-
1
-
-
58149191270
-
The Universal protein resource (UniProt) 2009
-
Bairoch A., Bougueleret L., Altairac S., Amendolia V., ... & Zhang J. 2009. The Universal protein resource (UniProt) 2009. Nucleic Acids Res. 37(Database issue): D169-D174.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.Database issue
-
-
Bairoch, A.1
Bougueleret, L.2
Altairac, S.3
Amendolia, V.4
Zhang, J.5
-
2
-
-
33644957243
-
Identification and characterization of a novel intracellular alkaline α-amylase from the hyperthermophilic bacterium Thermotoga maritima MSB8
-
Ballschmiter M., Fütterer O. & Liebl W. 2006. Identification and characterization of a novel intracellular alkaline α-amylase from the hyperthermophilic bacterium Thermotoga maritima MSB8. Appl. Environ. Microbiol. 72: 2206-2211.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 2206-2211
-
-
Ballschmiter, M.1
Fütterer, O.2
Liebl, W.3
-
3
-
-
33748037939
-
Amylases, α and β
-
Bernfeld P. 1955. Amylases, α and β. Methods Enzymol. 1: 149-158.
-
(1955)
Methods Enzymol
, vol.1
, pp. 149-158
-
-
Bernfeld, P.1
-
4
-
-
0036525719
-
Starch-hydrolyzing enzymes from thermophilic archaea and bacteria
-
Bertoldo C. & Antranikian G. 2002. Starch-hydrolyzing enzymes from thermophilic archaea and bacteria. Curr. Opin. Chem. Biol. 6: 151-160.
-
(2002)
Curr. Opin. Chem. Biol.
, vol.6
, pp. 151-160
-
-
Bertoldo, C.1
Antranikian, G.2
-
5
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): An expert resource for glycogenomics
-
Cantarel B. L., Coutinho P. M., Rancurel C., Bernard T., Lombard V. & Henrissat B. 2009. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res. 37(Database Issue): D233-D238.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.Database Issue
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
Henrissat, B.6
-
6
-
-
1642458395
-
Horizontal gene transfer from Eukarya to Bacteria and domain shuffling: The α-amylase model
-
Da Lage J. L., Feller G. & Janecek S. 2004. Horizontal gene transfer from Eukarya to Bacteria and domain shuffling: the α-amylase model. Cell. Mol. Life Sci. 61: 97-109.
-
(2004)
Cell. Mol. Life Sci.
, vol.61
, pp. 97-109
-
-
da Lage, J.L.1
Feller, G.2
Janecek, S.3
-
7
-
-
0345736276
-
Engineering the thermostability of Bacillus licheniformis α-amylase
-
Declerck N., Machius M., Joyet P., Wiegand G., Huber R. & Gaillardin C. 2002. Engineering the thermostability of Bacillus licheniformis α-amylase. Biologia 57(Suppl. 11): 203-211.
-
(2002)
Biologia
, vol.57
, Issue.SUPPL. 11
, pp. 203-211
-
-
Declerck, N.1
Machius, M.2
Joyet, P.3
Wiegand, G.4
Huber, R.5
Gaillardin, C.6
-
9
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
10
-
-
33747366715
-
α-Amylase from Thermococcus hydrothermalis: Re-cloning aimed at the improved expression and hydrolysis of corn starch
-
Horvathova V., Godany A., Sturdik E. & Janecek S. 2006. α-Amylase from Thermococcus hydrothermalis: re-cloning aimed at the improved expression and hydrolysis of corn starch. Enzyme Microb. Technol. 39: 1300-1305.
-
(2006)
Enzyme Microb. Technol.
, vol.39
, pp. 1300-1305
-
-
Horvathova, V.1
Godany, A.2
Sturdik, E.3
Janecek, S.4
-
11
-
-
0038143285
-
Crystal structures of 4-α-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor
-
Imamura H., Fushinobu S., Yamamoto M., Kumasaka T., Jeon B. S., Wakagi T. & Matsuzawa H. 2003. Crystal structures of 4-α-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor. J. Biol. Chem. 278: 19378-19386.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 19378-19386
-
-
Imamura, H.1
Fushinobu, S.2
Yamamoto, M.3
Kumasaka, T.4
Jeon, B.S.5
Wakagi, T.6
Matsuzawa, H.7
-
12
-
-
0028021627
-
Sequence similarities and evolutionary relationships of microbial, plant and animal α-amylases
-
Janecek S. 1994. Sequence similarities and evolutionary relationships of microbial, plant and animal α-amylases. Eur. J. Biochem. 224: 519-524.
