-
1
-
-
0038383625
-
Agrobiodiversity with emphasis on plant genetic resources
-
Hammer K., Arrowsmith N., and Gladis T. Agrobiodiversity with emphasis on plant genetic resources. Naturwissenschaften 90 (2003) 241-250
-
(2003)
Naturwissenschaften
, vol.90
, pp. 241-250
-
-
Hammer, K.1
Arrowsmith, N.2
Gladis, T.3
-
2
-
-
33646564415
-
Development of a composite collection for mining germplasm possessing allelic variation for beneficial traits in chickpea
-
Upadhyaya H.D., Furman B.J., Dwivedi S.L., Udupa S.M., Gowda C.L.L., Baum M., Crouch J.H., Buhariwalla H.K., and Singh S. Development of a composite collection for mining germplasm possessing allelic variation for beneficial traits in chickpea. Plant Genet Resour 4 (2006) 13-19
-
(2006)
Plant Genet Resour
, vol.4
, pp. 13-19
-
-
Upadhyaya, H.D.1
Furman, B.J.2
Dwivedi, S.L.3
Udupa, S.M.4
Gowda, C.L.L.5
Baum, M.6
Crouch, J.H.7
Buhariwalla, H.K.8
Singh, S.9
-
3
-
-
85010518294
-
Land ahead: using genome scans to identify molecular markers of adaptive relevance
-
Holderegger R., Herrmann D., Poncet B., Gugerli F., Thuiller W., Taberlet P., Gielly L., Rioux D., Brodbeck S., Aubert S., and Manel S. Land ahead: using genome scans to identify molecular markers of adaptive relevance. Plant Ecol Divers 1 (2008) 273-283
-
(2008)
Plant Ecol Divers
, vol.1
, pp. 273-283
-
-
Holderegger, R.1
Herrmann, D.2
Poncet, B.3
Gugerli, F.4
Thuiller, W.5
Taberlet, P.6
Gielly, L.7
Rioux, D.8
Brodbeck, S.9
Aubert, S.10
Manel, S.11
-
4
-
-
57549094170
-
Phylogeography: retrospect and prospect
-
Avise J.C. Phylogeography: retrospect and prospect. J Biogeogr 36 (2009) 3-15
-
(2009)
J Biogeogr
, vol.36
, pp. 3-15
-
-
Avise, J.C.1
-
5
-
-
34547108086
-
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
-
Clark R.M., Schweikert G., Toomajian C., Ossowski S., Zeller G., Shinn P., Warthmann N., Hu T.T., Fu G., Hinds D.A., et al. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science 317 (2007) 338-342
-
(2007)
Science
, vol.317
, pp. 338-342
-
-
Clark, R.M.1
Schweikert, G.2
Toomajian, C.3
Ossowski, S.4
Zeller, G.5
Shinn, P.6
Warthmann, N.7
Hu, T.T.8
Fu, G.9
Hinds, D.A.10
-
6
-
-
34548016343
-
Recombination and linkage disequilibrium in Arabidopsis thaliana
-
Kim S., Plagnol V., Hu T.T., Toomajian C., Clark R.M., Ossowski S., Ecker J.R., Weigel D., and Nordborg M. Recombination and linkage disequilibrium in Arabidopsis thaliana. Nat Genet 39 (2007) 1151-1155
-
(2007)
Nat Genet
, vol.39
, pp. 1151-1155
-
-
Kim, S.1
Plagnol, V.2
Hu, T.T.3
Toomajian, C.4
Clark, R.M.5
Ossowski, S.6
Ecker, J.R.7
Weigel, D.8
Nordborg, M.9
-
7
-
-
57649121742
-
Next-generation genetics in plants
-
Nordborg M., and Weigel D. Next-generation genetics in plants. Nature 456 (2008) 720-723
-
(2008)
Nature
, vol.456
, pp. 720-723
-
-
Nordborg, M.1
Weigel, D.2
-
8
-
-
57149099394
-
Sequencing of natural strains of Arabidopsis thaliana with short reads
-
This comprehensive study, after analyzing 15-25-fold coverage in Illumina sequencing-by-synthesis reads for the reference accession, Col-0, and two divergent strains, Bur-0 and Tsu-1, has revealed that the nuclear genomes of natural strains of Arabidopsis thaliana can differ by several percent in their sequence.
-
Ossowski S., Schneeberger K., Clark R.M., Lanz C., Warthmann N., and Weigel D. Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res 18 (2008) 2024-2033. This comprehensive study, after analyzing 15-25-fold coverage in Illumina sequencing-by-synthesis reads for the reference accession, Col-0, and two divergent strains, Bur-0 and Tsu-1, has revealed that the nuclear genomes of natural strains of Arabidopsis thaliana can differ by several percent in their sequence.
-
(2008)
Genome Res
, vol.18
, pp. 2024-2033
-
-
Ossowski, S.1
Schneeberger, K.2
Clark, R.M.3
Lanz, C.4
Warthmann, N.5
Weigel, D.6
-
9
-
-
44449097007
-
A global perspective of the richness and evenness of traditional crop-variety diversity maintained by farming communities
-
Data on the use of landraces and their number versus improved varieties were gathered from 27 crop species over 10 years in eight countries and five continents, at both farm and community levels. This study demonstrates that considerable crop diversity can be maintained on small farms in the form of traditional crop varieties adopting distinctly diverse strategies.
