메뉴 건너뛰기




Volumn 24, Issue 10, 2010, Pages 973-979

Memories of lost enhancers

Author keywords

CD4; Chromatin; Epigenetics; Gene regulation; T cell development; Transcription

Indexed keywords

ENHANCER REGION; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; HUMAN; NONHUMAN; PRIORITY JOURNAL; REVIEW; TRANSCRIPTION REGULATION;

EID: 77952415942     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.1930610     Document Type: Review
Times cited : (18)

References (45)
  • 1
    • 0033861846 scopus 로고    scopus 로고
    • β-globin Gene switching and DNase I sensitivity of the endogenous β-globin locus in mice do not require the locus control region
    • Bender MA, Bulger M, Close J, Groudine M. 2000. β-Globin gene switching and DNase I sensitivity of the endogenous β-globin locus in mice do not require the locus control region. Mol Cell 5: 387-393. (Pubitemid 30628095)
    • (2000) Molecular Cell , vol.5 , Issue.2 , pp. 387-393
    • Bender, M.A.1    Bulger, M.2    Close, J.3    Groudine, M.4
  • 2
    • 71349083638 scopus 로고    scopus 로고
    • Histone H1 binding is inhibited by histone variant H3.3
    • Braunschweig U, Hogan GJ, Pagie L, van Steensel B. 2009. Histone H1 binding is inhibited by histone variant H3.3. EMBO J 28: 3635-3645.
    • (2009) EMBO J , vol.28 , pp. 3635-3645
    • Braunschweig, U.1    Hogan, G.J.2    Pagie, L.3    Van Steensel, B.4
  • 3
    • 34247341747 scopus 로고    scopus 로고
    • H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state
    • doi: 10.1371/journal.pbio.0050081
    • Brickner DG, Cajigas I, Fondufe-Mittendorf Y, Ahmed S, Lee PC, Widom J, Brickner JH. 2007. H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state. PLoS Biol 5: e81. doi: 10.1371/journal.pbio.0050081.
    • (2007) PLoS Biol , vol.5
    • Brickner, D.G.1    Cajigas, I.2    Fondufe-Mittendorf, Y.3    Ahmed, S.4    Lee, P.C.5    Widom, J.6    Brickner, J.H.7
  • 4
    • 0037340215 scopus 로고    scopus 로고
    • Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process
    • DOI 10.1038/ni887
    • Bruniquel D, Schwartz RH. 2003. Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process. Nat Immunol 4: 235-240. (Pubitemid 36322132)
    • (2003) Nature Immunology , vol.4 , Issue.3 , pp. 235-240
    • Bruniquel, D.1    Schwartz, R.H.2
  • 5
    • 77149139820 scopus 로고    scopus 로고
    • Enhancers: The abundance and function of regulatory sequences beyond promoters
    • Bulger M, Groudine M. 2010. Enhancers: The abundance and function of regulatory sequences beyond promoters. Dev Biol 339: 250-257.
    • (2010) Dev Biol , vol.339 , pp. 250-257
    • Bulger, M.1    Groudine, M.2
  • 7
    • 66049116723 scopus 로고    scopus 로고
    • A 220-nucleotide deletion of the intronic enhancer reveals an epigenetic hierarchy in immunoglobulin heavy chain locus activation
    • Chakraborty T, Perlot T, Subrahmanyam R, Jani A, Goff PH, Zhang Y, Ivanova I, Alt FW, Sen R. 2009. A 220-nucleotide deletion of the intronic enhancer reveals an epigenetic hierarchy in immunoglobulin heavy chain locus activation. J Exp Med 206: 1019-1027.
    • (2009) J Exp Med , vol.206 , pp. 1019-1027
    • Chakraborty, T.1    Perlot, T.2    Subrahmanyam, R.3    Jani, A.4    Goff, P.H.5    Zhang, Y.6    Ivanova, I.7    Alt, F.W.8    Sen, R.9
  • 8
    • 77950484789 scopus 로고    scopus 로고
    • Epigenetic propagation of CD4 expression is established by the Cd4 proximal enhancer in helper T cells
    • Chong MMW, Simpson N, Ciofani M, Chen G, Collins A, Littman DR. 2010. Epigenetic propagation of CD4 expression is established by the Cd4 proximal enhancer in helper T cells. Genes & Dev 24: 659-669.
    • (2010) Genes & Dev , vol.24 , pp. 659-669
    • Chong, M.M.W.1    Simpson, N.2    Ciofani, M.3    Chen, G.4    Collins, A.5    Littman, D.R.6
  • 9
    • 70450222694 scopus 로고    scopus 로고
    • A model for all genomes: The role of transcription factories
