메뉴 건너뛰기




Volumn 156, Issue 4, 2010, Pages 1084-1096

Genome-wide analysis of DNA repeats in Burkholderia cenocepacia J2315 identifies a novel adhesin-like gene unique to epidemic-associated strains of the ET-12 lineage

Author keywords

[No Author keywords available]

Indexed keywords

ADHESIN; PROTEIN HISTIDINE KINASE; REPETITIVE DNA; SCLEROPROTEIN;

EID: 77950678687     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.032623-0     Document Type: Article
Times cited : (29)

References (49)
  • 2
    • 33845869791 scopus 로고    scopus 로고
    • Repseek, a tool to retrieve approximate repeats from large DNA sequences
    • DOI 10.1093/bioinformatics/btl519
    • Achaz, G., Boyer, F., Rocha, E. P., Viari, A. & Coissac, E. (2007). Repseek, a tool to retrieve approximate repeats from large DNA sequences. Bioinformatics 23, 119-121. (Pubitemid 46017864)
    • (2007) Bioinformatics , vol.23 , Issue.1 , pp. 119-121
    • Achaz, G.1    Boyer, F.2    Rocha, E.P.C.3    Viari, A.4    Coissac, E.5
  • 3
    • 4444240572 scopus 로고    scopus 로고
    • The hFbpABC transporter from Haemophilus influenzae functions as a binding-protein-dependent ABC transporter with high specificity and affinity for ferric iron
    • DOI 10.1128/JB.186.18.6220-6229.2004
    • Anderson, D. S., Adhikari, P., Nowalk, A. J., Chen, C. Y. & Mietzner, T. A. (2004). The hFbpABC transporter from Haemophilus influenzae functions as a binding-protein-dependent ABC transporter with high specificity and affinity for ferric iron. J Bacteriol 186, 6220-6229. (Pubitemid 39187010)
    • (2004) Journal of Bacteriology , vol.186 , Issue.18 , pp. 6220-6229
    • Anderson, D.S.1    Adhikari, P.2    Nowalk, A.J.3    Chen, C.Y.4    Mietzner, T.A.5
  • 4
    • 1342302530 scopus 로고    scopus 로고
    • The Burkholderia cepacia Epidemic Strain Marker Is Part of A Novel Genomic Island Encoding Both Virulence and Metabolism-Associated Genes in Burkholderia cenocepacia
    • DOI 10.1128/IAI.72.3.1537-1547.2004
    • Baldwin, A., Sokol, P. A., Parkhill, J. & Mahenthiralingam, E. (2004). The Burkholderia cepacia epidemic strain marker is part of a novel genomic island encoding both virulence and metabolismassociated genes in Burkholderia cenocepacia. Infect Immun 72, 1537-1547. (Pubitemid 38263776)
    • (2004) Infection and Immunity , vol.72 , Issue.3 , pp. 1537-1547
    • Baldwin, A.1    Sokol, P.A.2    Parkhill, J.3    Mahenthiralingam, E.4
  • 5
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson, G. (1999). Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27, 573-580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 6
    • 22544451211 scopus 로고    scopus 로고
    • Use of suppression-subtractive hybridization to identify genes in the Burkholderia cepacia complex that are unique to Burkholderia cenocepacia
    • Bernier, S. P. & Sokol, P. A. (2005). Use of suppression-subtractive hybridization to identify genes in the Burkholderia cepacia complex that are unique to Burkholderia cenocepacia. J Bacteriol 187, 5278-5291.
    • (2005) J Bacteriol , vol.187 , pp. 5278-5291
    • Bernier, S.P.1    Sokol, P.A.2
  • 7
    • 43349094298 scopus 로고    scopus 로고
    • Identification of sodium chlorideregulated genes in Burkholderia cenocepacia
    • Bhatt, S. & Weingart, C. L. (2008). Identification of sodium chlorideregulated genes in Burkholderia cenocepacia. Curr Microbiol 56, 418-422.
    • (2008) Curr Microbiol , vol.56 , pp. 418-422
    • Bhatt, S.1    Weingart, C.L.2
  • 9
    • 0036259701 scopus 로고    scopus 로고
    • A lytic transglycosylase of Neisseria gonorrhoeae is involved in peptidoglycan-derived cytotoxin production
    • Cloud, K. A. & Dillard, J. P. (2002). A lytic transglycosylase of Neisseria gonorrhoeae is involved in peptidoglycan-derived cytotoxin production. Infect Immun 70, 2752-2757.