-
Jarvis D.I., Brown A.H.D., Cuong P.H., Collado-Panduro L., Latournerie-Moreno L., Gyawali S., Tanto T., Sawadogo M., Mar I., Sadiki M., et al. A global perspective of the richness and evenness of traditional crop-variety diversity maintained by farming communities. Proc Natl Acad Sci 105 (2008) 5326-5331. Data on the use of landraces and their number versus improved varieties were gathered from 27 crop species over 10 years in eight countries and five continents, at both farm and community levels. This study demonstrates that considerable crop diversity can be maintained on small farms in the form of traditional crop varieties adopting distinctly diverse strategies.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 5326-5331
-
-
Jarvis, D.I.1
Brown, A.H.D.2
Cuong, P.H.3
Collado-Panduro, L.4
Latournerie-Moreno, L.5
Gyawali, S.6
Tanto, T.7
Sawadogo, M.8
Mar, I.9
Sadiki, M.10
-
10
-
-
1942490616
-
Domestication as a long-term selection experiment
-
Gepts P. Domestication as a long-term selection experiment. Plant Breed Rev 24 (2004) 1-44
-
(2004)
Plant Breed Rev
, vol.24
, pp. 1-44
-
-
Gepts, P.1
-
11
-
-
33845618112
-
The molecular genetics of crop domestication
-
Doebley J.F., Gaut B.S., and Smith B.D. The molecular genetics of crop domestication. Cell 127 (2006) 1309-1321
-
(2006)
Cell
, vol.127
, pp. 1309-1321
-
-
Doebley, J.F.1
Gaut, B.S.2
Smith, B.D.3
-
12
-
-
34447276219
-
Plant domestication, a unique opportunity to identify the genetic basis of adaptation
-
Ross-Ibarra J., Morrell P.L., and Gaut B.S. Plant domestication, a unique opportunity to identify the genetic basis of adaptation. Proc Natl Acad Sci USA 104 (2007) 8641-8648
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8641-8648
-
-
Ross-Ibarra, J.1
Morrell, P.L.2
Gaut, B.S.3
-
13
-
-
60149084807
-
The nature of selection during plant domestication
-
This paper reviews recent archeological and genetic studies that provide a clear picture of the selective pressures associated with crop origins and diversification. This combined view can increase insight into the nature of evolutionary factors during plant domestication.
-
Purugganan M.D., and Fuller D.Q. The nature of selection during plant domestication. Nature 457 (2009) 843-848. This paper reviews recent archeological and genetic studies that provide a clear picture of the selective pressures associated with crop origins and diversification. This combined view can increase insight into the nature of evolutionary factors during plant domestication.
-
(2009)
Nature
, vol.457
, pp. 843-848
-
-
Purugganan, M.D.1
Fuller, D.Q.2
-
14
-
-
73349097305
-
Artificial selection and domestication: modern lessons from Darwin's enduring analogy
-
Gregory T.R. Artificial selection and domestication: modern lessons from Darwin's enduring analogy. Evol Educ Outreach 2 (2009) 5-27
-
(2009)
Evol Educ Outreach
, vol.2
, pp. 5-27
-
-
Gregory, T.R.1
-
15
-
-
67649458404
-
A comparative view of the evolution of grasses under domestication
-
Glémin S., and Bataillon T. A comparative view of the evolution of grasses under domestication. New Phytologist 183 (2009) 273-290
-
(2009)
New Phytologist
, vol.183
, pp. 273-290
-
-
Glémin, S.1
Bataillon, T.2
-
16
-
-
77951295949
-
Domestication of the Triticeae in the fertile crescent
-
Feuillet C., and Muehlbauer G.J. (Eds), Springer
-
Kilian B., Özkan H., Pozzi C., and Salamini F. Domestication of the Triticeae in the fertile crescent. In: Feuillet C., and Muehlbauer G.J. (Eds). Genetics and Genomics of the Triticeae (2009), Springer 81-119
-
(2009)
Genetics and Genomics of the Triticeae
, pp. 81-119
-
-
Kilian, B.1
Özkan, H.2
Pozzi, C.3
Salamini, F.4
-
17
-
-
37649020792
-
Extensive simple sequence repeat genotyping of potato landraces supports a major reevaluation of their gene pool structure and classification
-
Spooner D.M., Nunez J., Trujillo G., del Rosario Herrera M., Guzman F., and Ghislain M. Extensive simple sequence repeat genotyping of potato landraces supports a major reevaluation of their gene pool structure and classification. Proc Natl Acad Sci USA 104 (2007) 19398-19403
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 19398-19403
-
-
Spooner, D.M.1
Nunez, J.2
Trujillo, G.3
del Rosario Herrera, M.4
Guzman, F.5
Ghislain, M.6
-
18
-
-
69249203823
-
Multilocus sequence data reveal extensive departures from equilibrium in domesticated tomato (Solanum lycopersicum L.)
-
Labate J.A., Robertson L.D., and Baldo A.M. Multilocus sequence data reveal extensive departures from equilibrium in domesticated tomato (Solanum lycopersicum L.). Heredity 103 (2009) 257-267
-
(2009)
Heredity
, vol.103
, pp. 257-267
-
-
Labate, J.A.1
Robertson, L.D.2
Baldo, A.M.3
-
19
-
-
37549005616
-
Molecular diversity at 18 loci in 321 wild and 92 domesticate lines reveal no reduction of nucleotide diversity during Triticum monococcum (einkorn) domestication: implications for the origin of agriculture
-
Kilian B., Özkan H., Walther A., Kohl J., Dagan T., Salamini F., and Martin W. Molecular diversity at 18 loci in 321 wild and 92 domesticate lines reveal no reduction of nucleotide diversity during Triticum monococcum (einkorn) domestication: implications for the origin of agriculture. Mol Biol Evol 24 (2007) 2657-2668
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2657-2668
-
-
Kilian, B.1
Özkan, H.2
Walther, A.3
Kohl, J.4
Dagan, T.5
Salamini, F.6
Martin, W.7
-
20
-
-
61649095160
-
Structure of genetic diversity in the two major gene pools of common bean (Phaseolus vulgaris L., Fabaceae)
-
Kwak M., and Gepts P. Structure of genetic diversity in the two major gene pools of common bean (Phaseolus vulgaris L., Fabaceae). Theor Appl Genet 118 (2009) 979-992
-
(2009)
Theor Appl Genet
, vol.118
, pp. 979-992
-
-
Kwak, M.1
Gepts, P.2
-
21
-
-
70349565077
-
Combining biological approaches to shed light on evolution of edible bananas
-
Perrier X., Bakry F., Carreel F., Jenny C., Horry J.P., Lebot V., and Hippolyte I. Combining biological approaches to shed light on evolution of edible bananas. Ethnobot Res Appl 7 (2009) 199-216
-
(2009)
Ethnobot Res Appl
, vol.7
, pp. 199-216
-
-
Perrier, X.1
Bakry, F.2
Carreel, F.3
Jenny, C.4
Horry, J.P.5
Lebot, V.6
Hippolyte, I.7
-
22
-
-
19744371138
-
The effects of artificial selection on the maize genome
-
Wright S.I., Bi I.V., Schroeder S.G., Yamasaki M., Doebley J.F., McMullen M.D., and Gaut B.S. The effects of artificial selection on the maize genome. Science 308 (2005) 1310-1314
-
(2005)
Science
, vol.308
, pp. 1310-1314
-
-
Wright, S.I.1
Bi, I.V.2
Schroeder, S.G.3
Yamasaki, M.4
Doebley, J.F.5
McMullen, M.D.6
Gaut, B.S.7
-
23
-
-
36549050856
-
Crop evolution: from genetics to genomics
-
A well documented opinion forecasting that genome-wide analyses considering a large and essentially random collection of genes will result in the identification of agronomically important genes that would have otherwise been overlooked.
