106.078063, 1489903, 16679417.
    • (2006) Plant Physiol , vol.141 , pp. 1000-1011
    • Aung, K.1    Lin, S.I.2    Wu, C.C.3    Huang, Y.T.4    Su, C.L.5    Chiou, T.J.6
  • 23
    • 53549106068 scopus 로고    scopus 로고
    • Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    • 10.1101/gr.080127.108, 2556272, 18653800
    • Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T. Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Res 2008, 18:1602-1609. 10.1101/gr.080127.108, 2556272, 18653800.
    • (2008) Genome Res , vol.18 , pp. 1602-1609
    • Moxon, S.1    Jing, R.2    Szittya, G.3    Schwach, F.4    Rusholme Pilcher, R.L.5    Moulton, V.6    Dalmay, T.7
  • 24
    • 67650156804 scopus 로고    scopus 로고
    • Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
    • 10.1104/pp.109.139139, 2705054, 19465578
    • Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR. Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. Plant Physiol 2009, 150:1541-1555. 10.1104/pp.109.139139, 2705054, 19465578.
    • (2009) Plant Physiol , vol.150 , pp. 1541-1555
    • Pant, B.D.1    Musialak-Lange, M.2    Nuc, P.3    May, P.4    Buhtz, A.5    Kehr, J.6    Walther, D.7    Scheible, W.R.8
  • 25
    • 46149085626 scopus 로고    scopus 로고
    • Small RNA metabolism in Arabidopsis
    • 10.1016/j.tplants.2008.03.008, 2569976, 18501663
    • Ramachandran V, Chen X. Small RNA metabolism in Arabidopsis. Trends Plant Sci 2008, 13:368-374. 10.1016/j.tplants.2008.03.008, 2569976, 18501663.
    • (2008) Trends Plant Sci , vol.13 , pp. 368-374
    • Ramachandran, V.1    Chen, X.2
  • 26
    • 0035984059 scopus 로고    scopus 로고
    • Endogenous and silencing-associated small RNAs in plants
    • 10.1105/tpc.003210, 150710, 12119378
    • Llave C, Kasschau KD, Rector MA, Carrington JC. Endogenous and silencing-associated small RNAs in plants. Plant Cell 2002, 14:1605-1619. 10.1105/tpc.003210, 150710, 12119378.
    • (2002) Plant Cell , vol.14 , pp. 1605-1619
    • Llave, C.1    Kasschau, K.D.2    Rector, M.A.3    Carrington, J.C.4
  • 27
    • 25444490438 scopus 로고    scopus 로고
    • Computational evidence for hundreds of non-conserved plant microRNAs
    • 10.1186/1471-2164-6-119, 1249568, 16159385
    • Lindow M, Krogh A. Computational evidence for hundreds of non-conserved plant microRNAs. BMC Genomics 2005, 6:119. 10.1186/1471-2164-6-119, 1249568, 16159385.
    • (2005) BMC Genomics , vol.6 , pp. 119
    • Lindow, M.1    Krogh, A.2
  • 28
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • 10.1101/gad.1476406, 1698448, 17182867
    • Rajagopalan R, Vaucheret H, Trejo J, Bartel DP. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 2006, 20:3407-3425. 10.1101/gad.1476406, 1698448, 17182867.
    • (2006) Genes Dev , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 29
    • 33645525893 scopus 로고    scopus 로고
    • MicroRNAs and their regulatory roles in plants
    • 10.1146/annurev.arplant.57.032905.105218, 16669754
    • Jones-Rhoades MW, Bartel DP, Bartel B. MicroRNAs and their regulatory roles in plants. Annu Rev Plant Biol 2006, 57:19-53. 10.1146/annurev.arplant.57.032905.105218, 16669754.
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 19-53
    • Jones-Rhoades, M.W.1    Bartel, D.P.2    Bartel, B.3
  • 30
    • 3042626641 scopus 로고    scopus 로고
    • Identification of 20 microRNAs from Oryza sativa
    • 10.1093/nar/gkh332, 390330, 15020705
    • Wang JF, Zhou H, Chen YQ, Luo QJ, Qu LH. Identification of 20 microRNAs from Oryza sativa. Nucleic Acids Res 2004, 32:1688-1695. 10.1093/nar/gkh332, 390330, 15020705.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1688-1695
    • Wang, J.F.1    Zhou, H.2    Chen, Y.Q.3    Luo, Q.J.4    Qu, L.H.5
  • 31
    • 22144464033 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from rice
    • 10.1105/tpc.105.031682, 1091763, 15805478
    • Sunkar R, Girke T, Jain PK, Zhu JK. Cloning and characterization of microRNAs from rice. Plant Cell 2005, 17:1397-1411. 10.1105/tpc.105.031682, 1091763, 15805478.
