-
1
-
-
0031790171
-
A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor
-
DOI 10.1038/2960
-
S Basu RP Rambo J Strauss-Soukup JH Cate AR Ferré-D'Amaré SA Strobel JA Doudna 1998 A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor Nat Struct Biol 5 986 992 10.1038/2960 1:CAS:528:DyaK1cXntlSksL4%3D 9808044 (Pubitemid 28506632)
-
(1998)
Nature Structural Biology
, vol.5
, Issue.11
, pp. 986-992
-
-
Basu, S.1
Rambo, R.P.2
Strauss-Soukup, J.3
Cate, J.H.4
Ferre-D'Amare, A.R.5
Strobel, S.A.6
Doudna, J.A.7
-
2
-
-
0037168445
-
Ribozyme-catalyzed excision of targeted sequences from within RNAs
-
DOI 10.1021/bi0267386
-
MA Bell AK Johnson SM Testa 2002 Ribozyme-catalyzed excision of targeted sequences from within RNAs Biochemistry 41 15327 15333 10.1021/bi0267386 1:CAS:528:DC%2BD38XovFygt7c%3D 12484771 (Pubitemid 36008142)
-
(2002)
Biochemistry
, vol.41
, Issue.51
, pp. 15327-15333
-
-
Bell, M.A.1
Johnson, A.K.2
Testa, S.M.3
-
3
-
-
57749185463
-
Parallel adaptations to high temperatures in the Archaean eon
-
10.1038/nature07393 1:CAS:528:DC%2BD1cXhsFWmsb7N 19037246
-
B Boussau S Blanquart A Necsulea N Lartillot M Gouy 2008 Parallel adaptations to high temperatures in the Archaean eon Nature 456 942 945 10.1038/nature07393 1:CAS:528:DC%2BD1cXhsFWmsb7N 19037246
-
(2008)
Nature
, vol.456
, pp. 942-945
-
-
Boussau, B.1
Blanquart, S.2
Necsulea, A.3
Lartillot, N.4
Gouy, M.5
-
4
-
-
0031686486
-
Recombination, RNA evolution, and bifunctional RNA molecules isolated through chimeric SELEX
-
DOI 10.1017/S1355838298980542
-
DH Burke JH Willis 1998 Recombination, RNA evolution, and bifunctional RNA molecules isolated through chimeric SELEX RNA 4 1165 1175 10.1017/S1355838298980542 1:CAS:528:DyaK1cXlvFWkurw%3D 9740133 (Pubitemid 28413461)
-
(1998)
RNA
, vol.4
, Issue.9
, pp. 1165-1175
-
-
Burke, D.H.1
Willis, J.H.2
-
5
-
-
33746531165
-
Calcium(II)-dependent catalytic activity of the Azoarcus ribozyme: Testing the limits of resolution for in vitro selection
-
DOI 10.1016/j.biochi.2006.01.010, PII S0300908406000113
-
AS Burton N Lehman 2006 Calcium(II)-dependent catalytic activity of the Azoarcus ribozyme: testing the limits of resolution for in vitro selection Biochimie 88 819 825 10.1016/j.biochi.2006.01.010 1:CAS:528:DC%2BD28Xns12ksr4%3D 16494986 (Pubitemid 44142166)
-
(2006)
Biochimie
, vol.88
, Issue.7
, pp. 819-825
-
-
Burton, A.S.1
Lehman, N.2
-
6
-
-
64249122566
-
Gel purification of radiolabeled nucleic acids via phosphorimaging: Dip-N-Dot
-
10.1016/j.ab.2009.02.010 1:CAS:528:DC%2BD1MXkvVWnsb4%3D 19232314
-
AS Burton RA Madix N Vaidya CA Riley EJ Hayden A Chepetan C Dìaz Arenas BC Larson N Lehman 2009 Gel purification of radiolabeled nucleic acids via phosphorimaging: Dip-N-Dot Anal Biochem 388 351 352 10.1016/j.ab.2009.02.010 1:CAS:528:DC%2BD1MXkvVWnsb4%3D 19232314
-
(2009)
Anal Biochem