-
Burke J.M., Burger J.C., and Chapman M.A. Crop evolution: from genetics to genomics. Curr Opin Genet Dev 17 (2007) 525-532. A well documented opinion forecasting that genome-wide analyses considering a large and essentially random collection of genes will result in the identification of agronomically important genes that would have otherwise been overlooked.
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 525-532
-
-
Burke, J.M.1
Burger, J.C.2
Chapman, M.A.3
-
24
-
-
45849085426
-
The role of regulatory genes during maize domestication: evidence from nucleotide polymorphism and gene expression
-
Nucleotide diversity at 72 candidate genes in maize was investigated, highlighting 17 genes that were potential targets of selection during domestication. Domestication genes appear to be expressed on average at a significantly higher level than neutral genes in reproductive organs.
-
Zhao Q., Thuillet A.C., Uhlmann N.K., Weber A., Rafalski J.A., Allen S.M., Tingey S., and Doebley J. The role of regulatory genes during maize domestication: evidence from nucleotide polymorphism and gene expression. Genetics 178 (2008) 2133-2143. Nucleotide diversity at 72 candidate genes in maize was investigated, highlighting 17 genes that were potential targets of selection during domestication. Domestication genes appear to be expressed on average at a significantly higher level than neutral genes in reproductive organs.
-
(2008)
Genetics
, vol.178
, pp. 2133-2143
-
-
Zhao, Q.1
Thuillet, A.C.2
Uhlmann, N.K.3
Weber, A.4
Rafalski, J.A.5
Allen, S.M.6
Tingey, S.7
Doebley, J.8
-
25
-
-
35748969870
-
New insights into the history of rice domestication
-
Kovach M.J., Sweeney M.T., and McCouch S.R. New insights into the history of rice domestication. Trends Genet 23 11 (2007) 578-587
-
(2007)
Trends Genet
, vol.23
, Issue.11
, pp. 578-587
-
-
Kovach, M.J.1
Sweeney, M.T.2
McCouch, S.R.3
-
26
-
-
34347262453
-
The puzzle of rice domestication
-
Sang T., and Ge S. The puzzle of rice domestication. J Integr Plant Biol 49 (2007) 760-768
-
(2007)
J Integr Plant Biol
, vol.49
, pp. 760-768
-
-
Sang, T.1
Ge, S.2
-
27
-
-
39749148897
-
The evolving story of rice evolution
-
Vaughan D.A., Lu B.R., and Tomooka N. The evolving story of rice evolution. Plant Sci 174 (2008) 394-408
-
(2008)
Plant Sci
, vol.174
, pp. 394-408
-
-
Vaughan, D.A.1
Lu, B.R.2
Tomooka, N.3
-
29
-
-
70350132294
-
Selection on grain shattering genes and rates of rice domestication
-
10.1111/j.1469-8137.2009.02984.x
-
Zhang L.B., Zhu Q., Wu Z.Q., Ross-Ibarra J., Gaut B.S., Ge S., and Sang T. Selection on grain shattering genes and rates of rice domestication. New Phytologist (2009) 10.1111/j.1469-8137.2009.02984.x
-
(2009)
New Phytologist
-
-
Zhang, L.B.1
Zhu, Q.2
Wu, Z.Q.3
Ross-Ibarra, J.4
Gaut, B.S.5
Ge, S.6
Sang, T.7
-
30
-
-
70149120049
-
Evolutionary history of GS3, a gene conferring grain length in rice
-
An exemplary study in rice, reporting the cloning and characterization of GS3, a gene controlling grain length. Haplotype analysis within and around GS3 traced the origin of the long-grain allele to a japonica-like ancestor and demonstrated introgression into the indica gene pool, although the long-grain trait is usually considered an indica feature.
-
Takano-Kai N., Jiang H., Kubo T., Sweeney M., Matsumoto T., Kanamori H., Padhukasahasram B., Bustamante C., Yoshimura A., Doi K., and McCouch S. Evolutionary history of GS3, a gene conferring grain length in rice. Genetics 182 (2009) 1323-31334. An exemplary study in rice, reporting the cloning and characterization of GS3, a gene controlling grain length. Haplotype analysis within and around GS3 traced the origin of the long-grain allele to a japonica-like ancestor and demonstrated introgression into the indica gene pool, although the long-grain trait is usually considered an indica feature.
-
(2009)
Genetics
, vol.182
, pp. 1323-31334
-
-
Takano-Kai, N.1
Jiang, H.2
Kubo, T.3
Sweeney, M.4
Matsumoto, T.5
Kanamori, H.6
Padhukasahasram, B.7
Bustamante, C.8
Yoshimura, A.9
Doi, K.10
McCouch, S.11
-
31
-
-
58449132916
-
Genes and mutations underlying domestication transitions in grasses
-
Sang T. Genes and mutations underlying domestication transitions in grasses. Plant Physiol 149 (2009) 63-70
-
(2009)
Plant Physiol
, vol.149
, pp. 63-70
-
-
Sang, T.1
-
32
-
-
47249122937
-
Characterization of the major fragrance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice
-
Bourgis F., Guyot R., Gherbi H., Tailliez E., Amabile I., Salse J., Lorieux M., Delseny M., and Ghesquière A. Characterization of the major fragrance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice. Theor Appl Genet 117 (2008) 353-368
-
(2008)
Theor Appl Genet
, vol.117
, pp. 353-368
-
-
Bourgis, F.1
Guyot, R.2
Gherbi, H.3
Tailliez, E.4
Amabile, I.5
Salse, J.6
Lorieux, M.7
Delseny, M.8
Ghesquière, A.9
-
34
-
-
68149145780
-
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
-
The authors determined SNP variation in 100 Mb of the rice genome and describe the characterization of 160 000 nonredundant SNPs distributed across the entire genome of 20 rice varieties. Typical haplotype blocks in Indica varieties reach 200 kb. Shared SNPs among rice groups indicate introgression caused by breeding, often bearing quantitative trait loci (QTLs) for important traits, or historical out-crossing events. The number of SNPs appears sufficient for most foreseen applications, whereas the array of rice varieties must be broadened in order to allow recognition of minority varietal groups, to offer a representation of the wild progenitors, and ultimately to provide statistical power to take full advantage of the unprecedented level of genomic resolution.