    • (2005) Plant Cell , vol.17 , pp. 1397-1411
    • Sunkar, R.1    Girke, T.2    Jain, P.K.3    Zhu, J.K.4
  • 32
    • 3843089328 scopus 로고    scopus 로고
    • Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
    • 10.1073/pnas.0404025101, 509231, 15272084
    • Bonnet E, Wuyts J, Rouze P, Peer Y. Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci USA 2004, 101:11511-11516. 10.1073/pnas.0404025101, 509231, 15272084.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11511-11516
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Peer, Y.4
  • 34
    • 27844495281 scopus 로고    scopus 로고
    • Identification and characterization of new plant microRNAs using EST analysis
    • 10.1038/sj.cr.7290302, 15916721
    • Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA. Identification and characterization of new plant microRNAs using EST analysis. Cell Res 2005, 15:336-360. 10.1038/sj.cr.7290302, 15916721.
    • (2005) Cell Res , vol.15 , pp. 336-360
    • Zhang, B.H.1    Pan, X.P.2    Wang, Q.L.3    Cobb, G.P.4    Anderson, T.A.5
  • 36
    • 69249229480 scopus 로고    scopus 로고
    • Identification and characterization of 27 conserved microRNAs in citrus
    • 10.1007/s00425-009-0971-x, 2729984, 19585144
    • Song C, Fang J, Li X, Liu H, Thomas Chao C. Identification and characterization of 27 conserved microRNAs in citrus. Planta 2009, 230:671-685. 10.1007/s00425-009-0971-x, 2729984, 19585144.
    • (2009) Planta , vol.230 , pp. 671-685
    • Song, C.1    Fang, J.2    Li, X.3    Liu, H.4    Thomas Chao, C.5
  • 37
    • 41649102715 scopus 로고    scopus 로고
    • Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    • 10.1101/gr.6897308, 2279245, 18323537
    • Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ. Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res 2008, 18:571-584. 10.1101/gr.6897308, 2279245, 18323537.
    • (2008) Genome Res , vol.18 , pp. 571-584
    • Morin, R.D.1    Aksay, G.2    Dolgosheina, E.3    Ebhardt, H.A.4    Magrini, V.5    Mardis, E.R.6    Sahinalp, S.C.7    Unrau, P.J.8
  • 38
    • 24644490196 scopus 로고    scopus 로고
    • Elucidation of the small RNA component of the transcriptome
    • 10.1126/science.1114112, 16141074
    • Lu C, Tej SS, Luo S, Haudenschild CD, Meyers BC, Green PJ. Elucidation of the small RNA component of the transcriptome. Science 2005, 309:1567-1569. 10.1126/science.1114112, 16141074.
    • (2005) Science , vol.309 , pp. 1567-1569
    • Lu, C.1    Tej, S.S.2    Luo, S.3    Haudenschild, C.D.4    Meyers, B.C.5    Green, P.J.6
  • 42
    • 42449150879 scopus 로고    scopus 로고
    • Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    • 10.1073/pnas.0708743105, 2290808, 18353984
    • Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, et al. Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proc Natl Acad Sci USA 2008, 105:4951-4956. 10.1073/pnas.0708743105, 2290808, 18353984.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 4951-4956
    • Lu, C.1    Jeong, D.H.2    Kulkarni, K.3    Pillay, M.4    Nobuta, K.5    German, R.6    Thatcher, S.R.7    Maher, C.8    Zhang, L.9    Ware, D.10
  • 43
    • 42149157716 scopus 로고    scopus 로고
    • Identification of novel and candidate miRNAs in rice by high throughput sequencing
    • 10.1186/1471-2229-8-25, 2292181, 18312648
    • Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK. Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol 2008, 8:25. 10.1186/1471-2229-8-25, 2292181, 18312648.
