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Volumn 99, Issue 6, 2010, Pages 2643-2654

Probing residue-specific interactions in the stabilization of proteins using high-resolution NMR: a study of disulfide bond compensation

Author keywords

Circular dichroism; Light scattering; Nmr spectroscopy; Oxidation; Physical stability; PRL 1; Protein aggregation; Protein structure

Indexed keywords

CYSTEINE; MUTANT PROTEIN;

EID: 77951518291     PISSN: 00223549     EISSN: 15206017     Source Type: Journal    
DOI: 10.1002/jps.22055     Document Type: Article
Times cited : (13)

References (52)
  • 1
    • 0031241608 scopus 로고    scopus 로고
    • Degradative covalent reactions important to protein stability
    • Volkin DB, Mach H, Middaugh CR. 1997. Degradative covalent reactions important to protein stability. Mol Biotechnol 8:105-122.
    • (1997) Mol Biotechnol , vol.8 , pp. 105-122
    • Volkin, D.B.1    Mach, H.2    Middaugh, C.R.3
  • 3
    • 1442356427 scopus 로고    scopus 로고
    • Role of disulfide bonds in the structure and activity of human insulin
    • Chang SG, Choi KD, Jang SH, Shin HC. 2003. Role of disulfide bonds in the structure and activity of human insulin. Mol Cells 16:323-330.
    • (2003) Mol Cells , vol.16 , pp. 323-330
    • Chang, S.G.1    Choi, K.D.2    Jang, S.H.3    Shin, H.C.4
  • 5
    • 0026210241 scopus 로고
    • Analysis and modulation of protein stability
    • Fontana A. 1991. Analysis and modulation of protein stability. Curr Opin Biotechnol 2:551-560.
    • (1991) Curr Opin Biotechnol , vol.2 , pp. 551-560
    • Fontana, A.1
  • 6
    • 37549067001 scopus 로고    scopus 로고
    • Stabilization of an immunoglobulin fold domain by an engineered disulfide bond at the buried hydrophobic region
    • Hagihara Y, Mine S, Uegaki K. 2007. Stabilization of an immunoglobulin fold domain by an engineered disulfide bond at the buried hydrophobic region. J Biol Chem 282:36489-36495.
    • (2007) J Biol Chem , vol.282 , pp. 36489-36495
    • Hagihara, Y.1    Mine, S.2    Uegaki, K.3
  • 7
    • 40049094697 scopus 로고    scopus 로고
    • Disulfide bond introduction for general stabilization of immunoglobulin heavy-chain variable domains
    • Saerens D, Conrath K, Govaert J, Muyldermans S. 2008. Disulfide bond introduction for general stabilization of immunoglobulin heavy-chain variable domains. JMol Biol 377:478-488.
    • (2008) JMol Biol , vol.377 , pp. 478-488
    • Saerens, D.1    Conrath, K.2    Govaert, J.3    Muyldermans, S.4
  • 9
    • 0027362677 scopus 로고
    • Disulfide bonds and the stability of globular proteins
    • Betz SF. 1993. Disulfide bonds and the stability of globular proteins. Protein Sci 2:1551-1558.
    • (1993) Protein Sci , vol.2 , pp. 1551-1558
    • Betz, S.F.1
  • 10
    • 0023783477 scopus 로고
    • Conformational stability and activity of ribonuclease t1 with zero, one, and two intact disulfide bonds
    • Pace CN, Grimsley GR, Thomson JA, Barnett BJ. 1988. Conformational stability and activity of ribonuclease t1 with zero, one, and two intact disulfide bonds. J Biol Chem 263:11820-11825.
    • (1988) J Biol Chem , vol.263 , pp. 11820-11825
    • Pace, C.N.1    Grimsley, G.R.2    Thomson, J.A.3    Barnett, B.J.4
  • 11
    • 0034634005 scopus 로고    scopus 로고
    • Striking stabilization of arc repressor by an engineered disulfide bond
    • Robinson CR, Sauer RT. 2000. Striking stabilization of arc repressor by an engineered disulfide bond. Biochemistry 39:12494-12502.
    • (2000) Biochemistry , vol.39 , pp. 12494-12502
    • Robinson, C.R.1    Sauer, R.T.2
  • 13
    • 14644442348 scopus 로고    scopus 로고
    • Disulfide bonds, their stereospecific environment and conservation in protein structures
