Detecting intramolecular dynamics and multiple förster resonance energy transfer states by fluorescence correlation spectroscopy

Journal of Physical Chemistry B

Volumn 114, Issue 17, 2010, Pages 5895-5902

  Price, E Shane ^a   Devore, Matthew S ^a   Johnson, Carey K ^a  

^a UNIVERSITY OF KANSAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM; CALMODULIN; ENERGY TRANSFER; FLUORESCENCE; FLUORESCENCE SPECTROSCOPY; PHOTOBLEACHING; REGRESSION ANALYSIS; TIME MEASUREMENT;

AUTOCORRELATION FUNCTIONS; CONTROL MEASUREMENTS; CROSS-CORRELATION FUNCTION; DYNAMIC PROCESS; FLUORESCENCE CORRELATION SPECTROSCOPY; GLOBAL FITTING; HYDRODYNAMIC RADIUS; INTRAMOLECULAR DYNAMICS; POLYPROLINE; RESONANCE ENERGY TRANSFER; ROBUST METHODS; SHAPE EFFECT; SIGNALING PROTEINS; TIME-SCALES; TRANSLATIONAL DIFFUSION;

DYNAMICS;

EID: 77951774238     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp912125z     Document Type: Article

References (68)

1. Elson, E. L.; Magde, D. Biopolymers 1974, 13, 1
2. Magde, D.; Elson, E. L.; Webb, W. W. Biopolymers 1974, 13, 29
3. Rigler, R.; Widengren, J. Bioscience 1990, 3, 180
4. Rigler, R.; Elson, E. S. Fluorescence Correlation Spectroscopy: Theory and Applications; Springer-Verlag: Berlin, 2001.
5. Hess, S. T.; Huang, S.; Heikal, A. A.; Webb, W. W. Biochemistry 2002, 41, 697
6. Eggeling, C.; Jager, S.; Winkler, D.; Kask, P. Curr. Pharm. Biotechnol. 2005, 6, 351
7. Haustein, E.; Schwille, P. Annu. Rev. Biophys. Biomol. Struct. 2007, 36, 151
8. Widengren, J.; Dapprich, J.; Rigler, R. Chem. Phys. 1997, 216, 417
9. Haupts, U.; Maiti, S.; Schwille, P.; Webb, W. W. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 13573
10. Lamb, D. C.; Schenk, A.; Rocker, C.; Scalfi-Happ, C.; Nienhaus, G. U. Biophys. J. 2000, 79, 1129
11. Hom, E. F. Y.; Verkman, A. S. Biophys. J. 2002, 83, 533
12. Bonnet, G.; Krichevsky, O.; Libchaber, A. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 8602
13. Chattopadhyay, K.; Saffarian, S.; Elson, E. L.; Frieden, C. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 14171
14. Margittai, M.; Widengren, J.; Schweinberger, E.; Schroder, G. F.; Felekyan, S.; Haustein, E.; Konig, M.; Fasshauer, D.; Grubmuller, H.; Jahn, R.; Seidel, C. A. M. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 15516
15. Koltermann, A.; Kettling, U.; Bieschke, J.; Winkler, T.; Eigen, M. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 1421
16. Matayoshi, E.; Swift, K. Springer Ser. Chem. Phys. 2001, 65, 84
17. Kohl, T.; Heinze, K. G.; Kuhlemann, R.; Koltermann, A.; Schwille, P. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 12161
18. Kim, S. A.; Heinze, K. G.; Bacia, K.; Waxham, M. N.; Schwille, P. Biophys. J. 2005, 88, 4319
19. Schwille, P.; Haupts, U.; Maiti, S.; Webb, W. W. Biophys. J. 1999, 77, 2251
20. Slaughter, B. D.; Allen, M. W.; Unruh, J. R.; Urbauer, R. J. B.; Johnson, C. K. J. Phys. Chem. B 2004, 108, 10388
21. Laurence, T. A.; Kapanidis, A. N.; Kong, X.; Chemla, D. S.; Weiss, S. J. Phys. Chem. B 2004, 108, 3051
22. Eggeling, C.; Kask, P.; Winkler, D.; Jaeger, S. Biophys. J. 2005, 89, 605
23. Müller, B. K.; Zaychikov, E.; Brauchle, C.; Lamb, D. C. Biophys. J. 2005, 89, 3508
24. Ruetinger, S.; Macdonald, R.; Kramer, B.; Koberling, F.; Roos, M.; Hildt, E. J. Biomed. Opt. 2006, 11, 024012/1
25. Torres, T.; Levitus, M. J. Phys. Chem. B 2007, 111, 7392
26. Nettels, D.; Hoffmann, A.; Schuler, B. J. Phys. Chem. B 2008, 112, 6137
27. Schuler, B.; Lipman, E. A.; Eaton, W. A. Nature 2002, 419, 743
28. Schuler, B.; Lipman, E. A.; Steinbach, P. J.; Kumke, M.; Eaton, W. A. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 2754
29. Watkins, L. P.; Chang, H. Y.; Yang, H. J. Phys. Chem. A 2006, 110, 5191
30. Best, R. B.; Merchant, K. A.; Gopich, I. V.; Schuler, B.; Bax, A.; Eaton, W. A. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 18964