, vol.388
, pp. 351-352
-
-
Burton, A.S.1
Madix, R.A.2
Vaidya, N.3
Riley, C.A.4
Hayden, E.J.5
Chepetan, A.6
Arenas, C.7
Larson, B.C.8
Lehman, N.9
-
7
-
-
85045502002
-
Randomization of genes by PCR mutagenesis
-
1:CAS:528:DyaK3sXhs1Sr 1490172
-
RC Cadwell GF Joyce 1992 Randomization of genes by PCR mutagenesis PCR Methods Appl 2 28 33 1:CAS:528:DyaK3sXhs1Sr 1490172
-
(1992)
PCR Methods Appl
, vol.2
, pp. 28-33
-
-
Cadwell, R.C.1
Joyce, G.F.2
-
8
-
-
52649113859
-
Tetrahymena thermophila and Candida albicans group i intron-derived ribozymes can catalyze the trans-excision-splicing reaction
-
10.1093/nar/gkn507 1:CAS:528:DC%2BD1cXhtFWhsL7O 18684993
-
PP Dotson AK Johnson SM Testa 2008 Tetrahymena thermophila and Candida albicans group I intron-derived ribozymes can catalyze the trans-excision- splicing reaction Nucleic Acids Res 36 5281 5289 10.1093/nar/gkn507 1:CAS:528:DC%2BD1cXhtFWhsL7O 18684993
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5281-5289
-
-
Dotson, P.P.1
Johnson, A.K.2
Testa, S.M.3
-
9
-
-
0015133749
-
Selforganization of matter and the evolution of biological macromolecules
-
10.1007/BF00623322 1:CAS:528:DyaE38XjtFaksw%3D%3D 4942363
-
M Eigen 1971 Selforganization of matter and the evolution of biological macromolecules Naturwissenschaften 58 465 523 10.1007/BF00623322 1:CAS:528:DyaE38XjtFaksw%3D%3D 4942363
-
(1971)
Naturwissenschaften
, vol.58
, pp. 465-523
-
-
Eigen, M.1
-
10
-
-
0023754962
-
Gene synthesis
-
1:CAS:528:DyaL1MXpsFKnug%3D%3D 3140610
-
J Engels E Uhlmann 1988 Gene synthesis Adv Biochem Eng Biotechnol 37 73 127 1:CAS:528:DyaL1MXpsFKnug%3D%3D 3140610
-
(1988)
Adv Biochem Eng Biotechnol
, vol.37
, pp. 73-127
-
-
Engels, J.1
Uhlmann, E.2
-
11
-
-
0036669327
-
Montmorillonite catalysis of 30-50 mer oligonucleotides: Laboratory demonstration of potential steps in the origin of the RNA world
-
DOI 10.1023/A:1020543312109
-
JP Ferris 2002 Montmorillonite catalysis of 30-50 mer oligonucleotides: laboratory demonstration of potential steps in the origin of the RNA world Orig Life Evol Biosph 32 311 332 10.1023/A:1020543312109 1:CAS:528: DC%2BD38Xns1Shu7c%3D 12458736 (Pubitemid 35255172)
-
(2002)
Origins of Life and Evolution of the Biosphere
, vol.32
, Issue.4
, pp. 311-332
-
-
Ferris, J.P.1
-
12
-
-
0003604405
-
-
R. Gesteland T.R. Cech J. Atkins (eds). 3 Cold Spring Harbor Press New York
-
Gesteland R, Cech TR, Atkins J (eds) (2006) The RNA World, 3rd edn. Cold Spring Harbor Press, New York
-
(2006)
The RNA World
-
-
-
13
-
-
36849148382
-
The RNA world
-
10.1038/319618a0
-
W Gilbert 1986 The RNA world Nature 319 618 10.1038/319618a0
-
(1986)
Nature
, vol.319
, pp. 618
-
-
Gilbert, W.1
-
14
-
-
0020402387
-
Exaptation-A missing term in the science of form
-
SJ Gould ES Vrba 1982 Exaptation-A missing term in the science of form Paleobiology 8 4 15
-