    • Bhattacharyya R, Pal D, Chakrabarti P. 2004. Disulfide bonds, their stereospecific environment and conservation in protein structures. Protein Eng Des Sel 17:795-808.
    • (2004) Protein Eng des Sel , vol.17 , pp. 795-808
    • Bhattacharyya, R.1    Pal, D.2    Chakrabarti, P.3
  • 14
    • 0042665942 scopus 로고    scopus 로고
    • Disulfide bonds convert small heat shock protein hsp16.3 from chaperone to a nonchaperone: Implications for the evolution of cystein in molecular chaperones
    • Fu X, Li W, Mao Q, Chang Z. 2003. Disulfide bonds convert small heat shock protein hsp16.3 from chaperone to a nonchaperone: Implications for the evolution of cystein in molecular chaperones. Biochem Biophys Res Commun 308:627-635.
    • (2003) Biochem Biophys Res Commun , vol.308 , pp. 627-635
    • Fu, X.1    Li, W.2    Mao, Q.3    Chang, Z.4
  • 15
    • 0037397499 scopus 로고    scopus 로고
    • Disulfide bonds as switches for protein function
    • Hogg PJ. 2003. Disulfide bonds as switches for protein function. Trends Biochem Sci 28:210-214.
    • (2003) Trends Biochem Sci , vol.28 , pp. 210-214
    • Hogg, P.J.1
  • 16
    • 37649012488 scopus 로고    scopus 로고
    • Disulfide bond influence on the protein structural dynamics probed with 2D-IR vibrational echo spectroscopy
    • Ishikawa H, Kim S, Kwak K, Wakasugi K, Fayer MD. 2007. Disulfide bond influence on the protein structural dynamics probed with 2D-IR vibrational echo spectroscopy. Proc Natl Acad Sci USA 104:19309-19314.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 19309-19314
    • Ishikawa, H.1    Kim, S.2    Kwak, K.3    Wakasugi, K.4    Fayer, M.D.5
  • 17
    • 0035104132 scopus 로고    scopus 로고
    • Disulfide bond effects on protein stability: Designed variants of cucurbita maxima trypsin inhibitor-V
    • Zavodszky M, Chen C-W, Huang J-K, Zolkiewski M, Wen L, Krishnamoothi R. 2001. Disulfide bond effects on protein stability: Designed variants of cucurbita maxima trypsin inhibitor-V. Protein Sci 10:149-160.
    • (2001) Protein Sci , vol.10 , pp. 149-160
    • Zavodszky, M.1    Chen, C.-W.2    Huang, J.-K.3    Zolkiewski, M.4    Wen, L.5    Krishnamoothi, R.6
  • 19
    • 38149106504 scopus 로고    scopus 로고
    • Context-dependence of the contribution of disulfide bonds to β-hairpin stability
    • Santiveri CM, Leon E, Rico M, Jimenez MA. 2008. Context-dependence of the contribution of disulfide bonds to β-hairpin stability. Chemistry 14:488-499.
    • (2008) Chemistry , vol.14 , pp. 488-499
    • Santiveri, C.M.1    Leon, E.2    Rico, M.3    Jimenez, M.A.4
  • 20
    • 68249083699 scopus 로고    scopus 로고
    • Effects of disulfide bond formation and protein helicity on the aggregation of activating transcription factor 5
    • Ciaccio, NA, Laurence JS. 2009. Effects of disulfide bond formation and protein helicity on the aggregation of activating transcription factor 5. Mol Pharm 6:1205-1215.
    • (2009) Mol Pharm , vol.6 , pp. 1205-1215
    • Ciaccio, N.A.1    Laurence, J.S.2
  • 22
    • 42449118010 scopus 로고    scopus 로고
    • Immunoglobulin dynamics, conformational fluctuations, and nonlinear elasticity and their effects on stability
    • Kamerzell TJ, Ramsey JD, Middaugh CR. 2008. Immunoglobulin dynamics, conformational fluctuations, and nonlinear elasticity and their effects on stability. J Phys Chem B 112:3240-3250.
    • (2008) J Phys Chem B , vol.112 , pp. 3240-3250
    • Kamerzell, T.J.1    Ramsey, J.D.2    Middaugh, C.R.3
  • 24
    • 27644469867 scopus 로고    scopus 로고
    • Solution behavior of ifn-β-1a: An empirical phase diagram based approach
    • Fan HF, Ralston J, Dibiase M, Faulkner E, Middaugh CR. 2005. Solution behavior of ifn-β-1a: An empirical phase diagram based approach. J Pharm Sci 94:1893-1911.
    • (2005) J Pharm Sci , vol.94 , pp. 1893-1911