-
(1994)
Eur. J. Biochem.
, vol.224
, pp. 519-524
-
-
Janecek, S.1
-
13
-
-
0012286188
-
How many conserved sequence regions are there in the α-amylase family?
-
Janecek S. 2002. How many conserved sequence regions are there in the α-amylase family? Biologia 57(Suppl. 11): 29-41.
-
(2002)
Biologia
, vol.57
, Issue.SUPPL. 11
, pp. 29-41
-
-
Janecek, S.1
-
14
-
-
33748670795
-
Amylolytic families of glycoside hydrolases: Focus on the family GH-57
-
Janecek S. 2005. Amylolytic families of glycoside hydrolases: focus on the family GH-57. Biologia 60(Suppl. 16): 177-184.
-
(2005)
Biologia
, vol.60
, Issue.SUPPL. 16
, pp. 177-184
-
-
Janecek, S.1
-
15
-
-
77951738053
-
Sequence fingerprints in the evolution of the α-amylase family
-
Cambridge: Woodhead Publishing, Ltd., K. H. Park (Ed.)
-
Janecek S. 2008. Sequence fingerprints in the evolution of the α-amylase family, pp. 45-63. In: Park K. H. (Ed.) Carbohydrate-Active Enzymes: Structure, Function and Applications. Woodhead Publishing, Ltd., Cambridge.
-
(2008)
Carbohydrate-Active Enzymes: Structure, Function and Applications
, pp. 45-63
-
-
Janecek, S.1
-
16
-
-
0033025132
-
Close evolutionary relatedness of α-amylases from Archaea and plants
-
Janecek S., Leveque E., Belarbi A. & Haye B. 1999. Close evolutionary relatedness of α-amylases from Archaea and plants. J. Mol. Evol. 48: 421-426.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 421-426
-
-
Janecek, S.1
Leveque, E.2
Belarbi, A.3
Haye, B.4
-
17
-
-
0032960271
-
Amylase and 16S rRNA genes from a hyperthermophilic archaebacterium
-
Jones R. A., Jermiin L. S., Easteal S., Patel B. K. & Beacham I. R. 1999. Amylase and 16S rRNA genes from a hyperthermophilic archaebacterium. J. Appl. Microbiol. 86: 93-107.
-
(1999)
J. Appl. Microbiol.
, vol.86
, pp. 93-107
-
-
Jones, R.A.1
Jermiin, L.S.2
Easteal, S.3
Patel, B.K.4
Beacham, I.R.5
-
18
-
-
0028229326
-
Crystal and molecular structure of barley α-amylase
-
Kadziola A., Abe J., Svensson B. & Haser R. 1994. Crystal and molecular structure of barley α-amylase. J. Mol. Biol. 239: 104-121.
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 104-121
-
-
Kadziola, A.1
Abe, J.2
Svensson, B.3
Haser, R.4
-
19
-
-
2542510221
-
Cloning and expression of an α-amylase encoding gene from the hyperthermophilic archaebacterium Thermococcus hydrothermalis and biochemical characterisation of the recombinant enzyme
-
Leveque E., Haye B. & Belarbi A. 2000a. Cloning and expression of an α-amylase encoding gene from the hyperthermophilic archaebacterium Thermococcus hydrothermalis and biochemical characterisation of the recombinant enzyme. FEMS Microbiol. Lett. 186: 67-71.
-
(2000)
FEMS Microbiol. Lett.
, vol.186
, pp. 67-71
-
-
Leveque, E.1
Haye, B.2
Belarbi, A.3
-
21
-
-
0031028407
-
Properties and gene structure of the Thermotoga maritima α-amylase AmyA, a putative lipoprotein of a hyperthermophilic bacterium
-
Liebl W., Stemplinger I. & Ruile P. 1997. Properties and gene structure of the Thermotoga maritima α-amylase AmyA, a putative lipoprotein of a hyperthermophilic bacterium. J. Bacteriol. 179: 941-948.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 941-948
-
-
Liebl, W.1
Stemplinger, I.2
Ruile, P.3
-
22
-
-
34548472445
-
Critical factors to high thermostability of an α-amylase from hyperthermophilic archaeon Thermococcus onnurineus NA1
-
Lim J. K., Lee H. S., Kim Y. J., Bae S. S., Jeon J. H., Kang S. G. & Lee J. H. 2007. Critical factors to high thermostability of an α-amylase from hyperthermophilic archaeon Thermococcus onnurineus NA1. J. Microbiol. Biotechnol. 17: 1242-1248.
