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Volumn 436, Issue 1-2, 2009, Pages 37-44

High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)

Author keywords

Illumina sequencing; Methyl jasmonate; MicroRNA; Paclitaxel biosynthesis; Taxus chinensis

Indexed keywords

JASMONIC ACID METHYL ESTER; MICRORNA;

EID: 62549095240     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2009.01.006     Document Type: Article
Times cited : (117)

References (35)
  • 1
    • 18744367544 scopus 로고    scopus 로고
    • Clustering and conservation patterns of human microRNAs
    • Altuvia Y., et al. Clustering and conservation patterns of human microRNAs. Nucleic Acids Res. 33 (2005) 2697-2706
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2697-2706
    • Altuvia, Y.1
  • 5
    • 47949086531 scopus 로고    scopus 로고
    • Conifers have a unique small RNA silencing signature
    • Dolgosheina E.V., et al. Conifers have a unique small RNA silencing signature. RNA 14 (2008) 1508-1515
    • (2008) RNA , vol.14 , pp. 1508-1515
    • Dolgosheina, E.V.1
  • 7
    • 33745279055 scopus 로고    scopus 로고
    • Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
    • Henderson I.R., et al. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat. Genet. 38 (2006) 721-725
    • (2006) Nat. Genet. , vol.38 , pp. 721-725
    • Henderson, I.R.1
  • 8
    • 0030801551 scopus 로고    scopus 로고
    • Taxol biosynthesis: an update
    • Hezari M., and Croteau R. Taxol biosynthesis: an update. Planta Med. 63 (1997) 291-295
    • (1997) Planta Med. , vol.63 , pp. 291-295
    • Hezari, M.1    Croteau, R.2
  • 9
    • 57149085481 scopus 로고    scopus 로고
    • Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
    • Hoen P.A.C., et al. Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res. (2008) gkn705
    • (2008) Nucleic Acids Res.
    • Hoen, P.A.C.1
  • 10
    • 0003671040 scopus 로고
    • (Georg, G.I., Chen, T.T., Ojima, I., Vyas, D.M.(Georg, G.I., Chen, T.T., Ojima, I. and Vyas, D.M.s). Georg G.I., Chen T.T., Ojima I., and Vyas D.M. (Eds), American Chemical Society, Washington, DC
    • Holmes F.A., Kudelka A.P., Kavanagh J.J., Huber M.H., Ajani J.A., and Valero V. (Georg, G.I., Chen, T.T., Ojima, I., Vyas, D.M.(Georg, G.I., Chen, T.T., Ojima, I. and Vyas, D.M.s). In: Georg G.I., Chen T.T., Ojima I., and Vyas D.M. (Eds). Taxoid Anticancer Agents: Basic Science and Current Status (1995), American Chemical Society, Washington, DC
    • (1995) Taxoid Anticancer Agents: Basic Science and Current Status
    • Holmes, F.A.1    Kudelka, A.P.2    Kavanagh, J.J.3    Huber, M.H.4    Ajani, J.A.5    Valero, V.6
  • 11
    • 0033524365 scopus 로고    scopus 로고
    • The kinetics of taxoid accumulation in cell suspension cultures of Taxus following elicitation with methyl jasmonate
    • Ketchum R.E.B., Gibson D.M., Croteau R.B., and Shuler M.L. The kinetics of taxoid accumulation in cell suspension cultures of Taxus following elicitation with methyl jasmonate. Biotechnol. Bioeng. 62 (1999) 97-105
    • (1999) Biotechnol. Bioeng. , vol.62 , pp. 97-105
    • Ketchum, R.E.B.1    Gibson, D.M.2    Croteau, R.B.3    Shuler, M.L.4
  • 12
    • 33749404806 scopus 로고    scopus 로고
    • MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    • Lu C., et al. MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res. 16 (2006) 1276-1288