    • Fan, H.F.1    Ralston, J.2    Dibiase, M.3    Faulkner, E.4    Middaugh, C.R.5
  • 25
    • 0032491317 scopus 로고    scopus 로고
    • α to β transition of β-lactogobulin as evidenced by heteronuclear NMR
    • Kuwata K, Hoshino M, Era S, Batt CA, Goto Y. 1998. α to β transition of β-lactogobulin as evidenced by heteronuclear NMR. J Mol Biol 283:731-739.
    • (1998) J Mol Biol , vol.283 , pp. 731-739
    • Kuwata, K.1    Hoshino, M.2    Era, S.3    Batt, C.A.4    Goto, Y.5
  • 27
    • 67349093283 scopus 로고    scopus 로고
    • Structural dynamics and folding of β-lactoglobulin probed by heteronuclear NMR
    • Sakurai K, Konuma T, Yagi M, Goto Y. 2009. Structural dynamics and folding of β-lactoglobulin probed by heteronuclear NMR. Biochim Biophys Acta 1790:527-537.
    • (2009) Biochim Biophys Acta , vol.1790 , pp. 527-537
    • Sakurai, K.1    Konuma, T.2    Yagi, M.3    Goto, Y.4
  • 28
    • 33845480287 scopus 로고    scopus 로고
    • Protein tyrosine phosphorylation and reversible oxidation: Two cross-talking posttranslation modifications
    • Chiarugi P, Buricchi F. 2007. Protein tyrosine phosphorylation and reversible oxidation: Two cross-talking posttranslation modifications. Antiox Redox Signal 9:1-24.
    • (2007) Antiox Redox Signal , vol.9 , pp. 1-24
    • Chiarugi, P.1    Buricchi, F.2
  • 29
    • 24644519820 scopus 로고    scopus 로고
    • Structure and biochemical properties of PRL-1, a phosphatase implicated in cell growth, differentiation, and tumor invasion
    • Sun J-P, Wang W-Q, Yang H, Liu S, Liang F, Fedorov AA, Almo SC, Zhang Z-Y. 2005. Structure and biochemical properties of PRL-1, a phosphatase implicated in cell growth, differentiation, and tumor invasion. Biochemistry 44:12009-12021.
    • (2005) Biochemistry , vol.44 , pp. 12009-12021
    • Sun, J.-P.1    Wang, W.-Q.2    Yang, H.3    Liu, S.4    Liang, F.5    Fedorov, A.A.6    Almo, S.C.7    Zhang, Z.-Y.8
  • 31
    • 65649093695 scopus 로고    scopus 로고
    • 13C resonance assignments of the reduced and active form of human protein tyrosine phosphatase, PRL-1
    • 13C resonance assignments of the reduced and active form of human protein tyrosine phosphatase, PRL-1. Biomol NMR Assign 3:61-65.
    • (2009) Biomol NMR Assign , vol.3 , pp. 61-65
    • Skinner, A.1    Laurence, J.S.2
  • 32
    • 66149160477 scopus 로고    scopus 로고
    • Enzyme activity of phosphatase of regenerating liver is controlled by the redox environment and its C-terminal residues
    • Skinner AL, Vartia AA, Williams TD, Laurence JS. 2009. Enzyme activity of phosphatase of regenerating liver is controlled by the redox environment and its C-terminal residues. Biochemistry 48:4262-4272.
    • (2009) Biochemistry , vol.48 , pp. 4262-4272
    • Skinner, A.L.1    Vartia, A.A.2    Williams, T.D.3    Laurence, J.S.4
  • 33
    • 9644295701 scopus 로고    scopus 로고
    • Trimeric structure of PRL-1 phosphatase reveals an active enzyme conformation and regulation mechanisms
    • Jeong DG, Kim SJ, Kim JH, Son JH, Park MR, Lim SM, Yoon T-S, Ryu SE. 2005. Trimeric structure of PRL-1 phosphatase reveals an active enzyme conformation and regulation mechanisms. J Mol Biol 345:401-413.
    • (2005) J Mol Biol , vol.345 , pp. 401-413
    • Jeong, D.G.1    Kim, S.J.2    Kim, J.H.3    Son, J.H.4    Park, M.R.5    Lim, S.M.6    Yoon, T.-S.7    Ryu, S.E.8
  • 35
    • 43349086300 scopus 로고    scopus 로고
    • The interference of HEPES buffer during amperometric detection of atp in clinical applications
    • Masson JF, Gauda E, Mizaikoff B, Kranz C. 2008. The interference of HEPES buffer during amperometric detection of atp in clinical applications. Anal Bioanal Chem 390:2067-2071.
    • (2008) Anal Bioanal Chem , vol.390 , pp. 2067-2071
    • Masson, J.F.1    Gauda, E.2    Mizaikoff, B.3    Kranz, C.4