-
(2007)
J. Microbiol. Biotechnol.
, vol.17
, pp. 1242-1248
-
-
Lim, J.K.1
Lee, H.S.2
Kim, Y.J.3
Bae, S.S.4
Jeon, J.H.5
Kang, S.G.6
Lee, J.H.7
-
23
-
-
0037984394
-
Differential regulation of a hyperthermophilic α-amylase with a novel (Ca, Zn) two-metal center by zinc
-
Linden A., Mayans O., Meyer-Klaucke W., Antranikian G. & Wilmanns M. 2003. Differential regulation of a hyperthermophilic α-amylase with a novel (Ca, Zn) two-metal center by zinc. J. Biol. Chem. 278: 9875-9884.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 9875-9884
-
-
Linden, A.1
Mayans, O.2
Meyer-Klaucke, W.3
Antranikian, G.4
Wilmanns, M.5
-
25
-
-
33745853308
-
An overview of clan GH-H and distantly related families
-
MacGregor E. A. 2005. An overview of clan GH-H and distantly related families. Biologia 60(Suppl. 16): 5-12.
-
(2005)
Biologia
, vol.60
, Issue.SUPPL. 16
, pp. 5-12
-
-
MacGregor, E.A.1
-
26
-
-
0035831255
-
Relationship of sequence and structure to specificity in the α-amylase family of enzymes
-
MacGregor E. A., Janecek S. & Svensson B. 2001. Relationship of sequence and structure to specificity in the α-amylase family of enzymes. Biochim. Biophys. Acta 1546: 1-20.
-
(2001)
Biochim. Biophys. Acta
, vol.1546
, pp. 1-20
-
-
MacGregor, E.A.1
Janecek, S.2
Svensson, B.3
-
27
-
-
0021395910
-
Structure and possible catalytic residues of Taka-amylase A
-
Matsuura Y., Kusunoki M., Harada W. & Kakudo M. 1984. Structure and possible catalytic residues of Taka-amylase A. J. Biochem. 95: 697-702.
-
(1984)
J. Biochem.
, vol.95
, pp. 697-702
-
-
Matsuura, Y.1
Kusunoki, M.2
Harada, W.3
Kakudo, M.4
-
29
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
-
Nelson K. E., Clayton R. A., Gill S. R., Gwinn M. L., ... & Fraser C. M. 1999. Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima. Nature 399: 323-329.
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Fraser, C.M.5
-
30
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page R. D. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12: 357-358.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 357-358
-
-
Page, R.D.1
-
31
-
-
0041663295
-
The structure of barley α-amylase isozyme 1 reveals a novel role of domain C in substrate recognition and binding: A pair of sugar tongs
-
Robert X., Haser R., Gottschalk T. E, Ratajczak F., Driguez H., Svensson B. & Aghajari N. 2003. The structure of barley α-amylase isozyme 1 reveals a novel role of domain C in substrate recognition and binding: a pair of sugar tongs. Structure 11: 973-984.
-
(2003)
Structure
, vol.11
, pp. 973-984
-
-
Robert, X.1
Haser, R.2
Gottschalk, T.E.3
Ratajczak, F.4
Driguez, H.5
Svensson, B.6
Aghajari, N.7
-
32
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N. & Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
33
-
-
0037076543
-
Pyrococcus furiosus α-amylase is stabilized by calcium and zinc
-
Savchenko A., Vieille C., Kang S. & Zeikus J. G. 2002. Pyrococcus furiosus α-amylase is stabilized by calcium and zinc. Biochemistry 41: 6193-6201.
-
(2002)
Biochemistry
, vol.41
, pp. 6193-6201
-
-
Savchenko, A.1
Vieille, C.2
Kang, S.3
Zeikus, J.G.4
-
34
-
-
57349153333
-
An enzyme family reunion - similarities, differences and eccentricities in actions on α-glucans
-
Seo E. S., Christiansen C., Abou Hachem M., Nielsen M. M., Fukuda K., Bozonnet S., Blennow A., Aghajari N., Haser R. & Svensson B. 2008. An enzyme family reunion - similarities, differences and eccentricities in actions on α-glucans. Biologia 63: 967-979.