    • (2008) BMC Plant Biol , vol.8 , pp. 25
    • Sunkar, R.1    Zhou, X.2    Zheng, Y.3    Zhang, W.4    Zhu, J.K.5
  • 44
    • 63349083143 scopus 로고    scopus 로고
    • Characterization and expression profiles of miRNAs in rice seeds
    • 10.1093/nar/gkn998, 2647296, 19103661
    • Xue LJ, Zhang JJ, Xue HW. Characterization and expression profiles of miRNAs in rice seeds. Nucleic Acids Res 2009, 37:916-930. 10.1093/nar/gkn998, 2647296, 19103661.
    • (2009) Nucleic Acids Res , vol.37 , pp. 916-930
    • Xue, L.J.1    Zhang, J.J.2    Xue, H.W.3
  • 45
    • 34547668337 scopus 로고    scopus 로고
    • Common functions for diverse small RNAs of land plants
    • 10.1105/tpc.107.051706, 1955733, 17601824
    • Axtell MJ, Snyder JA, Bartell DP. Common functions for diverse small RNAs of land plants. Plant Cell 2007, 19:1750-1769. 10.1105/tpc.107.051706, 1955733, 17601824.
    • (2007) Plant Cell , vol.19 , pp. 1750-1769
    • Axtell, M.J.1    Snyder, J.A.2    Bartell, D.P.3
  • 46
    • 34548473571 scopus 로고    scopus 로고
    • Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants
    • 10.1111/j.1365-313X.2007.03197.x, 17635767
    • Barakat A, Wall K, Leebens-Mack J, Wang YJ, Carlson JE, dePamphilis CW. Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants. Plant J 2007, 51:991-1003. 10.1111/j.1365-313X.2007.03197.x, 17635767.
    • (2007) Plant J , vol.51 , pp. 991-1003
    • Barakat, A.1    Wall, K.2    Leebens-Mack, J.3    Wang, Y.J.4    Carlson, J.E.5    dePamphilis, C.W.6
  • 47
    • 41149120780 scopus 로고    scopus 로고
    • Conservation and divergence of microRNAs in Populus
    • 10.1186/1471-2164-8-481, 2270843, 18166134
    • Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE. Conservation and divergence of microRNAs in Populus. BMC Genomics 2007, 8:481. 10.1186/1471-2164-8-481, 2270843, 18166134.
    • (2007) BMC Genomics , vol.8 , pp. 481
    • Barakat, A.1    Wall, P.K.2    Diloreto, S.3    Depamphilis, C.W.4    Carlson, J.E.5
  • 48
    • 34347355440 scopus 로고    scopus 로고
    • MiRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    • 10.1038/nature05903, 17538623
    • Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC. miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature 2007, 447:1126-1129. 10.1038/nature05903, 17538623.
    • (2007) Nature , vol.447 , pp. 1126-1129
    • Molnar, A.1    Schwach, F.2    Studholme, D.J.3    Thuenemann, E.C.4    Baulcombe, D.C.5
  • 49
    • 39549115890 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    • 10.1186/gb-2007-8-6-r96, 2394755, 17543110
    • Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q. Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol 2007, 8:R96. 10.1186/gb-2007-8-6-r96, 2394755, 17543110.
    • (2007) Genome Biol , vol.8
    • Yao, Y.1    Guo, G.2    Ni, Z.3    Sunkar, R.4    Du, J.5    Zhu, J.K.6    Sun, Q.7
  • 50
    • 62549095240 scopus 로고    scopus 로고
    • High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)
    • 10.1016/j.gene.2009.01.006, 19393185
    • Qiu D, Pan X, Wilson IW, Li F, Liu M, Teng W, Zhang B. High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis). Gene 2009, 436:37-44. 10.1016/j.gene.2009.01.006, 19393185.
    • (2009) Gene , vol.436 , pp. 37-44
    • Qiu, D.1    Pan, X.2    Wilson, I.W.3    Li, F.4    Liu, M.5    Teng, W.6    Zhang, B.7
  • 54
    • 38849140922 scopus 로고    scopus 로고
    • Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs
    • 10.1186/1746-4811-3-12, 2225395, 17931426
    • Varkonyi-Gasic E, Wu R, Wood M, Walton EF, Hellens RP. Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 2007, 3:12. 10.1186/1746-4811-3-12, 2225395, 17931426.