31. Slaughter, B. D.; Allen, M. W.; Unruh, J. R.; Urbauer, R. J. B.; Johnson, C. K. J. Phys. Chem. B 2004, 108, 10388
32. Allen, M. W.; Bieber Urbauer, R. J.; Johnson, C. K. Anal. Chem. 2004, 76, 3630
33. Allen, M. W.; Urbauer, R. J. B.; Zaidi, A.; Williams, T. D.; Urbauer, J. L.; Johnson, C. K. Anal. Biochem. 2004, 325, 273
34. Eid, J. S.; Muller, J. D.; Gratton, E. Rev. Sci. Instrum. 2000, 71, 361
35. Magatti, D.; Ferri, F. Rev. Sci. Instrum. 2003, 74, 1135
36. Wahl, M.; Gregor, I.; Patting, M.; Enderlein, J. Opt. Express 2003, 11, 3583
37. Felekyan, S.; Kuehnemuth, R.; Kudryavtsev, V.; Sandhagen, C.; Becker, W.; Seidel, C. A. M. Rev. Sci. Instrum. 2005, 76, 083104/1
38. Zhao, M.; Jin, L.; Chen, B.; Ding, Y.; Ma, H.; Chen, D. Y. Appl. Opt. 2003, 42, 4031
39. Widengren, J.; Mets, U.; Rigler, R. J. Phys. Chem. 1995, 99, 13368
40. Wohland, T.; Rigler, R.; Vogel, H. Biophys. J. 2001, 80, 2987
41. Price, E. S. Single-Molecule Spectroscopic Tools for Measuring Microsecond and Millisecond Dynamics of Calmodulin; University of Kansas: Lawrence, KS, 2009.
42. Eid, J. S. Two-Photon Dual Channel Fluctuation Correlation Spectroscopy: Theory and Application. Ph.D. Thesis; University of Illinois: Urbana, IL, 2002.
43. Magde, D.; Elson, E.; Webb, W. W. Phys. Rev. Lett. 1972, 29, 705
44. Berne, B. J.; Pecora, R. Dynamic Light Scattering; Wiley: New York, 1976.
45. Palmer, A. G., 3rd; Thompson, N. L. Biophys. J. 1987, 51, 339
46. Widengren, J.; Mets, Ü. Conceptual Basis of Fluorescence Correlation Spectroscopy and Related Techniques as Tools in Bioscience. In Single Molecule Detection in Solution; Zander, C.; Enderlein, J.; Keller, R. A., Eds.; Wiley-VCH: Berlin, 2002; p 69.
47. Slaughter, B. D.; Unruh, J. R.; Allen, M. W.; Urbauer, R. J. B.; Johnson, C. K. Biochemistry 2005, 44, 3694
48. Földes-Papp, Z. Exp. Mol. Path. 2007, 82, 147
49. Means, A. R. Handb. Cell Signaling 2004, 2, 83
50. Yamniuk, A. P.; Vogel, H. J. Mol. Biotechnol. 2004, 27, 33
51. Berggrd, T.; Arrigoni, G.; Olsson, O.; Fex, M.; Linse, S.; James, P. J. Proteome Res. 2006, 5, 669
52. Eisenmesser, E. Z.; Bosco, D. A.; Akke, M.; Kern, D. Science 2002, 295, 1520
53. Gsponer, J.; Christodoulou, J.; Cavalli, A.; Bui, J. M.; Richter, B.; Dobson, C. M.; Vendruscolo, M. Structure 2008, 16, 736
54. Frauenfelder, H.; Sligar, S. G.; Wolynes, P. G. Science 1991, 254, 1598
55. Englander, S. W.; Kallenbach, N. R. Q. Rev. Biophys. 1983, 16, 521
56. Wand, A. J. Nat. Struct. Biol. 2001, 8, 926
57. Palmer, A. G., III Chem. Rev. 2004, 104, 3623
58. Miyawaki, A.; Llopis, J.; Heim, R.; McCaffery, J. M.; Adams, J. A.; Ikura, M.; Tsien, R. Y. Nature 1997, 388, 882
59. Margittai, M.; Widengren, J.; Schweinberger, E.; Schroder, G. F.; Felekyan, S.; Haustein, E.; Konig, M.; Fasshauer, D.; Grubmuller, H.; Jahn, R.; Seidel, C. A. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 15516
60. Gurunathan, K.; Levitus, M. J. Phys. Chem. B 2009, 114, 980
61. Slaughter, B. D.; Bieber-Urbauer, R. J.; Johnson, C. K. J. Phys. Chem. B 2005, 109, 12658
62. Martin, S. R.; Andersson Teleman, A.; Bayley, P. M.; Drakenberg, T.; Forsen, S. Eur. J. Biochem. 1985, 151, 543
63. Malmendal, A.; Evenas, J.; Forsen, S.; Akke, M. J. Mol. Biol. 1999, 293, 883
64. Tjandra, N.; Kuboniwa, H.; Ren, H.; Bax, A. Eur. J. Biochem. 1995, 230, 1014
65. Park, H. Y.; Kim, S. A.; Korlach, J.; Rhoades, E.; Kwok, L. W.; Zipfel, W. R.; Waxham, M. N.; Webb, W. W.; Pollack, L. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 542
66. Tripathi, S.; Portman, J. J. J. Chem. Phys. 2008, 128, 205104
67. Tripathi, S.; Portman, J. J. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 2104
68. Yang, C.; Jas, G. S.; Kuczera, K. J. Biomol. Struct. Dyn. 2001, 19, 247