(1982)
Paleobiology
, vol.8
, pp. 4-15
-
-
Gould, S.J.1
Vrba, E.S.2
-
15
-
-
33747378836
-
Self-Assembly of a Group I Intron from Inactive Oligonucleotide Fragments
-
DOI 10.1016/j.chembiol.2006.06.014, PII S1074552106002249
-
EJ Hayden N Lehman 2006 Self-assembly of a group I intron from inactive oligonucleotide fragments Chem Biol 13 909 918 10.1016/j.chembiol.2006.06.014 1:CAS:528:DC%2BD28XoslOhu7k%3D 16931340 (Pubitemid 44247779)
-
(2006)
Chemistry and Biology
, vol.13
, Issue.8
, pp. 909-918
-
-
Hayden, E.J.1
Lehman, N.2
-
16
-
-
27144523459
-
RNA-directed construction of structurally complex and active ligase ribozymes through recombination
-
DOI 10.1261/rna.2125305
-
EJ Hayden CA Riley AS Burton N Lehman 2005 RNA-directed construction of structurally complex and active ligase ribozymes through recombination RNA 11 1678 1687 10.1261/rna.2125305 1:CAS:528:DC%2BD2MXhtF2ktrnE 16177133 (Pubitemid 41505542)
-
(2005)
RNA
, vol.11
, Issue.11
, pp. 1678-1687
-
-
Hayden, E.J.1
Riley, C.A.2
Burton, A.S.3
Lehman, N.4
-
17
-
-
0029963656
-
A simple method for 3'-labeling of RNA
-
DOI 10.1093/nar/24.21.4360
-
Z Huang J Szostak 1996 A simple method for 3′-labeling of RNA Nucl Acids Res 24 4360 4361 10.1093/nar/24.21.4360 1:CAS:528:DyaK28XntF2ntLY%3D 8932396 (Pubitemid 26377359)
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.21
, pp. 4360-4361
-
-
Huang, Z.1
Szostak, J.W.2
-
18
-
-
67651166851
-
One RNA aptamer sequence, two structures: A collaborating pair that inhibits AMPA receptors
-
10.1093/nar/gkp284 1:CAS:528:DC%2BD1MXovVeksb0%3D 19417060
-
Z Huang W Pei Y Han S Jayaseelan A Shekhtman H Shi L Niu 2009 One RNA aptamer sequence, two structures: a collaborating pair that inhibits AMPA receptors Nucl Acids Res 37 4022 4032 10.1093/nar/gkp284 1:CAS:528: DC%2BD1MXovVeksb0%3D 19417060
-
(2009)
Nucl Acids Res
, vol.37
, pp. 4022-4032
-
-
Huang, Z.1
Pei, W.2
Han, Y.3
Jayaseelan, S.4
Shekhtman, A.5
Shi, H.6
Niu, L.7
-
19
-
-
0035906978
-
RNA-catalyzed RNA polymerization: Accurate and general RNA-templated primer extension
-
DOI 10.1126/science.1060786
-
WK Johnston PJ Unrau MS Lawrence ME Glasner DP Bartel 2001 RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension Science 292 1319 1325 10.1126/science.1060786 1:CAS:528:DC%2BD3MXjvVGjsbg%3D 11358999 (Pubitemid 32476210)
-
(2001)
Science
, vol.292
, Issue.5520
, pp. 1319-1325
-
-
Johnston, W.K.1
Unrau, P.J.2
Lawrence, M.S.3
Glasner, M.E.4
Bartel, D.P.5
-
20
-
-
0025828122
-
The rise and fall of the RNA world
-
1:CAS:528:DyaK3MXltlSgsL0%3D 1712228
-
GF Joyce 1991 The rise and fall of the RNA world New Biol 3 399 407 1:CAS:528:DyaK3MXltlSgsL0%3D 1712228
-
(1991)
New Biol
, vol.3
, pp. 399-407
-
-
Joyce, G.F.1
-
22
-
-
0037062978
-
The antiquity of RNA-based evolution
-
DOI 10.1038/418214a
-