    • (2002) Infect Immun , vol.70 , pp. 2752-2757
    • Cloud, K.A.1    Dillard, J.P.2
  • 10
    • 8544278913 scopus 로고    scopus 로고
    • Recovery of Burkholderia cenocepacia strain PHDC from cystic fibrosis patients in Europe
    • DOI 10.1136/thx.2003.019810
    • Coenye, T., Spilker, T., Van Schoor, A., LiPuma, J. J. & Vandamme, P. (2004). Recovery of Burkholderia cenocepacia strain PHDC from cystic fibrosis patients in Europe. Thorax 59, 952-954. (Pubitemid 39490779)
    • (2004) Thorax , vol.59 , Issue.11 , pp. 952-954
    • Coenye, T.1    Spilker, T.2    Van Schoor, A.3    Lipuma, J.J.4    Vandamme, P.5
  • 11
    • 0028066160 scopus 로고
    • Genetic exchange and evolutionary divergence in prokaryotes
    • Cohan, F. M. (1994). Genetic exchange and evolutionary divergence in prokaryotes. Trends Ecol Evol 9, 175-180.
    • (1994) Trends Ecol Evol , vol.9 , pp. 175-180
    • Cohan, F.M.1
  • 13
    • 35848952765 scopus 로고    scopus 로고
    • Protein secretion in gram-negative bacteria via the autotransporter pathway
    • DOI 10.1146/annurev.micro.61.080706.093233
    • Dautin, N. & Bernstein, H. D. (2007). Protein secretion in Gramnegative bacteria via the autotransporter pathway. Annu Rev Microbiol 61, 89-112. (Pubitemid 350058201)
    • (2007) Annual Review of Microbiology , vol.61 , pp. 89-112
    • Dautin, N.1    Bernstein, H.D.2
  • 14
    • 33644766916 scopus 로고    scopus 로고
    • Identification of a domain in Yersinia virulence factor YadA that is crucial for extracellular matrix-specific cell adhesion and uptake
    • DOI 10.1073/pnas.0507749103
    • Heise, T. & Dersch, P. (2006). Identification of a domain in Yersinia virulence factor YadA that is crucial for extracellular matrix-specific cell adhesion and uptake. Proc Natl Acad Sci USA 103, 3375-3380. (Pubitemid 43346477)
    • (2006) Proceedings of the National Academy of Sciences of the United States of America , vol.103 , Issue.9 , pp. 3375-3380
    • Heise, T.1    Dersch, P.2
  • 16
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff, S. & Henikoff, J. G. (1992). Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci USA 89, 10915-10919.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 17
    • 0034669051 scopus 로고    scopus 로고
    • Structure and sequence analysis of Yersinia YadA and Moraxella UspAs reveal a novel class of adhesins
    • Hoiczyk, E., Roggenkamp, A., Reichenbecher, M., Lupas, A. & Heesemann, J. (2000). Structure and sequence analysis of Yersinia YadA and Moraxella UspAs reveal a novel class of adhesins. EMBO J 19, 5989-5999.
    • (2000) EMBO J , vol.19 , pp. 5989-5999
    • Hoiczyk, E.1    Roggenkamp, A.2    Reichenbecher, M.3    Lupas, A.4    Heesemann, J.5
  • 19
    • 0030756397 scopus 로고    scopus 로고
    • Priming of neutrophil respiratory burst activity by lipopolysaccharide from Burkholderia cepacia
    • Hughes, J. E., Stewart, J., Barclay, G. R. & Govan, J. R. (1997). Priming of neutrophil respiratory burst activity by lipopolysaccharide from Burkholderia cepacia. Infect Immun 65, 4281-4287.
    • (1997) Infect Immun , vol.65 , pp. 4281-4287
    • Hughes, J.E.1    Stewart, J.2    Barclay, G.R.3    Govan, J.R.4
  • 20
    • 33747753838 scopus 로고    scopus 로고
    • Model structure of the prototypical non-fimbrial adhesin YadA of Yersinia enterocolitica
    • Koretke, K. K., Szczesny, P., Gruber, M. & Lupas, A. N. (2006). Model structure of the prototypical non-fimbrial adhesin YadA of Yersinia enterocolitica. J Struct Biol 155, 154-161.