    • (2007) Plant Methods , vol.3 , pp. 12
    • Varkonyi-Gasic, E.1    Wu, R.2    Wood, M.3    Walton, E.F.4    Hellens, R.P.5
  • 55
    • 63649146109 scopus 로고    scopus 로고
    • The quantification of tomato microRNAs response to viral infection by stem-loop real-time RT-PCR
    • 10.1016/j.gene.2009.01.017, 19374024
    • Feng J, Wang K, Liu X, Chen S, Chen J. The quantification of tomato microRNAs response to viral infection by stem-loop real-time RT-PCR. Gene 2009, 437:14-21. 10.1016/j.gene.2009.01.017, 19374024.
    • (2009) Gene , vol.437 , pp. 14-21
    • Feng, J.1    Wang, K.2    Liu, X.3    Chen, S.4    Chen, J.5
  • 56
    • 23144458275 scopus 로고    scopus 로고
    • MiRU: an automated plant miRNA target prediction server
    • 10.1093/nar/gki383, 1160144, 15980567
    • Zhang Y. miRU: an automated plant miRNA target prediction server. Nucleic Acids Res 2005, 33:W701-704. 10.1093/nar/gki383, 1160144, 15980567.
    • (2005) Nucleic Acids Res , vol.33
    • Zhang, Y.1
  • 57
    • 38949151063 scopus 로고    scopus 로고
    • Gene silencing in plants using artificial microRNAs and other small RNAs
    • 10.1111/j.1365-313X.2007.03328.x, 18269576
    • Ossowski S, Schwab R, Weigel D. Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J 2008, 53:674-690. 10.1111/j.1365-313X.2007.03328.x, 18269576.
    • (2008) Plant J , vol.53 , pp. 674-690
    • Ossowski, S.1    Schwab, R.2    Weigel, D.3
  • 58
    • 52949088691 scopus 로고    scopus 로고
    • A toolkit for analysing large-scale plant small RNA datasets
    • 10.1093/bioinformatics/btn428, 18713789
    • Moxon S, Schwach F, Dalmay T, Maclean D, Studholme DJ, Moulton V. A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics 2008, 24:2252-2253. 10.1093/bioinformatics/btn428, 18713789.
    • (2008) Bioinformatics , vol.24 , pp. 2252-2253
    • Moxon, S.1    Schwach, F.2    Dalmay, T.3    Maclean, D.4    Studholme, D.J.5    Moulton, V.6
  • 59
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • 10.1093/nar/gkg595, 169194, 12824337
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31:3406-3415. 10.1093/nar/gkg595, 169194, 12824337.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 60
    • 69249101248 scopus 로고    scopus 로고
    • Cloning and characterization of small non-coding RNAs from grape
    • 10.1111/j.1365-313X.2009.03906.x, 19453456
    • Carra A, Mica E, Gambino G, Pindo M, Moser C, Pe ME, Schubert A. Cloning and characterization of small non-coding RNAs from grape. Plant J 2009, 59:750-763. 10.1111/j.1365-313X.2009.03906.x, 19453456.
    • (2009) Plant J , vol.59 , pp. 750-763
    • Carra, A.1    Mica, E.2    Gambino, G.3    Pindo, M.4    Moser, C.5    Pe, M.E.6    Schubert, A.7
  • 61
    • 32944464673 scopus 로고    scopus 로고
    • Cloning and characterization of micro-RNAs from moss
    • 10.1111/j.1365-313X.2005.02499.x, 16146523
    • Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC. Cloning and characterization of micro-RNAs from moss. Plant J 2005, 43:837-848. 10.1111/j.1365-313X.2005.02499.x, 16146523.
    • (2005) Plant J , vol.43 , pp. 837-848
    • Arazi, T.1    Talmor-Neiman, M.2    Stav, R.3    Riese, M.4    Huijser, P.5    Baulcombe, D.C.6
  • 62
    • 66349135632 scopus 로고    scopus 로고
    • Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis
    • 10.1371/journal.pgen.1000457, 2664332, 19381263
    • Luo QJ, Samanta MP, Koksal F, Janda J, Galbraith DW, Richardson CR, Ou-Yang F, Rock CD. Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis. PLoS Genet 2009, 5:e1000457. 10.1371/journal.pgen.1000457, 2664332, 19381263.