    • Cook PR. 2010. A model for all genomes: The role of transcription factories. J Mol Biol 395: 1-10.
    • (2010) J Mol Biol , vol.395 , pp. 1-10
    • Cook, P.R.1
  • 10
    • 58049191558 scopus 로고    scopus 로고
    • Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
    • Cui K, Zang C, Roh TY, Schones DE, Childs RW, Peng W, Zhao K. 2009. Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 4: 80-93.
    • (2009) Cell Stem Cell , vol.4 , pp. 80-93
    • Cui, K.1    Zang, C.2    Roh, T.Y.3    Schones, D.E.4    Childs, R.W.5    Peng, W.6    Zhao, K.7
  • 11
    • 0031772366 scopus 로고    scopus 로고
    • Exploring functional redundancy in the immunoglobulin mu heavy-chain gene enhancer
    • Dang W, Nikolajczyk BS, Sen R. 1998. Exploring functional redundancy in the immunoglobulin mu heavy-chain gene enhancer. Mol Cell Biol 18: 6870-6878. (Pubitemid 28500574)
    • (1998) Molecular and Cellular Biology , vol.18 , Issue.11 , pp. 6870-6878
    • Dang, W.1    Nikolajczyk, B.S.2    Sen, R.3
  • 13
    • 0032185226 scopus 로고    scopus 로고
    • The β-globin LCR is not necessary for an open chromatin structure or developmentally regulated transcription of the native mouse b-globin locus
    • Epner E, Reik A, Cimbora D, Telling A, Bender MA, Fiering S, Enver T, Martin DI, Kennedy M, Keller G, et al. 1998. The β-globin LCR is not necessary for an open chromatin structure or developmentally regulated transcription of the native mouse b-globin locus. Mol Cell 2: 447-455.
    • (1998) Mol Cell , vol.2 , pp. 447-455
    • Epner, E.1    Reik, A.2    Cimbora, D.3    Telling, A.4    Bender, M.A.5    Fiering, S.6    Enver, T.7    Martin, D.I.8    Kennedy, M.9    Keller, G.10
  • 14
    • 0034048586 scopus 로고    scopus 로고
    • To be or not to be active: The stochastic nature of enhancer action
    • DOI 10.1002/(SICI)1521-1878(200004)22:4<381::AID-BIES8>3.0.CO;2-E
    • Fiering S, Whitelaw E, Martin DI. 2000. To be or not to be active: The stochastic nature of enhancer action. Bioessays 22: 381-387. (Pubitemid 30213500)
    • (2000) BioEssays , vol.22 , Issue.4 , pp. 381-387
    • Fiering, S.1    Whitelaw, E.2    Martin, D.I.K.3
  • 15
    • 0024291350 scopus 로고
    • Stable propagation of the active transcriptional state of an immunoglobulin μ gene requires continuous enhancer function
    • Grosschedl R, Marx M. 1988. Stable propagation of the active transcriptional state of an immunoglobulin μ gene requires continuous enhancer function. Cell 55: 645-654.
    • (1988) Cell , vol.55 , pp. 645-654
    • Grosschedl, R.1    Marx, M.2
  • 16
    • 0031030535 scopus 로고    scopus 로고
    • Extension of chromatin accessibility by nuclear matrix attachment regions
    • DOI 10.1038/385269a0
    • Jenuwein T, Forrester WC, Fernandez-Herrero LA, Laible G, Dull M, Grosschedl R. 1997. Extension of chromatin accessibility by nuclear matrix attachment regions. Nature 385: 269-272. (Pubitemid 27043728)
    • (1997) Nature , vol.385 , Issue.6613 , pp. 269-272
    • Jenuwein, T.1    Forrester, W.C.2    Fernandez-Herrero, L.A.3    Laible, G.4    Dull, M.5    Grosschedl, R.6
  • 17
    • 68149150830 scopus 로고    scopus 로고
    • H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
    • Jin C, Zang C, Wei G, Cui K, Peng W, Zhao K, Felsenfeld G. 2009. H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 41: 941-945.
    • (2009) Nat Genet , vol.41 , pp. 941-945
    • Jin, C.1    Zang, C.2    Wei, G.3    Cui, K.4    Peng, W.5    Zhao, K.6    Felsenfeld, G.7
  • 20
    • 0034605064 scopus 로고    scopus 로고
    • Chromatin remodeling by the T cell receptor (TCR)-β gene enhancer during early T cell development: Implications for the control of TCR-β locus recombination
    • Mathieu N, Hempel WM, Spicuglia S, Verthuy C, Ferrier P. 2000. Chromatin remodeling by the T cell receptor (TCR)-β gene enhancer during early T cell development: Implications for the control of TCR-β locus recombination. J Exp Med 192: 625-636.