-
McNally K.L., Childs K.L., Bohnert R., Davidson R.M., Zhao K., Ulat V.J., Zeller G., Clark R.M., Hoen D.R., Bureau T.E., et al. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc Natl Acad Sci USA 106 (2009) 12273-12278. The authors determined SNP variation in 100 Mb of the rice genome and describe the characterization of 160 000 nonredundant SNPs distributed across the entire genome of 20 rice varieties. Typical haplotype blocks in Indica varieties reach 200 kb. Shared SNPs among rice groups indicate introgression caused by breeding, often bearing quantitative trait loci (QTLs) for important traits, or historical out-crossing events. The number of SNPs appears sufficient for most foreseen applications, whereas the array of rice varieties must be broadened in order to allow recognition of minority varietal groups, to offer a representation of the wild progenitors, and ultimately to provide statistical power to take full advantage of the unprecedented level of genomic resolution.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12273-12278
-
-
McNally, K.L.1
Childs, K.L.2
Bohnert, R.3
Davidson, R.M.4
Zhao, K.5
Ulat, V.J.6
Zeller, G.7
Clark, R.M.8
Hoen, D.R.9
Bureau, T.E.10
-
35
-
-
34250103509
-
Isozymes and classification of Asian rice varieties
-
Glaszmann J.C. Isozymes and classification of Asian rice varieties. Theor Appl Genet 74 (1987) 21-30
-
(1987)
Theor Appl Genet
, vol.74
, pp. 21-30
-
-
Glaszmann, J.C.1
-
36
-
-
61349108745
-
A genomewide admixture mapping study for yield factors and morphological traits in a cultivated cocoa (Theobroma cacao L.) population
-
Two-hundred and fifty-seven Criollo cocoa individuals were analyzed with 92 microsatellite markers in order to make use of the extensive LD observed for this germplasm compartment in an earlier study. This modern cultivated population exhibited a wide range of variation and significant associations between markers and yield factors were identified.
-
Marcano M., Morales S., Hoyer M.T., Courtois B., Risterucci A.M., Fouet O., Pugh T., Cros E., Gonzalez V., Dagert M., and Lanaud C. A genomewide admixture mapping study for yield factors and morphological traits in a cultivated cocoa (Theobroma cacao L.) population. Tree Genet Genomes 5 (2009) 329-337. Two-hundred and fifty-seven Criollo cocoa individuals were analyzed with 92 microsatellite markers in order to make use of the extensive LD observed for this germplasm compartment in an earlier study. This modern cultivated population exhibited a wide range of variation and significant associations between markers and yield factors were identified.
-
(2009)
Tree Genet Genomes
, vol.5
, pp. 329-337
-
-
Marcano, M.1
Morales, S.2
Hoyer, M.T.3
Courtois, B.4
Risterucci, A.M.5
Fouet, O.6
Pugh, T.7
Cros, E.8
Gonzalez, V.9
Dagert, M.10
Lanaud, C.11
-
37
-
-
56849089213
-
The making of a compound inflorescence in tomato and related nightshades
-
A clearly presented model of transient sequential expression of two genes, compound inflorescence (s) followed by anantha (an), which promotes branch termination and flower initiation in sympodial plants. Gene s, responsible for a major portion of inflorescence variation in domesticated tomatoes, relates to a tomato mutant described a century ago.
-
Lippman Z.B., Cohen O., Alvarez J.P., Abu-Abied M., Pekker I., Paran I., Eshed Y., and Zamir D. The making of a compound inflorescence in tomato and related nightshades. PLoS Biol 6 (2008) 2424-2435. A clearly presented model of transient sequential expression of two genes, compound inflorescence (s) followed by anantha (an), which promotes branch termination and flower initiation in sympodial plants. Gene s, responsible for a major portion of inflorescence variation in domesticated tomatoes, relates to a tomato mutant described a century ago.
-
(2008)
PLoS Biol
, vol.6
, pp. 2424-2435
-
-
Lippman, Z.B.1
Cohen, O.2
Alvarez, J.P.3
Abu-Abied, M.4
Pekker, I.5
Paran, I.6
Eshed, Y.7
Zamir, D.8
-
38
-
-
77950094520
-
-
Heredity advance online publication, 18 November, doi:10.1038/hdy.2009.148
-
Fournier-Level A, Lacombe T, Le Cunff L, Boursiquot J-M, This P: Evolution of the VvMybA gene family, the major determinant of berry colour in cultivated grapevine (Vitis vinifera L.). Heredity advance online publication, 18 November 2009; doi:10.1038/hdy.2009.148.
-
(2009)
Evolution of the VvMybA gene family, the major determinant of berry colour in cultivated grapevine (Vitis vinifera L.)
-
-
Fournier-Level, A.1
Lacombe, T.2
Le Cunff, L.3
Boursiquot, J.-M.4
This, P.5
-
39
-
-
33846594414
-
Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene
-
The authors cloned the gene responsible for a six-rowed spike in barley (vrs1) and demonstrated that the six-row phenotype originated several times, through independent mutations of Vrs1.
-
Komatsuda T., Pourkheirandish M., He C., Azhaguvel P., Kanamori H., Perovic D., Stein N., Graner A., Wicker T., Tagiri A., et al. Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc Natl Acad Sci USA 104 (2007) 1424-1429. The authors cloned the gene responsible for a six-rowed spike in barley (vrs1) and demonstrated that the six-row phenotype originated several times, through independent mutations of Vrs1.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1424-1429
-
-
Komatsuda, T.1
Pourkheirandish, M.2
He, C.3
Azhaguvel, P.4
Kanamori, H.5
Perovic, D.6
Stein, N.7
Graner, A.8
Wicker, T.9
Tagiri, A.10
-
40
-
-
41649088049
-
Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway
-
Taketa S., Amano S., Tsujino Y., Sato T., Saisho D., Kakeda K., Nomura M., Suzuki T., Matsumoto T., Sato K., et al. Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway. Proc Natl Acad Sci USA 105 (2008) 4062-4067
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 4062-4067
-
-
Taketa, S.1
Amano, S.2
Tsujino, Y.3
Sato, T.4
Saisho, D.5
Kakeda, K.6
Nomura, M.7
Suzuki, T.8
Matsumoto, T.9
Sato, K.10
-
41
-
-
55049095469
-
Control of rice grain-filling and yield by a gene with a potential signature of domestication
-
The paper reports the isolation and functional analysis of a gene involved in grain incomplete filling (GIF1) that encodes a cell-wall invertase. This gene is required for carbon partitioning during early grain filling and was probably selected during domestication.