    • (2006) J Struct Biol , vol.155 , pp. 154-161
    • Koretke, K.K.1    Szczesny, P.2    Gruber, M.3    Lupas, A.N.4
  • 21
    • 0033954069 scopus 로고    scopus 로고
    • The UspA1 protein and a second type of UspA2 protein mediate adherence of Moraxella catarrhalis to human epithelial cells in vitro
    • DOI 10.1128/JB.182.5.1364-1373.2000
    • Lafontaine, E. R., Cope, L. D., Aebi, C., Latimer, J. L., McCracken, G. H., Jr & Hansen, E. J. (2000). The UspA1 protein and a second type of UspA2 protein mediate adherence of Moraxella catarrhalis to human epithelial cells in vitro. J Bacteriol 182, 1364-1373. (Pubitemid 30104416)
    • (2000) Journal of Bacteriology , vol.182 , Issue.5 , pp. 1364-1373
    • Lafontaine, E.R.1    Cope, L.D.2    Aebi, C.3    Latimer, J.L.4    McCracken Jr., G.H.5    Hansen, E.J.6
  • 22
    • 33744728321 scopus 로고    scopus 로고
    • Trimeric autotransporter adhesins: Variable structure, common function
    • DOI 10.1016/j.tim.2006.04.005, PII S0966842X06000977
    • Linke, D., Riess, T., Autenrieth, I. B., Lupas, A. & Kempf, V. A. (2006). Trimeric autotransporter adhesins: variable structure, common function. Trends Microbiol 14, 264-270. (Pubitemid 43825731)
    • (2006) Trends in Microbiology , vol.14 , Issue.6 , pp. 264-270
    • Linke, D.1    Riess, T.2    Autenrieth, I.B.3    Lupas, A.4    Kempf, V.A.J.5
  • 24
    • 0030956327 scopus 로고    scopus 로고
    • Identification and characterization of a novel DNA marker associated with epidemic Burkholderia cepacia strains recovered from patients with cystic fibrosis
    • Mahenthiralingam, E., Simpson, D. A. & Speert, D. P. (1997). Identification and characterization of a novel DNA marker associated with epidemic Burkholderia cepada strains recovered from patients with cystic fibrosis. J Clin Microbiol 35, 808-816. (Pubitemid 27146516)
    • (1997) Journal of Clinical Microbiology , vol.35 , Issue.4 , pp. 808-816
    • Mahenthiralingam, E.1    Simpson, D.A.2    Speert, D.P.3
  • 26
    • 13444251656 scopus 로고    scopus 로고
    • The multifarious, multireplicon Burkholderia cepacia complex
    • DOI 10.1038/nrmicro1085
    • Mahenthiralingam, E., Urban, T. A. & Goldberg, J. B. (2005). The multifarious, multireplicon Burkholderia cepacia complex. Nat Rev Microbiol 3, 144-156. (Pubitemid 40207595)
    • (2005) Nature Reviews Microbiology , vol.3 , Issue.2 , pp. 144-156
    • Mahenthiralingam, E.1    Urban, T.A.2    Goldberg, J.B.3
  • 27
    • 0344845053 scopus 로고    scopus 로고
    • Identification and physical organization of the gene cluster involved in the biosynthesis of Burkholderia cepacia complex exopolysaccharide
    • Moreira, L. M., Videira, P. A., Sousa, S. A., Leitão, J. H., Cunha, M. V. & Sá-Correia, I. (2003). Identification and physical organization of the gene cluster involved in the biosynthesis of Burkholderia cepacia complex exopolysaccharide. Biochem Biophys Res Commun 312, 323-333.
    • (2003) Biochem Biophys Res Commun , vol.312 , pp. 323-333
    • Moreira, L.M.1    Videira, P.A.2    Sousa, S.A.3    Leitão, J.H.4    Cunha, M.V.5    Sá-Correia, I.6
  • 29
    • 0036567258 scopus 로고    scopus 로고
    • Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution
    • Rocha, E. P. & Blanchard, A. (2002). Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution. Nucleic Acids Res 30, 2031-2042.
