메뉴 건너뛰기




Volumn 11, Issue , 2010, Pages

Missing value imputation for epistatic MAPs

Author keywords

[No Author keywords available]

Indexed keywords

DATA ANALYSIS TECHNIQUES; EPISTATIC INTERACTIONS; FUNCTIONAL INTERACTION; HIGH-THROUGHPUT APPROACHES; IMPUTATION STRATEGY; IMPUTATION TECHNIQUES; MISSING VALUE IMPUTATION; NEAREST NEIGHBOR METHOD;

EID: 77950925125     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-197     Document Type: Article
Times cited : (21)

References (34)
  • 1
    • 43249117094 scopus 로고    scopus 로고
    • Functional maps of protein complexes from quantitative genetic interaction data
    • 10.1371/journal.pcbi.1000065, 2289880, 18421374
    • Bandyopadhyay S, Kelley R, Krogan N, Ideker T. Functional maps of protein complexes from quantitative genetic interaction data. PLoS Computational Biology 2008, 4(4):e1000065. 10.1371/journal.pcbi.1000065, 2289880, 18421374.
    • (2008) PLoS Computational Biology , vol.4 , Issue.4
    • Bandyopadhyay, S.1    Kelley, R.2    Krogan, N.3    Ideker, T.4
  • 2
    • 33747367151 scopus 로고    scopus 로고
    • A strategy for extracting and analyzing large-scale quantitative epistatic interaction data
    • 10.1186/gb-2006-7-7-r63, 1779568, 16859555
    • Collins SR, Schuldiner M, Krogan NJ, Weissman JS. A strategy for extracting and analyzing large-scale quantitative epistatic interaction data. Genome Biol 2006, 7(7):R63. 10.1186/gb-2006-7-7-r63, 1779568, 16859555.
    • (2006) Genome Biol , vol.7 , Issue.7
    • Collins, S.R.1    Schuldiner, M.2    Krogan, N.J.3    Weissman, J.S.4
  • 4
    • 53749095489 scopus 로고    scopus 로고
    • Local coherence in genetic interaction patterns reveals prevalent functional versatility
    • 10.1093/bioinformatics/btn440, 18718945
    • Pu S, Ronen K, Vlasblom J, Greenblatt J, Wodak SJ. Local coherence in genetic interaction patterns reveals prevalent functional versatility. Bioinformatics 2008, 24(20):2376-2383. 10.1093/bioinformatics/btn440, 18718945.
    • (2008) Bioinformatics , vol.24 , Issue.20 , pp. 2376-2383
    • Pu, S.1    Ronen, K.2    Vlasblom, J.3    Greenblatt, J.4    Wodak, S.J.5
  • 5
    • 47349120555 scopus 로고    scopus 로고
    • From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions
    • 10.1038/msb.2008.42, 2516364, 18628749
    • Ulitsky I, Shlomi T, Kupiec M, Shamir R. From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions. Mol Syst Biol 2008, 4:209. 10.1038/msb.2008.42, 2516364, 18628749.
    • (2008) Mol Syst Biol , vol.4 , pp. 209
    • Ulitsky, I.1    Shlomi, T.2    Kupiec, M.3    Shamir, R.4
  • 6
    • 13244278004 scopus 로고    scopus 로고
    • Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering
    • 10.1186/1471-2105-5-114, 514701, 15324460
    • de Brevern AG, Hazout S, Malpertuy A. Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering. BMC Bioinformatics 2004, 5:114. 10.1186/1471-2105-5-114, 514701, 15324460.
    • (2004) BMC Bioinformatics , vol.5 , pp. 114
    • de Brevern, A.G.1    Hazout, S.2    Malpertuy, A.3
  • 7
    • 53749091787 scopus 로고    scopus 로고
    • Predicting quantitative genetic interactions by means of sequential matrix approximation
    • 10.1371/journal.pone.0003284, 2538561, 18818762
    • Jarvinen AP, Hiissa J, Elo LL, Aittokallio T. Predicting quantitative genetic interactions by means of sequential matrix approximation. PLoS One 2008, 3(9):e3284. 10.1371/journal.pone.0003284, 2538561, 18818762.
    • (2008) PLoS One , vol.3 , Issue.9
    • Jarvinen, A.P.1    Hiissa, J.2    Elo, L.L.3    Aittokallio, T.4
  • 9
    • 22844450110 scopus 로고    scopus 로고
    • Systematic interpretation of genetic interactions using protein networks
    • 10.1038/nbt1096, 2814446, 15877074
    • Kelley R, Ideker T. Systematic interpretation of genetic interactions using protein networks. Nat Biotechnol 2005, 23(5):561-566. 10.1038/nbt1096, 2814446, 15877074.
    • (2005) Nat Biotechnol , vol.23 , Issue.5 , pp. 561-566
    • Kelley, R.1    Ideker, T.2
  • 10
    • 57149103917 scopus 로고    scopus 로고
    • Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions
    • 10.1101/gr.077693.108, 2593582, 18832443
    • Qi Y, Suhail Y, Lin Y, Boeke JD, Bader JS. Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions. Genome Res 2008, 18(12):1991-2004. 10.1101/gr.077693.108, 2593582, 18832443.
    • (2008) Genome Res , vol.18 , Issue.12 , pp. 1991-2004
    • Qi, Y.1    Suhail, Y.2    Lin, Y.3    Boeke, J.D.4    Bader, J.S.5
  • 11
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • 10.1073/pnas.95.25.14863, 24541, 9843981
    • Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998, 95(25):14863-14868. 10.1073/pnas.95.25.14863, 24541, 9843981.
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 13
    • 39749093807 scopus 로고    scopus 로고
    • Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes
    • 10.1186/1471-2105-9-12, 2253514, 18186917
    • Brock GN, Shaffer JR, Blakesley RE, Lotz MJ, Tseng GC. Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes. BMC Bioinformatics 2008, 9:12. 10.1186/1471-2105-9-12, 2253514, 18186917.
    • (2008) BMC Bioinformatics , vol.9 , pp. 12
    • Brock, G.N.1    Shaffer, J.R.2    Blakesley, R.E.3    Lotz, M.J.4    Tseng, G.C.5
  • 18
    • 2342646842 scopus 로고    scopus 로고
    • LSimpute: accurate estimation of missing values in microarray data with least squares methods
    • 10.1093/nar/gnh026, 374359, 14978222
    • Bo TH, Dysvik B, Jonassen I. LSimpute: accurate estimation of missing values in microarray data with least squares methods. Nucleic Acids Res 2004, 32(3):e34. 10.1093/nar/gnh026, 374359, 14978222.
    • (2004) Nucleic Acids Res , vol.32 , Issue.3
    • Bo, T.H.1    Dysvik, B.2    Jonassen, I.3
  • 19
    • 13444304426 scopus 로고    scopus 로고
    • Missing value estimation for DNA microarray gene expression data: local least squares imputation
    • 10.1093/bioinformatics/bth499, 15333461
    • Kim H, Golub GH, Park H. Missing value estimation for DNA microarray gene expression data: local least squares imputation. Bioinformatics 2005, 21(2):187-198. 10.1093/bioinformatics/bth499, 15333461.
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 187-198
    • Kim, H.1    Golub, G.H.2    Park, H.3
  • 20
    • 0242643743 scopus 로고    scopus 로고
    • A Bayesian missing value estimation method for gene expression profile data
    • 10.1093/bioinformatics/btg287, 14594714
    • Oba S, Sato M, Takemasa I, Monden M, Matsubara K, Ishii S. A Bayesian missing value estimation method for gene expression profile data. Bioinformatics 2003, 19(16):2088-2096. 10.1093/bioinformatics/btg287, 14594714.
    • (2003) Bioinformatics , vol.19 , Issue.16 , pp. 2088-2096
    • Oba, S.1    Sato, M.2    Takemasa, I.3    Monden, M.4    Matsubara, K.5    Ishii, S.6
  • 21
    • 84888275369 scopus 로고    scopus 로고
    • Python implementation of the NN algorithms
    • Python implementation of the NN algorithms. , http://mlg.ucd.ie/emapimputation
  • 22
    • 84888280902 scopus 로고    scopus 로고
    • Matlab implementation of the BPCA algorithm
    • Matlab implementation of the BPCA algorithm. , http://hawaii.sys.i.kyoto-u.ac.jp/~oba/tools/BPCAFill.html
  • 23
    • 19344371607 scopus 로고    scopus 로고
    • Evaluation of missing value estimation for microarray data
    • Nguyen DV, Wang N, Carroll RJ. Evaluation of missing value estimation for microarray data. Journal of Data Science 2004, 2(4):347-370.
    • (2004) Journal of Data Science , vol.2 , Issue.4 , pp. 347-370
    • Nguyen, D.V.1    Wang, N.2    Carroll, R.J.3
  • 27
    • 56649116093 scopus 로고    scopus 로고
    • Optimal stepwise experimental design for pairwise functional interaction studies
    • 10.1093/bioinformatics/btn472, 18805797
    • Casey FP, Cagney G, Krogan NJ, Shields DC. Optimal stepwise experimental design for pairwise functional interaction studies. Bioinformatics 2008, 24(23):2733-2739. 10.1093/bioinformatics/btn472, 18805797.
    • (2008) Bioinformatics , vol.24 , Issue.23 , pp. 2733-2739
    • Casey, F.P.1    Cagney, G.2    Krogan, N.J.3    Shields, D.C.4
  • 28
    • 63349085550 scopus 로고    scopus 로고
    • Up-to-date catalogues of yeast protein complexes
    • 10.1093/nar/gkn1005, 2647312, 19095691
    • Pu S, Wong J, Turner B, Cho E, Wodak SJ. Up-to-date catalogues of yeast protein complexes. Nucleic Acids Res 2009, 37(3):825-831. 10.1093/nar/gkn1005, 2647312, 19095691.
    • (2009) Nucleic Acids Res , vol.37 , Issue.3 , pp. 825-831
    • Pu, S.1    Wong, J.2    Turner, B.3    Cho, E.4    Wodak, S.J.5
  • 30
    • 33846604202 scopus 로고    scopus 로고
    • Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions
    • 10.1038/ng1948, 2716756, 17206143
    • St Onge RP, Mani R, Oh J, Proctor M, Fung E, Davis RW, Nislow C, Roth FP, Giaever G. Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions. Nat Genet 2007, 39(2):199-206. 10.1038/ng1948, 2716756, 17206143.
    • (2007) Nat Genet , vol.39 , Issue.2 , pp. 199-206
    • St Onge, R.P.1    Mani, R.2    Oh, J.3    Proctor, M.4    Fung, E.5    Davis, R.W.6    Nislow, C.7    Roth, F.P.8    Giaever, G.9
  • 33
    • 33746525415 scopus 로고    scopus 로고
    • Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways
    • 10.1038/ng1844, 16845399
    • Lehner B, Crombie C, Tischler J, Fortunato A, Fraser AG. Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways. Nat Genet 2006, 38(8):896-903. 10.1038/ng1844, 16845399.
    • (2006) Nat Genet , vol.38 , Issue.8 , pp. 896-903
    • Lehner, B.1    Crombie, C.2    Tischler, J.3    Fortunato, A.4    Fraser, A.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.