DNA sensors with diamond as a promising alternative transducer material

Sensors

Volumn 9, Issue 7, 2009, Pages 5600-5636

  Vermeeren, Veronique ^a   Wenmackers, Sylvia ^b   Wagner, Patrick ^b   Michiels, Luc ^a  

^a HASSELT UNIVERSITY   (Belgium)

^b HASSELT UNIVERSITY   (Belgium)

Author keywords

Aptamers; Bioconjugates; Biosensors; Dna; Fluorescence sensors; Impedance sensors; Single nucleotide mismatch; Spr

Indexed keywords

APTAMERS; BIOCONJUGATES; FLUORESCENCE SENSORS; IMPEDANCE SENSORS; SINGLE NUCLEOTIDES; SPR;

DNA; SENSORS; SILICON;

BIOSENSORS;

EID: 77952479634     PISSN: 14248220     EISSN: None     Source Type: Journal    
DOI: 10.3390/s90705600     Document Type: Review

References (52)

1. Gorton, L.O. Comprehensive Analytical Chemistry; Elsevier Science: Amsterdam, The Netherlands, 2005.
2. Häussling, L.; Michel, B.; Ringsdorf, R.; Rohrer, H. Direct observation of streptavidin specifically adsorbed on biotin-functionalized self-assembled monolayers with the scanning tunneling microscope. Angew. Chem. Int. Ed. 1991, 30, 569-572.
3. Rasmussen, S.R.; Larsen, M.R.; Rasmussen, S.E. Covalent immobilization of DNA onto polystyrene microwells: The molecules are only bound at the 5' end. Anal. Biochem. 1991, 198, 138-142.
4. Hashimoto, K.; Ito, K.; Ishimori, Y. Sequence-specific gene detection with a gold electrode modified with DNA probes and an electrochemically active dye. Anal. Chem. 1994, 66, 3830-3833.
5. Strother, T.; Cai, W.; Zhao, X.S.; Hamers, R.J.; Smith, L.M. Synthesis and characterization of DNA modified silicon (111) surfaces. J. Am. Chem. Soc. 2000, 122, 1205-1209.
6. Kremsky, J.N.; Wooters, J.L.; Dougherty, J.P.; Meyers, R.E.; Collins, M.; Brown, E.L. Immobilization of DNA via oligonucleotides containing an aldehyde or carboxylic acid group at the 5' terminus. Nucleic Acids Res. 1987, 15, 2891-2909.
7. Yang, W.; Auciello, O.; Butler, J.E.; Cai, W.; Carlisle, J.A.; Gerbi, J.E.; Gruen, D.M.; Knickerbocker, T.; Lasseter, T.L.; Russell, J.N., Jr.; Smith, L.M.; Hamers, R.J. DNA-modified nanocrystalline diamond thin-films as stable, biologically active substrates. Nat. Mater. 2002, 1, 253-257.
8. Nebel, C.E.; Shin, D.; Rezek, B.; Tokuda, N.; Uetsuka, H.; Watanabe, H. Diamond and biology. J. R. Soc. Interface 2007, 4, 439-461.
9. Davidson, J.L. Synthetic Diamond: Emerging CVD Science and Technology; Wiley-Interscience: New York, NY, USA, 1994.
10. Wolfe, C.M.; Holonyak, N., Jr.; Stillman, G.E. Physical properties of semiconductors; Prentice- Hall, Inc.: Upper Saddle River, NJ, USA, 2007.
11. Millan, K.M.; Spurmanis, A.J.; Mikkelsen, S.R. Covalent immobilization of DNA into glassy- carbon electrodes. Electroanalysis 1992, 4, 929-932.
12. Pierson, H.O. Handbook of Carbon, Graphite, Diamond and Fullerenes; Noyes Publications: Park Ridge, NJ, USA, 1993.
13. Zaitsev, A.M. Optical Properties of Diamond: A Data Handbook; Springer-Verlag: Berlin, Germany, 2001.
14. Wilks, J.; Wilks, E. Properties and Applications of Diamond; Butterworth-Heinemann: Oxford, UK, 1991.
15. Bundy, F.B.; Hall, H.T.; Strong, H.M.; Wentorf, R.H., Jr. Man made diamonds. Nature 1955, 176, 51-55.
16. Lee, S.T.; Lin, Z.; Jiang, X. CVD diamond films: nucleation and growth. Mater. Sci. Eng. 1999, 25, 123-154.