    • (2000) J Exp Med , vol.192 , pp. 625-636
    • Mathieu, N.1    Hempel, W.M.2    Spicuglia, S.3    Verthuy, C.4    Ferrier, P.5
  • 21
    • 0034695501 scopus 로고    scopus 로고
    • A role for histone acetylation in the developmental regulation of V(D)J recombination
    • DOI 10.1126/science.287.5452.495
    • McMurry MT, Krangel MS. 2000. A role for histone acetylation in the developmental regulation of VDJ recombination. Science 287: 495-498. (Pubitemid 33595259)
    • (2000) Science , vol.287 , Issue.5452 , pp. 495-498
    • McMurry, M.T.1    Krangel, M.S.2
  • 22
    • 77649140924 scopus 로고    scopus 로고
    • Methylation of H3K4 Is required for inheritance of active transcriptional states
    • Muramoto T, Muller I, Thomas G, Melvin A, Chubb JR. 2010. Methylation of H3K4 Is required for inheritance of active transcriptional states. Curr Biol 20: 397-406.
    • (2010) Curr Biol , vol.20 , pp. 397-406
    • Muramoto, T.1    Muller, I.2    Thomas, G.3    Melvin, A.4    Chubb, J.R.5
  • 24
    • 37749051130 scopus 로고    scopus 로고
    • Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription
    • Ng RK, Gurdon JB. 2008. Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription. Nat Cell Biol 10: 102-109.
    • (2008) Nat Cell Biol , vol.10 , pp. 102-109
    • Ng, R.K.1    Gurdon, J.B.2
  • 26
    • 39049092286 scopus 로고    scopus 로고
    • β-Globin regulation and long-range interactions
    • Palstra RJ, de Laat W, Grosveld F. 2008. β-Globin regulation and long-range interactions. Adv Genet 61: 107-142.
    • (2008) Adv Genet , vol.61 , pp. 107-142
    • Palstra, R.J.1    De Laat, W.2    Grosveld, F.3
  • 27
    • 38349185928 scopus 로고    scopus 로고
    • Effects of molecular memory and bursting on fluctuations in gene expression
    • Pedraza JM, Paulsson J. 2008. Effects of molecular memory and bursting on fluctuations in gene expression. Science 319: 339-343.
    • (2008) Science , vol.319 , pp. 339-343
    • Pedraza, J.M.1    Paulsson, J.2
  • 28
    • 0031708415 scopus 로고    scopus 로고
    • The locus control region is necessary for gene expression in the human β-globin locus but not the maintenance of an open chromatin structure in erythroid cells
    • Reik A, Telling A, Zitnik G, Cimbora D, Epner E, Groudine M. 1998. The locus control region is necessary for gene expression in the human β-globin locus but not the maintenance of an open chromatin structure in erythroid cells. Mol Cell Biol 18: 5992-6000. (Pubitemid 28450550)
    • (1998) Molecular and Cellular Biology , vol.18 , Issue.10 , pp. 5992-6000
    • Reik, A.1    Telling, A.2    Zitnik, G.3    Cimbora, D.4    Epner, E.5    Groudine, M.6
  • 29
    • 0032827115 scopus 로고    scopus 로고
    • Variegated expression of the endogenous immunoglobulin heavy-chain gene in the absence of the intronic locus control region
    • Ronai D, Berru M, Shulman MJ. 1999. Variegated expression of the endogenous immunoglobulin heavy-chain gene in the absence of the intronic locus control region. Mol Cell Biol 19: 7031-7040. (Pubitemid 29441885)
    • (1999) Molecular and Cellular Biology , vol.19 , Issue.10 , pp. 7031-7040
    • Ronai, D.1    Berru, M.2    Shulman, M.J.3
  • 30
    • 2942618700 scopus 로고    scopus 로고
    • The epigenetic stability of the locus control region-deficient IgH locus in mouse hybridoma cells is a clonally varying, heritable feature
    • DOI 10.1534/genetics.167.1.411
    • Ronai D, Berru M, Shulman MJ. 2004. The epigenetic stability of the locus control region-deficient IgH locus in mouse hybridoma cells is a clonally varying, heritable feature. Genetics 167: 411-421. (Pubitemid 38736398)
    • (2004) Genetics , vol.167 , Issue.1 , pp. 411-421
    • Ronai, D.1    Berru, M.2    Shulman, M.J.3
  • 31
    • 54949157851 scopus 로고    scopus 로고
    • Re-positioning genes to the nuclear envelope in mammalian cells: Impact on transcription