    • (2009) PLoS Genet , vol.5
    • Luo, Q.J.1    Samanta, M.P.2    Koksal, F.3    Janda, J.4    Galbraith, D.W.5    Richardson, C.R.6    Ou-Yang, F.7    Rock, C.D.8
  • 63
    • 41649106136 scopus 로고    scopus 로고
    • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    • 10.1101/gr.7179508, 2279248, 18285502
    • Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, et al. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res 2008, 18:610-621. 10.1101/gr.7179508, 2279248, 18285502.
    • (2008) Genome Res , vol.18 , pp. 610-621
    • Morin, R.D.1    O'Connor, M.D.2    Griffith, M.3    Kuchenbauer, F.4    Delaney, A.5    Prabhu, A.L.6    Zhao, Y.7    McDonald, H.8    Zeng, T.9    Hirst, M.10
  • 64
    • 41349096445 scopus 로고    scopus 로고
    • Gene regulation by transcription factors and microRNAs
    • 10.1126/science.1151651, 18369135
    • Hobert O. Gene regulation by transcription factors and microRNAs. Science 2008, 319:1785-1786. 10.1126/science.1151651, 18369135.
    • (2008) Science , vol.319 , pp. 1785-1786
    • Hobert, O.1
  • 65
    • 33745279055 scopus 로고    scopus 로고
    • Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
    • 10.1038/ng1804, 16699516
    • Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet 2006, 38:721-725. 10.1038/ng1804, 16699516.
    • (2006) Nat Genet , vol.38 , pp. 721-725
    • Henderson, I.R.1    Zhang, X.2    Lu, C.3    Johnson, L.4    Meyers, B.C.5    Green, P.J.6    Jacobsen, S.E.7
  • 66
    • 33646830110 scopus 로고    scopus 로고
    • Conservation and divergence of plant microRNA genes
    • 10.1111/j.1365-313X.2006.02697.x, 16623887
    • Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA. Conservation and divergence of plant microRNA genes. Plant J 2006, 46:243-259. 10.1111/j.1365-313X.2006.02697.x, 16623887.
    • (2006) Plant J , vol.46 , pp. 243-259
    • Zhang, B.1    Pan, X.2    Cannon, C.H.3    Cobb, G.P.4    Anderson, T.A.5
  • 67
    • 43149096961 scopus 로고    scopus 로고
    • In silico identification of conserved microRNAs in large number of diverse plant species
    • 10.1186/1471-2229-8-37, 2358906, 18416839
    • Sunkar R, Jagadeeswaran G. In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol 2008, 8:37. 10.1186/1471-2229-8-37, 2358906, 18416839.
    • (2008) BMC Plant Biol , vol.8 , pp. 37
    • Sunkar, R.1    Jagadeeswaran, G.2
  • 68
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • 10.1016/j.cell.2009.01.046, 19239888
    • Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136(4):669-687. 10.1016/j.cell.2009.01.046, 19239888.
    • (2009) Cell , vol.136 , Issue.4 , pp. 669-687
    • Voinnet, O.1
  • 69
    • 33750440526 scopus 로고    scopus 로고
    • A two-hit trigger for siRNA biogenesis in plants
    • 10.1016/j.cell.2006.09.032, 17081978
    • Axtell MJ, Jan C, Rajagopalan R, Bartel DP. A two-hit trigger for siRNA biogenesis in plants. Cell 2006, 127:565-577. 10.1016/j.cell.2006.09.032, 17081978.
    • (2006) Cell , vol.127 , pp. 565-577
    • Axtell, M.J.1    Jan, C.2    Rajagopalan, R.3    Bartel, D.P.4
  • 70
    • 33745804463 scopus 로고    scopus 로고
    • MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis
    • 10.1105/tpc.106.042127, 1488920, 16798886
    • Ronemus M, Vaughn MW, Martienssen RA. MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. Plant Cell 2006, 18:1559-1574. 10.1105/tpc.106.042127, 1488920, 16798886.