17. May, P.W. Diamond thin films: a 21st-century material. Phil. Trans. R. Soc. Lond. A 2000, 358, 473-495.
18. Liu, H.; Dandy, D.S. Diamond Chemical Vapour Deposition: Nucleation and Early Growth Stages; Noyes Publications: Park Ridge, NJ, USA, 1993.
19. Williams, O.A.; Nesládek, M. Growth and properties of nanocrystalline diamond films. Phys. Stat. Sol. 2006, 203, 3375-3386.
20. Granger, M.C.; Xu, J.; Strojek, J.W.; Swain, G.M. Polycrystalline diamond electrodes: basic properties and applications as amperometric detectors in flow injection analysis and liquid chromatography. Anal. Chim. Acta 1999, 397, 145-161.
21. Maier, F.; Riedel, M.; Mantel, B.; Ristein, J.; Ley, L. Origin of surface conductivity in diamond. Phys. Rev. Lett. 2000, 85, 3472-3475.
22. Nebel, C.E.; Rezek, B.; Shin, D.; Watanabe, H. Surface electronic properties of H-terminated diamond in contact with adsorbates and electrolytes. Phys. Stat. Sol. 2006, 203, 3273-3298.
23. Chakrapani, V.; Angus, J.C.; Anderson, A.B.; Wolter, S.D.; Stoner, B.R.; Sumanasekera, G.U. Charge transfer equilibria between diamond and an aqueous oxygen electrochemical redox couple. Science 2007, 318, 1424-1430.
24. Koizumi, S.; Kamo, M.; Sato, Y.; Ozaki, H.; Inuzuka, T. Growth and characterization of phosphorous doped (111) homoepitaxial diamond thin films. Appl. Phys. Lett. 1997, 71, 1065-1067.
25. Davis, R.F. Diamond Films and Coatings: Development, Properties and Applications; Noyes Publications: Park Ridge, NJ, USA, 1992.
26. Mumm, D.R.; Faber, K.T.; Drory, M.D.; Gardinier, C.F. High-temperature hardness of chemically vapor-deposited diamond. J. Am. Ceram. Soc. 1993, 76, 238-240.
27. Takahashi, K.; Tanga, M.; Takai, O.; Okamura, H. DNA bonding to diamond. Bio. Ind. 2000, 17, 44-51.
28. Ushizawa, K.; Sato, Y.; Mitsumori, T.; Machinami, T.; Ueda, T.; Ando, T. Covalent immobilization of DNA on diamond and its verification by diffuse reflectance infrared spectroscopy. Chem. Phys. Lett. 2002, 351, 105-108.
29. Wang, J.; Firestone, M.A.; Auciello, O.; Carlisle, J.A. Functionalization of ultrananocrystalline diamond films by electrochemical reduction of aryldiazonium salts. Langmuir 2004, 20, 450-456.
30. Christiaens, P.; Vermeeren, V.; Wenmackers, S.; Daenen, M.; Haenen, K.; Nesladek, M.; vandeVen, M.; Ameloot, M.; Michiels, L.; Wagner, P. EDC-mediated DNA attachment to nanocrystalline CVD diamond films. Biosens. Bioelectron. 2006, 22, 170-177.
31. Vermeeren, V.; Wenmackers, S.; Daenen, M.; Haenen, K.; Williams, O.A.; Ameloot, M.; Vande, V.M.; Wagner, P.; Michiels, L. Topographical and functional characterization of the ssDNA probe layer generated through EDC-mediated covalent attachment to nanocrystalline diamond using fluorescence microscopy. Langmuir 2008, 24, 9125-9134.
32. Gu, H.; Su, X.; Loh, K.P. Electrochemical impedance sensing of DNA hybridization on conducting polymer film-modified diamond. J. Phys. Chem. B 2005, 109, 13611-13618.
33. Nichols, B.M.; Butler, J.E.; Russell, J.N., Jr.; Hamers, R.J. Photochemical functionalization of hydrogen-terminated diamond surfaces: a structural and mechanistic study. J. Phys. Chem. B 2005, 109, 20938-20947.