GF Joyce 2002 The antiquity of RNA-based evolution Nature 418 214 221 10.1038/418214a 1:CAS:528:DC%2BD38XltFGmu7o%3D 12110897 (Pubitemid 34773780)
-
(2002)
Nature
, vol.418
, Issue.6894
, pp. 214-221
-
-
Joyce, G.F.1
-
23
-
-
0015392943
-
Self-organization of molecular systems and evolution of the genetic apparatus
-
10.1002/anie.197207981 1:CAS:528:DyaE3sXht1OgtA%3D%3D 4628613
-
H Kuhn 1972 Self-organization of molecular systems and evolution of the genetic apparatus Angew Chem Int Ed Engl 11 798 820 10.1002/anie.197207981 1:CAS:528:DyaE3sXht1OgtA%3D%3D 4628613
-
(1972)
Angew Chem Int Ed Engl
, vol.11
, pp. 798-820
-
-
Kuhn, H.1
-
24
-
-
0038369787
-
A case for the extreme antiquity of recombination
-
DOI 10.1007/s00239-003-2454-1
-
N Lehman 2003 A case for the extreme antiquity of recombination J Mol Evol 56 770 777 10.1007/s00239-003-2454-1 1:CAS:528:DC%2BD3sXkvVeqt74%3D 12911039 (Pubitemid 36549846)
-
(2003)
Journal of Molecular Evolution
, vol.56
, Issue.6
, pp. 770-777
-
-
Lehman, N.1
-
25
-
-
56149124653
-
A recombination-based model for the origin and early evolution of genetic information
-
10.1002/cbdv.200890159 1:CAS:528:DC%2BD1cXht1ClsL3F 18816523
-
N Lehman 2008 A recombination-based model for the origin and early evolution of genetic information Chem Biodivers 5 1707 1717 10.1002/cbdv. 200890159 1:CAS:528:DC%2BD1cXht1ClsL3F 18816523
-
(2008)
Chem Biodivers
, vol.5
, pp. 1707-1717
-
-
Lehman, N.1
-
26
-
-
0027525989
-
Evolution in vitro of an RNA enzyme with altered metal dependence
-
DOI 10.1038/361182a0
-
N Lehman GF Joyce 1993 Evolution in vitro of an RNA enzyme with altered metal dependence Nature 361 182 185 10.1038/361182a0 1:CAS:528: DyaK3sXhtF2rsrY%3D 8421526 (Pubitemid 23031357)
-
(1993)
Nature
, vol.361
, Issue.6408
, pp. 182-185
-
-
Lehman, N.1
Joyce, G.F.2
-
27
-
-
0037256766
-
In search of an RNA replicase ribozyme
-
DOI 10.1016/S1074-5521(03)00003-6
-
KE McGinness GF Joyce 2003 In search of an RNA replicase ribozyme Chem Biol 10 5 14 10.1016/S1074-5521(03)00003-6 1:CAS:528:DC%2BD3sXps1Smtg%3D%3D 12573693 (Pubitemid 36154469)
-
(2003)
Chemistry and Biology
, vol.10
, Issue.1
, pp. 5-14
-
-
McGinness, K.E.1
Joyce, G.F.2
-
28
-
-
0022845689
-
RNA catalysis and the origins of life
-
10.1016/S0022-5193(86)80149-7 1:CAS:528:DyaL2sXivVyrtQ%3D%3D 2442564
-
LE Orgel 1986 RNA catalysis and the origins of life J Theor Biol 123 127 149 10.1016/S0022-5193(86)80149-7 1:CAS:528:DyaL2sXivVyrtQ%3D%3D 2442564
-
(1986)
J Theor Biol
, vol.123
, pp. 127-149
-
-
Orgel, L.E.1
-
29
-
-
0032563297
-
Folding intermediates of a self-splicing RNA: Mispairing of the catalytic core
-
DOI 10.1006/jmbi.1998.1901
-
J Pan SA Woodson 1998 Folding intermediates of a self-splicing RNA: mispairing of the catalytic core J Mol Biol 280 597 609 10.1006/jmbi.1998.1901 1:CAS:528:DyaK1cXlt1eht7k%3D 9677291 (Pubitemid 28336368)
-
(1998)