-
Wang E., Wang J., Zhu X., Hao W., Wang L., Li Q., Zhang L., He W., Lu B., Lin H., et al. Control of rice grain-filling and yield by a gene with a potential signature of domestication. Nat Genet 40 (2008) 1370-1374. The paper reports the isolation and functional analysis of a gene involved in grain incomplete filling (GIF1) that encodes a cell-wall invertase. This gene is required for carbon partitioning during early grain filling and was probably selected during domestication.
-
(2008)
Nat Genet
, vol.40
, pp. 1370-1374
-
-
Wang, E.1
Wang, J.2
Zhu, X.3
Hao, W.4
Wang, L.5
Li, Q.6
Zhang, L.7
He, W.8
Lu, B.9
Lin, H.10
-
42
-
-
48349120780
-
Deletion in a gene associated with grain size increased yields during rice domestication
-
Shomura A., Izawa T., Ebana K., Ebitani T., Kanegae H., Konishi S., and Yano M. Deletion in a gene associated with grain size increased yields during rice domestication. Nat Genet 40 (2008) 1023-1028
-
(2008)
Nat Genet
, vol.40
, pp. 1023-1028
-
-
Shomura, A.1
Izawa, T.2
Ebana, K.3
Ebitani, T.4
Kanegae, H.5
Konishi, S.6
Yano, M.7
-
43
-
-
57049139307
-
Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight
-
Weng J., Gu S., Wan X., Gao H., Guo T., Su N., Lei C., Zhang X., Cheng Z., Guo X., et al. Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight. Cell Res 18 (2008) 1199-1209
-
(2008)
Cell Res
, vol.18
, pp. 1199-1209
-
-
Weng, J.1
Gu, S.2
Wan, X.3
Gao, H.4
Guo, T.5
Su, N.6
Lei, C.7
Zhang, X.8
Cheng, Z.9
Guo, X.10
-
44
-
-
51749088616
-
Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars
-
Konishi S., Ebana K., and Izawa T. Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars. Plant Cell Physiol 49 (2008) 1283-1293
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 1283-1293
-
-
Konishi, S.1
Ebana, K.2
Izawa, T.3
-
45
-
-
49849106808
-
Phylogeographic evidence of crop neodiversity in sorghum
-
Sequence diversity was surveyed with respect to six candidate genes for grain quality among 194 sorghum accessions representative of cultivated species. Two of these genes, in particular opaque-2, displayed novel variations outside the area of origin of cultivated sorghum. These are derived from post-domestication mutations, suggesting that neo-diversity contributed to new adaptations for human uses.
-
de Alencar Figueiredo L.F., Calatayud C., Dupuits C., Billot C., Rami J.F., Brunel D., Perrier X., Courtois B., Deu M., and Glaszmann J.C. Phylogeographic evidence of crop neodiversity in sorghum. Genetics 179 (2008) 997-1008. Sequence diversity was surveyed with respect to six candidate genes for grain quality among 194 sorghum accessions representative of cultivated species. Two of these genes, in particular opaque-2, displayed novel variations outside the area of origin of cultivated sorghum. These are derived from post-domestication mutations, suggesting that neo-diversity contributed to new adaptations for human uses.
-
(2008)
Genetics
, vol.179
, pp. 997-1008
-
-
de Alencar Figueiredo, L.F.1
Calatayud, C.2
Dupuits, C.3
Billot, C.4
Rami, J.F.5
Brunel, D.6
Perrier, X.7
Courtois, B.8
Deu, M.9
Glaszmann, J.C.10
-
46
-
-
58149346217
-
Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize
-
Camus-Kulandaivelu L., Chevin L.M., Tollon-Cordet C., Charcosset A., Manicacci D., and Tenaillon M.I. Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize. Genetics 180 (2008) 1107-1121
-
(2008)
Genetics
, vol.180
, pp. 1107-1121
-
-
Camus-Kulandaivelu, L.1
Chevin, L.M.2
Tollon-Cordet, C.3
Charcosset, A.4
Manicacci, D.5
Tenaillon, M.I.6
-
47
-
-
58549105499
-
Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice
-
A comprehensive analysis of the variation in the Sub1 gene cluster identified by positional cloning in rice, which is now massively transferred through marker-assisted selection to other varietal backgrounds. This is a small gene cluster that the authors resolve through phylogenetic analysis before looking at sequence variation between wild rice and several varietal groups. They relate the original distribution of the submergence tolerance haplotypes, localized between Orissa state, India, and Sri Lanka, to past human relationships between Eastern India and Sri Lanka, supported by biological similarities for human leucocyte antigens (HLA).
-
Fukao T., Harris T., and Bailey-Serres J. Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice. Ann Bot 103 (2009) 143-150. A comprehensive analysis of the variation in the Sub1 gene cluster identified by positional cloning in rice, which is now massively transferred through marker-assisted selection to other varietal backgrounds. This is a small gene cluster that the authors resolve through phylogenetic analysis before looking at sequence variation between wild rice and several varietal groups. They relate the original distribution of the submergence tolerance haplotypes, localized between Orissa state, India, and Sri Lanka, to past human relationships between Eastern India and Sri Lanka, supported by biological similarities for human leucocyte antigens (HLA).
-
(2009)
Ann Bot
, vol.103
, pp. 143-150
-
-
Fukao, T.1
Harris, T.2
Bailey-Serres, J.3
-
48
-
-
33745096217
-
Rapid generation of new powdery mildew resistance genes after wheat domestication
-
The paper reports that Pm3 resistance alleles from bread wheat were all derived from the susceptible allele Pm3CS in agricultural ecosystems after the formation of hexaploid wheat.
-
Yahiaoui N., Brunner S., and Keller B. Rapid generation of new powdery mildew resistance genes after wheat domestication. Plant J 47 (2006) 85-98. The paper reports that Pm3 resistance alleles from bread wheat were all derived from the susceptible allele Pm3CS in agricultural ecosystems after the formation of hexaploid wheat.