-
(2008)
Biologia
, vol.63
, pp. 967-979
-
-
Seo, E.S.1
Christiansen, C.2
Abou Hachem, M.3
Nielsen, M.M.4
Fukuda, K.5
Bozonnet, S.6
Blennow, A.7
Aghajari, N.8
Haser, R.9
Svensson, B.10
-
35
-
-
33646205656
-
Crystal structure of AmyA lacks acidic surface and provide insights into protein stability at poly-extreme condition
-
Sivakumar N., Li N., Tang J. W., Patel B. K. & Swaminathan K. 2006. Crystal structure of AmyA lacks acidic surface and provide insights into protein stability at poly-extreme condition. FEBS Lett. 580: 2646-2652.
-
(2006)
FEBS Lett
, vol.580
, pp. 2646-2652
-
-
Sivakumar, N.1
Li, N.2
Tang, J.W.3
Patel, B.K.4
Swaminathan, K.5
-
36
-
-
33745836733
-
α-Amylases from microbial sources - an overview on recent developments
-
Sivaramakrishnan S., Gangadharan D., Nampoothiri K. M., Soccol C. R. & Pandey A. 2006. α-Amylases from microbial sources - an overview on recent developments. Food Technol. Biotechnol. 44: 173-184.
-
(2006)
Food Technol. Biotechnol.
, vol.44
, pp. 173-184
-
-
Sivaramakrishnan, S.1
Gangadharan, D.2
Nampoothiri, K.M.3
Soccol, C.R.4
Pandey, A.5
-
37
-
-
41949118483
-
Crystal structure of the polyextremophilic α-amylase AmyB from Halothermothrix orenii: Details of a productive enzyme-substrate complex and an N domain with a role in binding raw starch
-
Tan T. C., Mijts B. N., Swaminathan K., Patel B. K. & Divne C. 2008. Crystal structure of the polyextremophilic α-amylase AmyB from Halothermothrix orenii: details of a productive enzyme-substrate complex and an N domain with a role in binding raw starch. J. Mol. Biol. 378: 852-870.
-
(2008)
J. Mol. Biol.
, vol.378
, pp. 852-870
-
-
Tan, T.C.1
Mijts, B.N.2
Swaminathan, K.3
Patel, B.K.4
Divne, C.5
-
38
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
-
Thompson J. D., Higgins D. G. & Gibson T. J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
39
-
-
0032964202
-
X-ray structures along the reaction pathway of cyclodextrin glycosyltransferase elucidate catalysis in the α-amylase family
-
Uitdehaag J. C., Mosi R., Kalk K. H., van der Veen B. A., Dijkhuizen L., Withers S. G. & Dijkstra B. W. 1999. X-ray structures along the reaction pathway of cyclodextrin glycosyltransferase elucidate catalysis in the α-amylase family. Nat. Struct. Biol. 6: 432-436.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 432-436
-
-
Uitdehaag, J.C.1
Mosi, R.2
Kalk, K.H.3
van der Veen, B.A.4
Dijkhuizen, L.5
Withers, S.G.6
Dijkstra, B.W.7
-
40
-
-
37449025531
-
Phylogenetic and biochemical characterization of a novel cluster of intracellular fungal α-amylase enzymes
-
van der Kaaij R. M., Janecek S., van der Maarel M. J. & Dijkhuizen L. 2007. Phylogenetic and biochemical characterization of a novel cluster of intracellular fungal α-amylase enzymes. Microbiology 153: 4003-4015.
-
(2007)
Microbiology
, vol.153
, pp. 4003-4015
-
-
van der Kaaij, R.M.1
Janecek, S.2
van der Maarel, M.J.3
Dijkhuizen, L.4
-
41
-
-
0035098779
-
Hyperthermophilic enzymes: Sources, uses and molecular mechanisms for thermostability
-
Vieille C. & Zeikus G. J. 2001. Hyperthermophilic enzymes: sources, uses and molecular mechanisms for thermostability. Microbiol. Mol. Biol. Rev. 65: 1-43.
-
(2001)
Microbiol. Mol. Biol. Rev.
, vol.65
, pp. 1-43
-
-
Vieille, C.1
Zeikus, G.J.2
-
42
-
-
3242816124
-
Bioinformatics of the family 57 glycoside hydrolases and identification of catalytic residues in amylopullulanase from Thermococcus hydrothermalis
-
Zona R., Chang-Pi-Hin F., O'Donohue M. J. & Janecek S. 2004. Bioinformatics of the family 57 glycoside hydrolases and identification of catalytic residues in amylopullulanase from Thermococcus hydrothermalis. Eur. J. Biochem. 271: 2863-2872.
-
(2004)
Eur. J. Biochem.
, vol.271
, pp. 2863-2872
-
-
Zona, R.1
Chang-Pi-Hin, F.2
O'Donohue, M.J.3
Janecek, S.4
|