Journal of Molecular Biology
, vol.280
, Issue.4
, pp. 597-609
-
-
Pan, J.1
Woodson, S.A.2
-
30
-
-
0034635353
-
Fast folding of a ribozyme by stabilizing core interactions: Evidence for multiple folding pathways in RNA
-
10.1006/jmbi.1999.3439 1:CAS:528:DC%2BD3cXotlSitA%3D%3D 10656822
-
J Pan ML Deras SA Woodson 2000 Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA J Mol Biol 296 133 144 10.1006/jmbi.1999.3439 1:CAS:528:DC%2BD3cXotlSitA%3D%3D 10656822
-
(2000)
J Mol Biol
, vol.296
, pp. 133-144
-
-
Pan, J.1
Deras, M.L.2
Woodson, S.A.3
-
31
-
-
0003075565
-
On the problems of evolution and biochemical information transfer
-
M. Kasha B. Pullmann (eds). Academic Press New York
-
Rich A (1962) On the problems of evolution and biochemical information transfer. In: Kasha M, Pullmann B (eds) Horizons in biochemistry. Academic Press, New York, pp 103-126
-
(1962)
Horizons in Biochemistry
, pp. 103-126
-
-
Rich, A.1
-
32
-
-
0348136386
-
Generalized RNA-directed recombination of RNA
-
DOI 10.1016/j.chembiol.2003.11.015
-
CA Riley N Lehman 2003 Generalized RNA-directed recombination of RNA Chem Biol 10 1233 1243 10.1016/j.chembiol.2003.11.015 1:CAS:528:DC%2BD3sXhtVWis73M 14700631 (Pubitemid 38042727)
-
(2003)
Chemistry and Biology
, vol.10
, Issue.12
, pp. 1233-1243
-
-
Riley, C.A.1
Lehman, N.2
-
33
-
-
23144436036
-
Assembly PCR oligo maker: A tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production
-
DOI 10.1093/nar/gki380
-
R Rydzanicz XS Zhao PE Johnson 2005 Assembly PCR oligo maker: a tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production Nucleic Acids Res 33 W521 W525 10.1093/nar/gki380 1:CAS:528:DC%2BD2MXlslyrtb0%3D 15980526 (Pubitemid 44529975)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Rydzanicz, R.1
Zhao, X.S.2
Johnson, P.E.3
-
34
-
-
0033485559
-
Non-unity molecular heritability demonstrated by continuous evolution in vitro
-
10.1016/S1074-5521(00)80005-8 1:CAS:528:DyaK1MXotVygsrw%3D 10631514
-
T Schmitt N Lehman 1999 Non-unity molecular heritability demonstrated by continuous evolution in vitro Chem Biol 6 857 869 10.1016/S1074-5521(00)80005-8 1:CAS:528:DyaK1MXotVygsrw%3D 10631514
-
(1999)
Chem Biol
, vol.6
, pp. 857-869
-
-
Schmitt, T.1
Lehman, N.2
-
35
-
-
0032549780
-
RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting
-
DOI 10.1126/science.279.5358.1940
-
B Sclavi M Sullivan MR Chance M Brenowitz SA Woodson 1998 RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting Science 279 1940 1943 10.1126/science.279.5358.1940 1:CAS:528:DyaK1cXhvFKnu7g%3D 9506944 (Pubitemid 28168649)
-
(1998)
Science
, vol.279
, Issue.5358
, pp. 1940-1943
-
-
Sclavi, B.1
Sullivan, M.2
Chance, M.R.3
Brenowitz, M.4
Woodson, S.A.5
-
36
-
-
33344468482
-
Frequency of RNA-RNA interaction in a model of the RNA World
-
DOI 10.1261/rna.2204506
-