    • (2006) Genome Res. , vol.16 , pp. 1276-1288
    • Lu, C.1
  • 13
    • 34548491177 scopus 로고    scopus 로고
    • MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
    • Lu S.F., Sun Y.H., Amerson H., and Chiang V.L. MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development. Plant J. 51 (2007) 1077-1098
    • (2007) Plant J. , vol.51 , pp. 1077-1098
    • Lu, S.F.1    Sun, Y.H.2    Amerson, H.3    Chiang, V.L.4
  • 14
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis
    • Lu S.F., Sun Y.H., Shi R., Clark C., Li L.G., and Chiang V.L. Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 17 (2005) 2186-2203
    • (2005) Plant Cell , vol.17 , pp. 2186-2203
    • Lu, S.F.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.G.5    Chiang, V.L.6
  • 15
    • 0030060485 scopus 로고    scopus 로고
    • Methyl jasmonate induced production of taxol in suspension cultures of Taxus cuspidata: ethylene interaction and induction models
    • Mirjalili N., and Linden J.C. Methyl jasmonate induced production of taxol in suspension cultures of Taxus cuspidata: ethylene interaction and induction models. Biotechnol. Prog. 12 (1996) 110-118
    • (1996) Biotechnol. Prog. , vol.12 , pp. 110-118
    • Mirjalili, N.1    Linden, J.C.2
  • 16
    • 41649102715 scopus 로고    scopus 로고
    • Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    • Morin R.D., et al. Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res. 18 (2008) 571-584
    • (2008) Genome Res. , vol.18 , pp. 571-584
    • Morin, R.D.1
  • 17
    • 34247364093 scopus 로고    scopus 로고
    • Mechanisms of microRNA-mediated gene regulation in animal cells
    • Nilsen T.W. Mechanisms of microRNA-mediated gene regulation in animal cells. Trends Genet. 23 (2007) 243-249
    • (2007) Trends Genet. , vol.23 , pp. 243-249
    • Nilsen, T.W.1
  • 18
    • 44649126240 scopus 로고    scopus 로고
    • Evidence for stage-specific modulation of specific microRNAs (miRNAs) and miRNA processing components in zygotic embryo and female gametophyte of loblolly pine (Pinus taeda)
    • Oh T.J., Wartell R.M., Cairney J., and Pullman G.S. Evidence for stage-specific modulation of specific microRNAs (miRNAs) and miRNA processing components in zygotic embryo and female gametophyte of loblolly pine (Pinus taeda). New Phytologist 179 (2008) 67-80
    • (2008) New Phytologist , vol.179 , pp. 67-80
    • Oh, T.J.1    Wartell, R.M.2    Cairney, J.3    Pullman, G.S.4
  • 19
    • 39549118900 scopus 로고    scopus 로고
    • Mapping methyl jasmonate-mediated transcriptional reprogramming of metabolism and cell cycle progression in cultured Arabidopsis cells
    • Pauwels L., et al. Mapping methyl jasmonate-mediated transcriptional reprogramming of metabolism and cell cycle progression in cultured Arabidopsis cells. Proc. Natl. Acad. Sci. 105 (2008) 1380-1385
    • (2008) Proc. Natl. Acad. Sci. , vol.105 , pp. 1380-1385
    • Pauwels, L.1
  • 22
    • 2342450524 scopus 로고    scopus 로고
    • Molecular evolution of a microRNA cluster
    • Tanzer A., and Stadler P.F. Molecular evolution of a microRNA cluster. J. Mol. Biol. 339 (2004) 327-335
    • (2004) J. Mol. Biol. , vol.339 , pp. 327-335
    • Tanzer, A.1    Stadler, P.F.2
  • 23
    • 33749487425 scopus 로고    scopus 로고
    • MicroRNA regulates the expression of human cytochrome P4501B1