-
(2006)
Plant J
, vol.47
, pp. 85-98
-
-
Yahiaoui, N.1
Brunner, S.2
Keller, B.3
-
49
-
-
67249165870
-
Unlocking wheat genetic resources for the molecular identification of previously undescribed functional alleles at the Pm3 resistance locus
-
A large-scale allele-mining project through molecular characterization of wheat gene bank accessions. The authors first selected a set of 1320 bread wheat landraces from a database of 16 089 accessions, using the focused identification of germplasm strategy, which led to selecting accessions from 323 sites likely to be exposed to high selection pressure for powdery mildew. Using the known molecular structure of the Pm3 locus, it was possible to isolate seven new resistances, doubling the known functional allelic diversity at this locus.
-
Bhullar N.K., Street K., Mackay M., Yahiaoui N., and Keller B. Unlocking wheat genetic resources for the molecular identification of previously undescribed functional alleles at the Pm3 resistance locus. Proc Natl Acad Sci USA 106 (2009) 9519-9524. A large-scale allele-mining project through molecular characterization of wheat gene bank accessions. The authors first selected a set of 1320 bread wheat landraces from a database of 16 089 accessions, using the focused identification of germplasm strategy, which led to selecting accessions from 323 sites likely to be exposed to high selection pressure for powdery mildew. Using the known molecular structure of the Pm3 locus, it was possible to isolate seven new resistances, doubling the known functional allelic diversity at this locus.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 9519-9524
-
-
Bhullar, N.K.1
Street, K.2
Mackay, M.3
Yahiaoui, N.4
Keller, B.5
-
50
-
-
52949124435
-
The genetic expectations of a protracted model for the origins of domesticated crops
-
Allaby R.G., Fuller D.Q., and Brown T.A. The genetic expectations of a protracted model for the origins of domesticated crops. Proc Natl Acad Sci USA 105 (2008) 13982-13986
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13982-13986
-
-
Allaby, R.G.1
Fuller, D.Q.2
Brown, T.A.3
-
51
-
-
34848916049
-
Genome-wide patterns of nucleotide polymorphism in domesticated rice
-
Caicedo A.L., Williamson S.H., Hernandez R.D., Boyko A., Fledel-Alon A., York T.L., Polato N.R., Olsen K.M., Nielsen R., McCouch S.R., et al. Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genet 3 (2007) e163
-
(2007)
PLoS Genet
, vol.3
-
-
Caicedo, A.L.1
Williamson, S.H.2
Hernandez, R.D.3
Boyko, A.4
Fledel-Alon, A.5
York, T.L.6
Polato, N.R.7
Olsen, K.M.8
Nielsen, R.9
McCouch, S.R.10
-
52
-
-
0000618321
-
Genetic perspective of germplasm conservation
-
Arber W., Llimensee K., Peacock W.J., and Stralinger P. (Eds), Cambridge University Press
-
Frankel O.H. Genetic perspective of germplasm conservation. In: Arber W., Llimensee K., Peacock W.J., and Stralinger P. (Eds). Genetic Manipulations: Impact on Man and Society (1984), Cambridge University Press 161-170
-
(1984)
Genetic Manipulations: Impact on Man and Society
, pp. 161-170
-
-
Frankel, O.H.1
-
53
-
-
0001447650
-
The case for core collections
-
Brown A.H.D., Frankel O.H., Marshall D.R., and Williams J.T. (Eds), Cambridge University Press, Cambridge, UK. A very thoughtful dissertation on the definition of core collections, their utility, constitution, and use, founded on population genetics methods.
-
Brown A.H.D. The case for core collections. In: Brown A.H.D., Frankel O.H., Marshall D.R., and Williams J.T. (Eds). The Use of Plant Genetic Resources (1989), Cambridge University Press, Cambridge, UK 135-156. A very thoughtful dissertation on the definition of core collections, their utility, constitution, and use, founded on population genetics methods.
-
(1989)
The Use of Plant Genetic Resources
, pp. 135-156
-
-
Brown, A.H.D.1
-
54
-
-
0345651521
-
Molecular variation as a diverse source of disease resistance in cultivated rice
-
Khush G.S. (Ed), IRRI
-
Glaszmann J.C., Mew T., Hibino H., Kim C.K., Vergel de Dios-Mew T.I., Vera Cruz C.M., Notteghem J.L., and Bonman J.M. Molecular variation as a diverse source of disease resistance in cultivated rice. In: Khush G.S. (Ed). Rice Genetics III: Proceedings (1995), IRRI 460-465
-
(1995)
Rice Genetics III: Proceedings
, pp. 460-465
-
-
Glaszmann, J.C.1
Mew, T.2
Hibino, H.3
Kim, C.K.4
Vergel de Dios-Mew, T.I.5
Vera Cruz, C.M.6
Notteghem, J.L.7
Bonman, J.M.8
-
55
-
-
56549122163
-
Genetic structure, diversity and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.)
-
This study reflects the process followed in multi-partner projects supported by the Generation Challenge Programme. A composite collection of 2915 accessions, consisting of accessions from ICRISAT and ICARDA (International Center for Agricultural Research in the Dry Areas) was surveyed for 48 SSR loci, revealing a total of 1683 alleles. A reference set of 300 accessions was identified, making use of the existing ICRISAT mini core collection and the SSR data; it captured 1315 (78%) of the initial 1683 alleles, essentially leaving out some rare alleles. The reference set represents all major branches of the neighbor-joining tree that summarizes the variation in the composite collection.