    • Ruault M, Dubarry M, Taddei A. 2008. Re-positioning genes to the nuclear envelope in mammalian cells: Impact on transcription. Trends Genet 24: 574-581.
    • (2008) Trends Genet , vol.24 , pp. 574-581
    • Ruault, M.1    Dubarry, M.2    Taddei, A.3
  • 34
    • 5444237577 scopus 로고    scopus 로고
    • Long-range intrachromosomal interactions in the T helper type 2 cytokine locus
    • Spilianakis CG, Flavell RA. 2004. Long-range intrachromosomal interactions in the T helper type 2 cytokine locus. Nat Immunol 5: 1017-1027.
    • (2004) Nat Immunol , vol.5 , pp. 1017-1027
    • Spilianakis, C.G.1    Flavell, R.A.2
  • 35
    • 20444494936 scopus 로고    scopus 로고
    • Interchromosomal associations between alternatively expressed loci
    • Spilianakis CG, Lalioti MD, Town T, Lee GR, Flavell RA. 2005. Interchromosomal associations between alternatively expressed loci. Nature 435: 637-645.
    • (2005) Nature , vol.435 , pp. 637-645
    • Spilianakis, C.G.1    Lalioti, M.D.2    Town, T.3    Lee, G.R.4    Flavell, R.A.5
  • 37
    • 67649766870 scopus 로고    scopus 로고
    • Transcription factories: Gene expression in unions?
    • Sutherland H, Bickmore WA. 2009. Transcription factories: Gene expression in unions? Nat Rev Genet 10: 457-466.
    • (2009) Nat Rev Genet , vol.10 , pp. 457-466
    • Sutherland, H.1    Bickmore, W.A.2
  • 38
    • 52949133457 scopus 로고    scopus 로고
    • The meaning of gene positioning
    • Takizawa T, Meaburn KJ, Misteli T. 2008. The meaning of gene positioning. Cell 135: 9-13.
    • (2008) Cell , vol.135 , pp. 9-13
    • Takizawa, T.1    Meaburn, K.J.2    Misteli, T.3
  • 39
    • 2942579099 scopus 로고    scopus 로고
    • Epigenetic gene silencing by Runx proteins
    • Taniuchi I, Littman DR. 2004. Epigenetic gene silencing by Runx proteins. Oncogene 23: 4341-4345.
    • (2004) Oncogene , vol.23 , pp. 4341-4345
    • Taniuchi, I.1    Littman, D.R.2
  • 40
    • 0035901508 scopus 로고    scopus 로고
    • Glucocorticoid-induced DNA demethylation and gene memory during development
    • Thomassin H, Flavin M, Espinas ML, Grange T. 2001. Glucocorticoid-induced DNA demethylation and gene memory during development. EMBO J 20: 1974-1983.
    • (2001) EMBO J , vol.20 , pp. 1974-1983
    • Thomassin, H.1    Flavin, M.2    Espinas, M.L.3    Grange, T.4
  • 43
    • 0022971145 scopus 로고
    • SV40 enhancer-binding factors are required at the establishment but not the maintenance step of enhancer-dependent transcriptional activation
    • Wang XF, Calame K. 1986. SV40 enhancer-binding factors are required at the establishment but not the maintenance step of enhancer-dependent transcriptional activation. Cell 47: 241-247. (Pubitemid 17181541)
    • (1986) Cell , vol.47 , Issue.2 , pp. 241-247
    • Wang, X.-F.1    Calame, K.2
  • 44
    • 0006281492 scopus 로고
    • Formation of stable transcription complexes as assayed by analysis of individual templates
    • Weintraub H. 1988. Formation of stable transcription complexes as assayed by analysis of individual templates. Proc Natl Acad Sci 85: 5819-5823.
    • (1988) Proc Natl Acad Sci , vol.85 , pp. 5819-5823
    • Weintraub, H.1
  • 45
    • 36148940618 scopus 로고    scopus 로고
    • S-S Synapsis during Class Switch Recombination Is Promoted by Distantly Located Transcriptional Elements and Activation-Induced Deaminase
    • DOI 10.1016/j.immuni.2007.09.007, PII S1074761307004608
    • Wuerffel R, Wang L, Grigera F, Manis J, Selsing E, Perlot T, Alt FW, Cogne M, Pinaud E, Kenter AL. 2007. S-S synapsis during class switch recombination is promoted by distantly located transcriptional elements and activation-induced deaminase. Immunity 27: 711-722. (Pubitemid 350110545)
    • (2007) Immunity , vol.27 , Issue.5 , pp. 711-722
    • Wuerffel, R.1    Wang, L.2    Grigera, F.3    Manis, J.4    Selsing, E.5    Perlot, T.6    Alt, F.W.7    Cogne, M.8    Pinaud, E.9    Kenter, A.L.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.