    • (2006) Plant Cell , vol.18 , pp. 1559-1574
    • Ronemus, M.1    Vaughn, M.W.2    Martienssen, R.A.3
  • 71
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • 10.1016/j.cell.2005.04.004, 15851028
    • Allen E, Xie ZX, Gustafson AM, Carrington JC. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005, 121:207-221. 10.1016/j.cell.2005.04.004, 15851028.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.X.2    Gustafson, A.M.3    Carrington, J.C.4
  • 72
    • 57849105533 scopus 로고    scopus 로고
    • The antisense transcriptomes of human cells
    • 10.1126/science.1163853, 2824178, 19056939
    • He Y, Vogelstein B, Velculescu VE, Papadopoulos N, Kinzler KW. The antisense transcriptomes of human cells. Science 2008, 322:1855-1857. 10.1126/science.1163853, 2824178, 19056939.
    • (2008) Science , vol.322 , pp. 1855-1857
    • He, Y.1    Vogelstein, B.2    Velculescu, V.E.3    Papadopoulos, N.4    Kinzler, K.W.5
  • 73
    • 35348813655 scopus 로고    scopus 로고
    • Transcriptional profiling of high pigment-2dg tomato mutant links early fruit plastid biogenesis with its overproduction of phytonutrients
    • 10.1104/pp.107.102962, 2048735, 17704236
    • Kolotilin I, Koltai H, Tadmor Y, Bar-Or C, Reuveni M, Meir A, Nahon S, Shlomo H, Chen L, Levin I. Transcriptional profiling of high pigment-2dg tomato mutant links early fruit plastid biogenesis with its overproduction of phytonutrients. Plant Physiol 2007, 145:389-401. 10.1104/pp.107.102962, 2048735, 17704236.
    • (2007) Plant Physiol , vol.145 , pp. 389-401
    • Kolotilin, I.1    Koltai, H.2    Tadmor, Y.3    Bar-Or, C.4    Reuveni, M.5    Meir, A.6    Nahon, S.7    Shlomo, H.8    Chen, L.9    Levin, I.10
  • 74
    • 34547214644 scopus 로고    scopus 로고
    • Efficient isolation of RNA from fruit peel and pulp of ripening navel orange (Citrus sinensis Osbeck)
    • Liu Y, Liu Q, Tao N, Deng X. Efficient isolation of RNA from fruit peel and pulp of ripening navel orange (Citrus sinensis Osbeck). J Huazhong Agric Univ 2006, 25:300-304.
    • (2006) J Huazhong Agric Univ , vol.25 , pp. 300-304
    • Liu, Y.1    Liu, Q.2    Tao, N.3    Deng, X.4
  • 75
    • 33749059160 scopus 로고    scopus 로고
    • MiRBase: the microRNA sequence database
    • Griffiths-Jones S. miRBase: the microRNA sequence database. Methods Mol Biol 2006, 342:129-138.
    • (2006) Methods Mol Biol , vol.342 , pp. 129-138
    • Griffiths-Jones, S.1
  • 76
    • 0032979731 scopus 로고    scopus 로고
    • Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources
    • 25383, 10359602
    • Kal AJ, van Zonneveld AJ, Benes V, Berg M, Koerkamp MG, Albermann K, Strack N, Ruijter JM, Richter A, Dujon B, et al. Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources. Mol Biol Cell 1999, 10:1859-1872. 25383, 10359602.
    • (1999) Mol Biol Cell , vol.10 , pp. 1859-1872
    • Kal, A.J.1    van Zonneveld, A.J.2    Benes, V.3    Berg, M.4    Koerkamp, M.G.5    Albermann, K.6    Strack, N.7    Ruijter, J.M.8    Richter, A.9    Dujon, B.10
  • 77
    • 42449107363 scopus 로고    scopus 로고
    • Annot8r: GO, EC and KEGG annotation of EST datasets
    • 10.1186/1471-2105-9-180, 2324097, 18400082
    • Schmid R, Blaxter ML. annot8r: GO, EC and KEGG annotation of EST datasets. BMC Bioinformatics 2008, 9:180. 10.1186/1471-2105-9-180, 2324097, 18400082.
    • (2008) BMC Bioinformatics , vol.9 , pp. 180
    • Schmid, R.1    Blaxter, M.L.2
  • 79
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • 10.1093/nar/28.1.27, 102409, 10592173
    • Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28:27-30. 10.1093/nar/28.1.27, 102409, 10592173.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.