    • (2002) Nucleic Acids Res , vol.30 , pp. 2031-2042
    • Rocha, E.P.1    Blanchard, A.2
  • 30
    • 0033397546 scopus 로고    scopus 로고
    • Functional and evolutionary roles of long repeats in prokaryotes
    • DOI 10.1016/S0923-2508(99)00120-5
    • Rocha, E. P., Danchin, A. & Viarl, A. (1999). Functional and evolutionary roles of long repeats in prokaryotes. Res Microbiol 150, 725-733. (Pubitemid 30035892)
    • (1999) Research in Microbiology , vol.150 , Issue.9-10 , pp. 725-733
    • Rocha, E.P.C.1    Danchin, A.2    Viari, A.3
  • 32
    • 0038028636 scopus 로고    scopus 로고
    • Identification and molecular analysis of cable pilus biosynthesis genes in Burkholderia cepacia
    • Sajjan, U. S., Xie, H., Lefebre, M. D., Valvano, M. A. & Forstner, J. F. (2003). Identification and molecular analysis of cable pilus biosynthesis genes in Burkholderia cepacia. Microbiology 149, 961-971.
    • (2003) Microbiology , vol.149 , pp. 961-971
    • Sajjan, U.S.1    Xie, H.2    Lefebre, M.D.3    Valvano, M.A.4    Forstner, J.F.5
  • 33
    • 0000361948 scopus 로고    scopus 로고
    • Repeat-associated phase variable genes in the complete genome sequence of Neisseria meningitidis strain MC58
    • DOI 10.1046/j.1365-2958.2000.02000.x
    • Saunders, N. J., Jeffries, A. C., Peden, J. F., Hood, D. W., Tettelin, H., Rappuoli, R. & Moxon, E. R. (2000). Repeat-associated phase variable genes in the complete genome sequence of Neisseria meningitidis strain MC58. Mol Microbiol 37, 207-215. (Pubitemid 30479369)
    • (2000) Molecular Microbiology , vol.37 , Issue.1 , pp. 207-215
    • Saunders, N.J.1    Jeffries, A.C.2    Peden, J.F.3    Hood, D.W.4    Tettelin, H.5    Rappuoli, R.6    Moxon, E.R.7
  • 34
    • 0033002322 scopus 로고    scopus 로고
    • Differentiation of Burkholderia species by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene and application to cystic fibrosis isolates
    • Segonds, C., Heulin, T., Marty, N. & Chabanon, G. (1999). Differentiation of Burkholderia species by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene and application to cystic fibrosis isolates. J Clin Microbiol 37, 2201-2208. (Pubitemid 29277780)
    • (1999) Journal of Clinical Microbiology , vol.37 , Issue.7 , pp. 2201-2208
    • Seconds, C.1    Heulin, T.2    Marty, N.3    Chabanon, G.4
  • 35
    • 0348143171 scopus 로고    scopus 로고
    • The CepIR quorum-sensing system contributes to the virulence of Burkholderia cenocepacia respiratory infections
    • Sokol, P. A., Sajjan, U., Visser, M. B., Gingues, S., Forstner, J. & Kooi, C. (2003). The CepIR quorum-sensing system contributes to the virulence of Burkholderia cenocepacia respiratory infections. Microbiology 149, 3649-3658. (Pubitemid 38016691)
    • (2003) Microbiology , vol.149 , Issue.12 , pp. 3649-3658
    • Sokol, P.A.1    Sajjan, U.2    Visser, M.B.3    Gingues, S.4    Forstner, J.5    Kooi, C.6
  • 36
    • 43349091607 scopus 로고    scopus 로고
    • Domain annotation of trimeric autotransporter adhesins - DaTAA
    • DOI 10.1093/bioinformatics/btn118
    • Szczesny, P. & Lupas, A. (2008). Domain annotation of trimeric autotransporter adhesins - daTAA. Bioinformatics 24, 1251-1256. (Pubitemid 351659621)
    • (2008) Bioinformatics , vol.24 , Issue.10 , pp. 1251-1256
    • Szczesny, P.1    Lupas, A.2
  • 37
    • 3042554572 scopus 로고    scopus 로고
    • Functional analysis of the Streptococcus gordonii DL1 sialic acid-binding adhesin and its essential role in bacterial binding to platelets
    • DOI 10.1128/IAI.72.7.3876-3882.2004