-
Upadhyaya H.D., Dwivedi S.L., Baum M., Varshney R.K., Udupa S.M., Gowda C.L.L., Hoisington D., and Singh S. Genetic structure, diversity and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biol 8 (2008) 106. This study reflects the process followed in multi-partner projects supported by the Generation Challenge Programme. A composite collection of 2915 accessions, consisting of accessions from ICRISAT and ICARDA (International Center for Agricultural Research in the Dry Areas) was surveyed for 48 SSR loci, revealing a total of 1683 alleles. A reference set of 300 accessions was identified, making use of the existing ICRISAT mini core collection and the SSR data; it captured 1315 (78%) of the initial 1683 alleles, essentially leaving out some rare alleles. The reference set represents all major branches of the neighbor-joining tree that summarizes the variation in the composite collection.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 106
-
-
Upadhyaya, H.D.1
Dwivedi, S.L.2
Baum, M.3
Varshney, R.K.4
Udupa, S.M.5
Gowda, C.L.L.6
Hoisington, D.7
Singh, S.8
-
56
-
-
56649115880
-
Phenotypic diversity in cold-tolerant peanut (Arachis hypogaea L.) germplasm
-
Upadhyaya H.D., Reddy L.J., Gowda C.L.L., and Singh S. Phenotypic diversity in cold-tolerant peanut (Arachis hypogaea L.) germplasm. Euphytica 165 (2009) 279-291
-
(2009)
Euphytica
, vol.165
, pp. 279-291
-
-
Upadhyaya, H.D.1
Reddy, L.J.2
Gowda, C.L.L.3
Singh, S.4
-
57
-
-
0034951896
-
A mini core subset for capturing diversity and promoting utilization of chickpea genetic resources in crop improvement
-
Upadhyaya H.D., and Ortiz R. A mini core subset for capturing diversity and promoting utilization of chickpea genetic resources in crop improvement. Theor Appl Genet 102 (2001) 1292-1298
-
(2001)
Theor Appl Genet
, vol.102
, pp. 1292-1298
-
-
Upadhyaya, H.D.1
Ortiz, R.2
-
58
-
-
70349203719
-
Developing a mini core collection of sorghum [Sorghum bicolor (L.) Moench] for diversified utilization of germplasm
-
Upadhyaya H.D., Pundir R.P.S., Dwivedi S.L., Gowda C.L.L., Gopal Reddy V., and Singh S. Developing a mini core collection of sorghum [Sorghum bicolor (L.) Moench] for diversified utilization of germplasm. Crop Sci 49 (2009) 1769-1780
-
(2009)
Crop Sci
, vol.49
, pp. 1769-1780
-
-
Upadhyaya, H.D.1
Pundir, R.P.S.2
Dwivedi, S.L.3
Gowda, C.L.L.4
Gopal Reddy, V.5
Singh, S.6
-
59
-
-
85164502327
-
Status and prospects of association mapping in plants
-
Zhu C., Gore M., Buckler E.S., and Yu J. Status and prospects of association mapping in plants. Plant Genome 1 (2008) 5-20
-
(2008)
Plant Genome
, vol.1
, pp. 5-20
-
-
Zhu, C.1
Gore, M.2
Buckler, E.S.3
Yu, J.4
-
60
-
-
58949096406
-
Towards systems genetic analyses in barley: integration of phenotypic, expression and genotype data into genenetwork
-
Druka A., Druka I., Centeno A.G., Li H., Sun Z., Thomas W.T.B., Bonar N., Steffenson B.J., Ullrich S.E., Kleinhofs A., et al. Towards systems genetic analyses in barley: integration of phenotypic, expression and genotype data into genenetwork. BMC Genet 9 (2008) 73
-
(2008)
BMC Genet
, vol.9
, pp. 73
-
-
Druka, A.1
Druka, I.2
Centeno, A.G.3
Li, H.4
Sun, Z.5
Thomas, W.T.B.6
Bonar, N.7
Steffenson, B.J.8
Ullrich, S.E.9
Kleinhofs, A.10
-
61
-
-
62349105879
-
The emergence of whole genome association scans in barley
-
This review presents the current state and the potential of whole-genome association mapping in barley. This crop is the focus of substantial research and stimulates forefront innovative developments.
-
Waugh R., Jannink J.L., Muehlbauer G.J., and Ramsay L. The emergence of whole genome association scans in barley. Curr Opin Plant Biol 12 (2009) 218-222. This review presents the current state and the potential of whole-genome association mapping in barley. This crop is the focus of substantial research and stimulates forefront innovative developments.
-
(2009)
Curr Opin Plant Biol
, vol.12
, pp. 218-222
-
-
Waugh, R.1
Jannink, J.L.2
Muehlbauer, G.J.3
Ramsay, L.4
-
62
-
-
42149123797
-
Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers
-
Deu M., Sagnard F., Chantereau J., Calatayud C., Hérault D., Mariac C., Pham J.L., Vigouroux Y., Kapran I., Traore P.S., et al. Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers. Theor Appl Genet 116 (2008) 903-913
-
(2008)
Theor Appl Genet
, vol.116
, pp. 903-913
-
-
Deu, M.1
Sagnard, F.2
Chantereau, J.3
Calatayud, C.4
Hérault, D.5
Mariac, C.6
Pham, J.L.7
Vigouroux, Y.8
Kapran, I.9
Traore, P.S.10
-
63
-
-
44449107137
-
Synthèse analyse multiéchelle de la diversité génétique des sorghos: compréhension des processus évolutifs pour la conservation in situ
-
Sagnard F., Barnaud A., Deu M., Barro C., Luce C., Billot C., Rami J.F., Bouchet S., Dembélé D., Pomiès V., et al. Synthèse analyse multiéchelle de la diversité génétique des sorghos: compréhension des processus évolutifs pour la conservation in situ. Cah Agric 17 (2008) 114-121
-
(2008)
Cah Agric
, vol.17
, pp. 114-121
-
-
Sagnard, F.1
Barnaud, A.2
Deu, M.3
Barro, C.4
Luce, C.5
Billot, C.6
Rami, J.F.7
Bouchet, S.8
Dembélé, D.9
Pomiès, V.10
-
64
-
-
70349898383
-
A weed-crop complex in Sorghum: the dynamics of genetic diversity in a traditional farming system
-
An interesting picture of microevolution in an agricultural environment. The authors developed a multidisciplinary approach, involving both biologists and social scientists, to investigate the dynamics of genetic diversity of a sorghum weed-crop complex in a village of Duupa farmers in northern Cameroon. Morphological and SSR data are congruent with farmers' taxonomy and confirm the introgressed status of intermediate weedy types. Farmers actively select against these morphotypes, but several practices unconsciously favor gene flow.
-
Barnaud A., Deu M., Garine E., Chantereau J., Justin B., Koïda O.E., McKey D., and Joly H.I. A weed-crop complex in Sorghum: the dynamics of genetic diversity in a traditional farming system. Am J Bot 96 (2009) 1869-1879. An interesting picture of microevolution in an agricultural environment. The authors developed a multidisciplinary approach, involving both biologists and social scientists, to investigate the dynamics of genetic diversity of a sorghum weed-crop complex in a village of Duupa farmers in northern Cameroon. Morphological and SSR data are congruent with farmers' taxonomy and confirm the introgressed status of intermediate weedy types. Farmers actively select against these morphotypes, but several practices unconsciously favor gene flow.