34. Yang, W.; Butler, J.E.; Russell, J.N., Jr.; Hamers, R.J. Interfacial electrical properties of DNA- modified diamond thin films: intrinsic response and hybridization-induced field effects. Langmuir 2004, 20, 6778-6787.
35. Vermeeren, V.; Bijnens, N.; Wenmackers, S.; Daenen, M.; Haenen, K.; Williams, O.A.; Ameloot, M.; van de Ven, M.; Wagner, P.; Michiels, L. Towards a real-time, label-free, diamond-based DNA sensor. Langmuir 2007, 23, 13193-13202.
36. D'Orazio, P. Biosensors in clinical chemistry. Clin. Chim. Acta 2003, 334, 41-69.
37. Ye, Y.K.; Zhao, J.H.; Yan, F.; Zhu, Y.L.; Ju, H.X. Electrochemical behavior and detection of hepatitis B virus DNA PCR production at gold electrode. Biosens. Bioelectron. 2003, 18, 1501-1508.
38. Wang, J.; Kawde, A.N.; Jan, M.R. Carbon-nanotube-modified electrodes for amplified enzyme- based electrical detection of DNA hybridization. Biosens. Bioelectron. 2004, 20, 995-1000.
39. Park, S.J.; Taton, T.A.; Mirkin, C.A. Array-based electrical detection of DNA with nanoparticle probes. Science 2002, 295, 1503-1506.
40. Cai, W.; Peck, J.R.; van der Weide, D.W.; Hamers, R.J. Direct electrical detection of hybridization at DNA-modified silicon surfaces. Biosens. Bioelectron. 2004, 19, 1013-1019.
41. Keighley, S.D.; Estrela, P.; Li, P.; Migliorato, P. Optimization of label-free DNA detection with electrochemical impedance spectroscopy using PNA probes. Biosens. Bioelectron. 2008, 24, 912-917.
42. Young, H.D.; Freedman, R.A. University Physics, 10th ed.; Addison Wesley: Boston, MA, USA, 2000.
43. Ingebrandt, S.; Offenhäusser, A. Label-free detection of DNA using field-effect transistors. Phys. Stat. Sol. 2006, 203, 3399-3411.
44. Song, K.S.; Zhang, G.J.; Nakamura, Y.; Furukawa, K.; Hiraki, T.; Yang, J.H.; Funatsu, T.; Ohdomari, I.; Kawarada, H. Label-free DNA sensors using ultrasensitive diamond field-effect transistors in solution. Phys. Rev. E. Stat. Nonlin. Soft. Matter Phys. 2006, 74, 041919.
45. Schena, M.; Shalon, D.; Davis, R.W.; Brown, P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995, 270, 467-470.
46. Wu, C.F.; Valdes, J.J.; Bentley, W.E.; Sekowski, J.W. DNA microarray for discrimination between pathogenic 0157:H7 EDL933 and non-pathogenic Escherichia Coli strains. Biosens. Bioelectron. 2003, 19, 1-8.
47. Schwonbeck, S.; Krause-Griep, A.; Gajovic-Eichelmann, N.; Ehrentreich-Forster, E.; Meinl, W.; Glatt, H.; Bier, F.F. Cohort analysis of a single nucleotide polymorphism on DNA chips. Biosens. Bioelectron. 2004, 20, 956-966.
48. Bernhard, B.; Lengeler, B. Electronic Structure of Noble Metals and Polariton-Mediated Light Scattering; Springer-Verlag: Berlin, Germany, 1978.
49. Flanagan, M.T.; Pantell, R.H. Surface plasmon resonance and immunosensors. Electron. Lett. 1984, 20, 968-970.
50. Wang, R.; Tombelli, S.; Minunni, M.; Spiriti, M.M.; Mascini, M. Immobilisation of DNA probes for the development of SPR-based sensing. Biosens. Bioelectron. 2004, 20, 967-974.
51. Sauerbrey, G. Verwendung von schwingquarzen zur wägung dünner schichten und zur mikrowägung. Z. Phys. 1959, 155, 206-222.
52. Feng, K.; Li, J.; Jiang, J.H.; Shen, G.L.; Yu, R.Q. QCM detection of DNA targets with single-base mutation based on DNA ligase reaction and biocatalyzed deposition amplification. Biosens. Bioelectron. 2007, 22, 1651-1657.