    • Takahashi, Y., Yajima, A., Cisar, J. O. & Konishi, K. (2004). Functional analysis of the Streptococcus gordonii DL1 sialic acid-binding adhesin and its essential role in bacterial binding to platelets. Infect Immun 72, 3876-3882. (Pubitemid 38821901)
    • (2004) Infection and Immunity , vol.72 , Issue.7 , pp. 3876-3882
    • Takahashi, Y.1    Yajima, A.2    Cisar, J.O.3    Konishi, K.4
  • 38
    • 0027714850 scopus 로고
    • Hydrophobic domains affect the collagen-binding specificity and surface polymerization as well as the virulence potential of the YadA protein of Yersinia enterocolitica
    • Tamm, A., Tarkkanen, A. M., Korhonen, T. K., Kuusela, P., Toivanen, P. & Skurnik, M. (1993). Hydrophobic domains affect the collagenbinding specificity and surface polymerization as well as the virulence potential of the YadA protein of Yersinia enterocolitica. Mol Microbiol 10, 995-1011. (Pubitemid 24040877)
    • (1993) Molecular Microbiology , vol.10 , Issue.5 , pp. 995-1011
    • Tamm, A.1    Tarkkanen, A.-M.2    Korhonen, T.K.3    Kuusela, P.4    Toivanen, P.5    Skurnik, M.6
  • 40
    • 1142298589 scopus 로고    scopus 로고
    • Transcriptional and posttranscriptional control of cable pilus gene expression in Burkholderia cenocepacia
    • Tomich, M. & Mohr, C. D. (2004). Transcriptional and posttranscriptional control of cable pilus gene expression in Burkholderia cenocepacia. J Bacteriol 186, 1009-1020.
    • (2004) J Bacteriol , vol.186 , pp. 1009-1020
    • Tomich, M.1    Mohr, C.D.2
  • 41
    • 0037369874 scopus 로고    scopus 로고
    • Attenuated virulence of a Burkholderia cepacia type III secretion mutant in a murine model of infection
    • DOI 10.1128/IAI.71.3.1405-1415.2003
    • Tomich, M., Griffith, A., Herfst, C. A., Burns, J. L. & Mohr, C. D. (2003). Attenuated virulence of a Burkholderia cepada type III secretion mutant in a murine model of infection. Infect Immun 71, 1405-1415. (Pubitemid 36254327)
    • (2003) Infection and Immunity , vol.71 , Issue.3 , pp. 1405-1415
    • Tomich, M.1    Griffith, A.2    Herfst, C.A.3    Burns, J.L.4    Mohr, C.D.5
  • 42
    • 65649118887 scopus 로고    scopus 로고
    • Strains of Burkholderia cenocepacia genomovar IIIA possessing the cblA gene that are distinct from ET12
    • Turton, J. F., O'Brien, E., Megson, B., Kaufmann, M. E. & Pitt, T. L. (2009). Strains of Burkholderia cenocepacia genomovar IIIA possessing the cblA gene that are distinct from ET12. Diagn Microbiol Infect Dis 64, 94-97.
    • (2009) Diagn Microbiol Infect Dis , vol.64 , pp. 94-97
    • Turton, J.F.1    O'Brien, E.2    Megson, B.3    Kaufmann, M.E.4    Pitt, T.L.5
  • 46
    • 0038785886 scopus 로고    scopus 로고
    • Lipopolysaccharide of Burkholderia cepacia complex
    • Vinion-Dubiel, A. D. & Goldberg, J. B. (2003). Lipopolysaccharide of Burkholderia cepacia complex. J Endotoxin Res 9, 201-213.
    • (2003) J Endotoxin Res , vol.9 , pp. 201-213
    • Vinion-Dubiel, A.D.1    Goldberg, J.B.2
  • 47
    • 2142643700 scopus 로고    scopus 로고
    • Importance of the Ornibactin and Pyochelin Siderophore Transport Systems in Burkholderia cenocepacia Lung Infections
    • DOI 10.1128/IAI.72.5.2850-2857.2004
    • Visser, M. B., Majumdar, S., Hani, E. & Sokol, P. A. (2004). Importance of the ornibactin and pyochelin siderophore transport systems in Burkholderia cenocepacia lung infections. Infect Immun 72, 2850-2857. (Pubitemid 38542414)
    • (2004) Infection and Immunity , vol.72 , Issue.5 , pp. 2850-2857
    • Visser, M.B.1    Majumdar, S.2    Hani, E.3    Sokol, P.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.