JC Striggles MB Martin FJ Schmidt 2006 Frequency of RNA-RNA interaction in a model of the RNA World RNA 12 353 359 10.1261/rna.2204506 1:CAS:528:DC%2BD28Xit1Kmsb0%3D 16495233 (Pubitemid 43290864)
-
(2006)
RNA
, vol.12
, Issue.3
, pp. 353-359
-
-
Striggles, J.C.1
Martin, M.B.2
Schmidt, F.J.3
-
37
-
-
0001878781
-
In vitro selection of functional RNA sequences
-
R. Gesteland J. Atkins (eds). 1 Cold Spring Harbor Press New York
-
Szostak J, Ellington A (1993) In vitro selection of functional RNA sequences. In: Gesteland R, Atkins J (eds) The RNA world, 1st edn. Cold Spring Harbor Press, New York, pp 511-533
-
(1993)
The RNA World
, pp. 511-533
-
-
Szostak, J.1
Ellington, A.2
-
38
-
-
0035366896
-
Beyond kinetic traps in RNA folding
-
DOI 10.1016/S0959-440X(00)00206-2
-
DK Treiber JR Williamson 2001 Beyond kinetic traps in RNA folding Curr Opin Struct Biol 11 309 314 10.1016/S0959-440X(00)00206-2 1:CAS:528: DC%2BD3MXks1Gqs7k%3D 11406379 (Pubitemid 32568270)
-
(2001)
Current Opinion in Structural Biology
, vol.11
, Issue.3
, pp. 309-314
-
-
Treiber, D.K.1
Williamson, J.R.2
-
39
-
-
0029999325
-
Hypermutagenic PCR involving all four transitions and a sizeable proportion of transversions
-
DOI 10.1093/nar/24.14.2627
-
JP Vartanian M Henry S Wain-Hobson 1996 Hypermutagenic PCR involving all four transitions and a sizeable proportion of transversions Nucleic Acids Res 24 2627 2631 10.1093/nar/24.14.2627 1:CAS:528:DyaK28XkslWmurw%3D 8758987 (Pubitemid 26239725)
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.14
, pp. 2627-2631
-
-
Vartanian, J.-P.1
Henry, M.2
Wain-Hobson, S.3
-
40
-
-
34250860849
-
Selection of an improved RNA polymerase ribozyme with superior extension and fidelity
-
DOI 10.1261/rna.548807
-
HS Zaher PJ Unrau 2007 Selection of an improved RNA polymerase ribozyme with superior extension and fidelity RNA 13 1017 1026 10.1261/rna.548807 1:CAS:528:DC%2BD2sXnsFSqtb4%3D 17586759 (Pubitemid 46984892)
-
(2007)
RNA
, vol.13
, Issue.7
, pp. 1017-1026
-
-
Zaher, H.S.1
Unrau, P.J.2
-
41
-
-
0027991626
-
Kinetic intermediates in RNA folding
-
10.1126/science.8052848 1:CAS:528:DyaK2cXmslClsLk%3D 8052848
-
P Zarrinkar JR Williamson 1994 Kinetic intermediates in RNA folding Science 265 918 924 10.1126/science.8052848 1:CAS:528:DyaK2cXmslClsLk%3D 8052848
-
(1994)
Science
, vol.265
, pp. 918-924
-
-
Zarrinkar, P.1
Williamson, J.R.2
-
42
-
-
11144256451
-
Fast formation of the P3-P7 pseudoknot: A strategy for efficient folding of the catalytically active ribozyme
-
DOI 10.1261/rna.7145105
-
L Zhang M Xiao C Lu Y Zhang 2005 Fast formation of the P3-P7 pseudoknot: a strategy for efficient folding of the catalytically active ribozyme RNA 11 59 69 10.1261/rna.7145105 1:CAS:528:DC%2BD2MXhvFaktg%3D%3D 15574515 (Pubitemid 40041573)
-
(2005)
RNA
, vol.11
, Issue.1
, pp. 59-69
-
-
Zhang, L.1
Xiao, M.2
Lu, C.3
Zhang, Y.4
|