  • 37
    • 0024448151 scopus 로고
    • Calculation of protein extinction coefficients from amino acid sequence data
    • Gill SC, von Hippel PH. 1989. Calculation of protein extinction coefficients from amino acid sequence data. Anal Biochem 182:319-326.
    • (1989) Anal Biochem , vol.182 , pp. 319-326
    • Gill, S.C.1    Von Hippel, P.H.2
  • 39
    • 0004757060 scopus 로고    scopus 로고
    • San Francisco: University of California
    • Goddard TD, Kneller DG. 2004. Sparky. San Francisco: University of California.
    • (2004) Sparky
    • Goddard, T.D.1    Kneller, D.G.2
  • 40
    • 2242428044 scopus 로고    scopus 로고
    • Calcium iduced conformational switching of paramecium calmodulin provides evidence for domain coupling
    • Jaren OR, Kranz JK, Sorensen BR, Wand J, Shea MA. 2002. Calcium iduced conformational switching of paramecium calmodulin provides evidence for domain coupling. Biochemistry 41:14158-14166.
    • (2002) Biochemistry , vol.41 , pp. 14158-14166
    • Jaren, O.R.1    Kranz, J.K.2    Sorensen, B.R.3    Wand, J.4    Shea, M.A.5
  • 41
    • 24344440618 scopus 로고    scopus 로고
    • Probabilistic identification of spin systems and their assignments including coil-helix interference as output (pistachio)
    • Eghbalnia HR, Bahrami A, Wang L, Assadi A, Markley JL. 2005. Probabilistic identification of spin systems and their assignments including coil-helix interference as output (pistachio). J Biomol NMR 32:219-233.
    • (2005) J Biomol NMR , vol.32 , pp. 219-233
    • Eghbalnia, H.R.1    Bahrami, A.2    Wang, L.3    Assadi, A.4    Markley, J.L.5
  • 43
    • 0038679481 scopus 로고    scopus 로고
    • Chemical and mechanistic approaches to the study of protein tyrosine phosphatases
    • Zhang Z-Y. 2003. Chemical and mechanistic approaches to the study of protein tyrosine phosphatases. Acc Chem Res 36:385-392.
    • (2003) Acc Chem Res , vol.36 , pp. 385-392
    • Zhang, Z.-Y.1
  • 46
    • 35348995405 scopus 로고    scopus 로고
    • Phosphatase activity, trimerization, and the C-terminal polybasic region are all required for PRL1-mediated cell growth and migration
    • Sun J-P, Luo Y, Yu X, Wang W-Q, Zhou B, Liang F, Zhang Z-Y. 2007. Phosphatase activity, trimerization, and the C-terminal polybasic region are all required for PRL1-mediated cell growth and migration. J Biol Chem 282:29043-29051.
    • (2007) J Biol Chem , vol.282 , pp. 29043-29051
    • Sun, J.-P.1    Luo, Y.2    Yu, X.3    Wang, W.-Q.4    Zhou, B.5    Liang, F.6    Zhang, Z.-Y.7
  • 47
    • 0037022563 scopus 로고    scopus 로고
    • Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation
    • Richardson JS, Richardson DC. 2002. Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation. Proc Natl Acad Sci USA 99:2754-2759.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 2754-2759
    • Richardson, J.S.1    Richardson, D.C.2
  • 50
    • 33748106496 scopus 로고    scopus 로고
    • Hydrogen bonding markedly reduces the pk of buried carboxyl groups in proteins
    • Thurlkill RL, Grimsley GR, Scholtz JM, Pace CN. 2006. Hydrogen bonding markedly reduces the pk of buried carboxyl groups in proteins. J Mol Biol 362:594-604.
    • (2006) J Mol Biol , vol.362 , pp. 594-604
    • Thurlkill, R.L.1    Grimsley, G.R.2    Scholtz, J.M.3    Pace, C.N.4
  • 51
    • 0026584344 scopus 로고
    • Contribution of hydrogen bonding to the conformational stability of ribonuclease t1
    • Shirley BA, Stanssens P, Hahn U, Pace CN. 1992. Contribution of hydrogen bonding to the conformational stability of ribonuclease t1. Biochemistry 31:725-732.
    • (1992) Biochemistry , vol.31 , pp. 725-732
    • Shirley, B.A.1    Stanssens, P.2    Hahn, U.3    Pace, C.N.4


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