-
(2009)
Am J Bot
, vol.96
, pp. 1869-1879
-
-
Barnaud, A.1
Deu, M.2
Garine, E.3
Chantereau, J.4
Justin, B.5
Koïda, O.E.6
McKey, D.7
Joly, H.I.8
-
65
-
-
60649086548
-
Changes in the diversity and geographic distribution of cultivated millet (Pennisetum glaucum (L.) R. Br.) and sorghum (Sorghum bicolor (L.) Moench) varieties in Niger between 1976 and 2003
-
Bezançon G., Pham J.L., Deu M., Vigouroux Y., Sagnard F., Mariac C., Kapran I., Mamadou A., Gérard B., Ndjeunga J., and Chantereau J. Changes in the diversity and geographic distribution of cultivated millet (Pennisetum glaucum (L.) R. Br.) and sorghum (Sorghum bicolor (L.) Moench) varieties in Niger between 1976 and 2003. Genet Resour Crop Evol 56 (2009) 223-236
-
(2009)
Genet Resour Crop Evol
, vol.56
, pp. 223-236
-
-
Bezançon, G.1
Pham, J.L.2
Deu, M.3
Vigouroux, Y.4
Sagnard, F.5
Mariac, C.6
Kapran, I.7
Mamadou, A.8
Gérard, B.9
Ndjeunga, J.10
Chantereau, J.11
-
66
-
-
70349333177
-
Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet
-
Saïdou A.A., Mariac C., Luong V., Pham J.L., Bezançon G., and Yves Vigouroux Y. Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet. Genetics 182 (2009) 899-910
-
(2009)
Genetics
, vol.182
, pp. 899-910
-
-
Saïdou, A.A.1
Mariac, C.2
Luong, V.3
Pham, J.L.4
Bezançon, G.5
Yves Vigouroux, Y.6
-
67
-
-
68949186256
-
Next generation sequencing technologies and their implications for crop genetics and breeding
-
A timely evaluation of a major trend in biology that will impact plant research. Next-generation sequencing technologies make it possible to sequence hundreds or even thousands of related genomes to sample genetic diversity within and between germplasm pools. Several important areas are outlined, which will enhance progress in crop genetics and breeding, leading to crop improvement.
-
Varshney R.K., Nayak S.N., May G.D., and Jackson S.A. Next generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol 27 (2009) 522-530. A timely evaluation of a major trend in biology that will impact plant research. Next-generation sequencing technologies make it possible to sequence hundreds or even thousands of related genomes to sample genetic diversity within and between germplasm pools. Several important areas are outlined, which will enhance progress in crop genetics and breeding, leading to crop improvement.
-
(2009)
Trends Biotechnol
, vol.27
, pp. 522-530
-
-
Varshney, R.K.1
Nayak, S.N.2
May, G.D.3
Jackson, S.A.4
-
68
-
-
66049132908
-
Global distribution of genomic diversity underscores rich complex history of continental human populations
-
Auton A., Byrc K., Boyko A.R., Lohmueller K.E., Novembre J., Reynolds A., Indap A., Wright M.H., Degenhardt J., Gutenkunst R.N., et al. Global distribution of genomic diversity underscores rich complex history of continental human populations. Genome Res 19 (2009) 795-803
-
(2009)
Genome Res
, vol.19
, pp. 795-803
-
-
Auton, A.1
Byrc, K.2
Boyko, A.R.3
Lohmueller, K.E.4
Novembre, J.5
Reynolds, A.6
Indap, A.7
Wright, M.H.8
Degenhardt, J.9
Gutenkunst, R.N.10
-
69
-
-
66049157487
-
Signals of recent positive selection in a worldwide sample of human populations
-
This paper reports an extension of genome-wide scans for recent positive selection in humans, leading to new insights into mechanisms underlying the extensive phenotypic diversity in our species. The geographic distributions of known selective sweeps are refined, several examples of previously unrecognized candidate selection targets are presented, and several examples of local adaptation between geographically close populations are highlighted.
-
Pickrell J.K., Coop G., Novembre J., Kudaravalli S., Li J., Absher D., Srinivasan B., Barsh G.S., Myers R.M., Feldman M.W., and Prichard J.K. Signals of recent positive selection in a worldwide sample of human populations. Genome Res 19 (2009) 826-837. This paper reports an extension of genome-wide scans for recent positive selection in humans, leading to new insights into mechanisms underlying the extensive phenotypic diversity in our species. The geographic distributions of known selective sweeps are refined, several examples of previously unrecognized candidate selection targets are presented, and several examples of local adaptation between geographically close populations are highlighted.
-
(2009)
Genome Res
, vol.19
, pp. 826-837
-
-
Pickrell, J.K.1
Coop, G.2
Novembre, J.3
Kudaravalli, S.4
Li, J.5
Absher, D.6
Srinivasan, B.7
Barsh, G.S.8
Myers, R.M.9
Feldman, M.W.10
Prichard, J.K.11
-
70
-
-
44949241466
-
Inferring human colonization history using a copying model
-
A statistical approach is presented that uses SNP data to identify sharing of chromosomal segments between populations and to reconstruct a detailed colonization scenario. It is applied to a broad range of human populations and reveals novel details on genetic interactions among populations. This will inspire similar studies in crops, which should disclose parallel patterns given the close interaction between humans and crops.
-
Hellenthal G., Auton A., and Falush D. Inferring human colonization history using a copying model. PLoS Genet 4 (2008) e1000078. A statistical approach is presented that uses SNP data to identify sharing of chromosomal segments between populations and to reconstruct a detailed colonization scenario. It is applied to a broad range of human populations and reveals novel details on genetic interactions among populations. This will inspire similar studies in crops, which should disclose parallel patterns given the close interaction between humans and crops.
-
(2008)
PLoS Genet
, vol.4
-
-
Hellenthal, G.1
Auton, A.2
Falush, D.3
-
71
-
-
77951297333
-
-
Plant explorer, Archaeobotanist, Geneticist, and Plant Breeder
-
Qualset CO: Jack R. Harlan (1917-1988): Plant explorer, Archaeobotanist, Geneticist, and Plant Breeder. http://harlanii.ucdavis.edu/harlan_files/harlan.pdf.
-
(1917)
Jack R
-
-
Qualset, C.O.1
|