    • Tsuchiya Y., Nakajima M., Takagi S., Taniya T., and Yokoi T. MicroRNA regulates the expression of human cytochrome P4501B1. Cancer Res. 66 (2006) 9090-9098
    • (2006) Cancer Res. , vol.66 , pp. 9090-9098
    • Tsuchiya, Y.1    Nakajima, M.2    Takagi, S.3    Taniya, T.4    Yokoi, T.5
  • 24
    • 24644522173 scopus 로고    scopus 로고
    • Nitric oxide is involved in methyl jasmonate-induced defense responses and secondary metabolism activities of Taxus cells
    • Wang J.W., and Wu J.Y. Nitric oxide is involved in methyl jasmonate-induced defense responses and secondary metabolism activities of Taxus cells. Plant Cell Physiol. 46 (2005) 923-930
    • (2005) Plant Cell Physiol. , vol.46 , pp. 923-930
    • Wang, J.W.1    Wu, J.Y.2
  • 25
    • 34848897179 scopus 로고    scopus 로고
    • Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development
    • Wasternack C. Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development. Ann. Bot. 100 (2007) 681-697
    • (2007) Ann. Bot. , vol.100 , pp. 681-697
    • Wasternack, C.1
  • 26
    • 0029737648 scopus 로고    scopus 로고
    • Methyl jasmonate-induced overproduction of paclitaxel and baccatin III in Taxus cell suspension cultures
    • Yukimune Y., Tabata H., Higashi Y., and Hara Y. Methyl jasmonate-induced overproduction of paclitaxel and baccatin III in Taxus cell suspension cultures. Nat. Biotechnol. 14 (1996) 1129-1132
    • (1996) Nat. Biotechnol. , vol.14 , pp. 1129-1132
    • Yukimune, Y.1    Tabata, H.2    Higashi, Y.3    Hara, Y.4
  • 28
    • 29144527030 scopus 로고    scopus 로고
    • Plant microRNA: a small regulatory molecule with big impact
    • Zhang B.H., Pan X.P., Cobb G.P., and Anderson T.A. Plant microRNA: a small regulatory molecule with big impact. Dev. Biol. 289 (2006) 3-16
    • (2006) Dev. Biol. , vol.289 , pp. 3-16
    • Zhang, B.H.1    Pan, X.P.2    Cobb, G.P.3    Anderson, T.A.4
  • 30
    • 56649120500 scopus 로고    scopus 로고
    • Identification of soybean microRNAs and their targets
    • Zhang B.H., Pan X.P., and Stellwag E.J. Identification of soybean microRNAs and their targets. Planta 229 (2008) 161-182
    • (2008) Planta , vol.229 , pp. 161-182
    • Zhang, B.H.1    Pan, X.P.2    Stellwag, E.J.3
  • 32
    • 33845601726 scopus 로고    scopus 로고
    • MicroRNAs and their regulatory roles in animals and plants
    • Zhang B.H., Wang Q.L., and Pan X.P. MicroRNAs and their regulatory roles in animals and plants. J. Cell. Physiol. 210 (2007) 279-289
    • (2007) J. Cell. Physiol. , vol.210 , pp. 279-289
    • Zhang, B.H.1    Wang, Q.L.2    Pan, X.P.3
  • 33
    • 34250818778 scopus 로고    scopus 로고
    • Identification of cotton microRNAs and their targets
    • Zhang B.H., et al. Identification of cotton microRNAs and their targets. Gene 397 (2007) 26-37
    • (2007) Gene , vol.397 , pp. 26-37
    • Zhang, B.H.1
  • 34
    • 23144458275 scopus 로고    scopus 로고
    • MiRU: an automated plant miRNA target prediction server
    • Zhang Y.J. MiRU: an automated plant miRNA target prediction server. Nucl. Acids Res. 33 (2005) W701-W704
    • (2005) Nucl. Acids Res. , vol.33
    • Zhang, Y.J.1
  • 35
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucl. Acids Res. 31 (2003) 3406-3415
    • (2003) Nucl. Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.