Isolation and functional characterization of Lycopene β-cyclase (CYC-B) promoter from Solanum habrochaites

BMC Plant Biology

Volumn 10, Issue , 2010, Pages

  Dalal, Monika ^a,b   Chinnusamy, Viswanathan ^c   Bansal, Kailash C ^a  

^a NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY   (India)

^b ICAR INDIAN INSTITUTE OF MILLETS RESEARCH   (India)

^c INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AGROBACTERIUM; LYCOPERSICON ESCULENTUM; LYCOPERSICON HIRSUTUM; RHIZOBIUM; SOLANUM;

BETA GLUCURONIDASE; ISOMERASE; LYCOPENE CYCLASE ISOMERASE; LYCOPENE CYCLASE-ISOMERASE;

ARTICLE; ENZYME ASSAY; ENZYMOLOGY; FLUOROMETRY; FRUIT; GENE DELETION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE VECTOR; GENETIC TRANSFORMATION; GENETICS; IMMUNOHISTOCHEMISTRY; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PROMOTER REGION; REPORTER GENE; SOLANUM; TOMATO; TRANSGENIC PLANT;

BASE SEQUENCE; BLOTTING, NORTHERN; CLONING, MOLECULAR; ENZYME ASSAYS; FLUOROMETRY; FRUIT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, REPORTER; GENETIC VECTORS; GLUCURONIDASE; IMMUNOHISTOCHEMISTRY; INTRAMOLECULAR LYASES; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; PLANTS, GENETICALLY MODIFIED; PROMOTER REGIONS, GENETIC; SEQUENCE DELETION; SOLANUM; TRANSFORMATION, GENETIC;

EID: 77950669241     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-10-61     Document Type: Article

References (41)

1. Bramley PM. Regulation of carotenoid formation during tomato fruit ripening and development. Journal of Experimental Botany 2002, 53:2107-2113. 10.1093/jxb/erf059, 12324534.
2. Hirschberg J. Carotenoid biosynthesis in flowering plants. Current Opinion in Plant Biology 2001, 4:210-218. 10.1016/S1369-5266(00)00163-1, 11312131.
3. Zar BA, Zacaryas L, Rodrigo MJ. Molecular and functional characterization of a novel chromoplast-specific lycopene β-cyclase from Citrus and its relation to lycopene accumulation. Journal of Experimental Botany 2009, 60(6):1783-1797. 10.1093/jxb/erp048, 2671624, 19325166.
4. Charles A-D, McGhie T, Wibisono R, Montefiori M, Hellens RP, Allan AC. The kiwifruit lycopene beta-cyclase plays a significant role in carotenoid accumulation in fruit. Journal of Experimental Botany 2009, 60(13):3765-3779. 10.1093/jxb/erp218, 2736891, 19574250.
5. Ha SH, Kim JB, Park JS, Lee SW, Cho KJ. A comparison of the carotenoid accumulation in Capsicum varieties that show different ripening colours: deletion of the capsanthin-capsorubin synthase gene is not a prerequisite for the formation of a yellow pepper. Journal of Experimental Botany 2007, 58:3135-3144. 10.1093/jxb/erm132, 17728301.
6. Giuliano G, Bartley GE, Scolnik P. Regulation of carotenoid biosynthesis during tomato development. Plant Cell 1993, 5:379-387. 10.1105/tpc.5.4.379, 160278, 8485401.
7. Fraser PD, Truesdale MR, Bird CR, Schuch W, Bramley PM. Carotenoid biosynthesis during tomato fruit development. Plant Physiology 1994, 105:405-413. 159369, 12232210.
8. Corona V, Aracci B, Kosturkova G, Bartley GE, Pitto L, Giorgetti L, Scolnik PA, Giuliano G. Regulation of a carotenoid biosynthesis gene promoter during plant development. Plant Journal 1996, 9:505-512. 10.1046/j.1365-313X.1996.09040505.x, 8624513.
9. Alba R, Payton P, Fei Z, McQuinn R, Debbie P, Martin GB, Tanksley SD, Giovannoni JJ. Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development. Plant Cell 2005, 17:2954-2965. 10.1105/tpc.105.036053, 1276022, 16243903.
10. Pecker I, Gabbay R, Cunningham FX, Hirschberg J. Cloning and characterization of the cDNA for lycopene β-cyclase from tomato reveals decrease in its expression during fruit ripening. Plant Molecular Biology 1996, 30:807-819. 10.1007/BF00019013, 8624411.
11. Ronen G, Cohen M, Zamir D, Hirschberg J. Regulation of carotenoid biosynthesis during tomato fruit development: expression of the gene for lycopene epsilon-cyclase is down-regulated during ripening and is elevated in the mutant Delta. Plant Journal 1999, 17:341-351. 10.1046/j.1365-313X.1999.00381.x, 10205893.
12. Ronen G, Carmel-Goren L, Zamir D, Hirschberg J. An alternative pathway to β-carotene formation in plant chromoplasts discovered by map-based cloning of Beta and old-gold color mutations in tomato. Proceedings of National Academy of Sciences USA 2000, 97:11102-11107.
13. Aluru M, Xu Y, Guo R, Wang Z, Li S, White W, Wang K, Rodermel S. Generation of transgenic maize with enhanced provitamin A content. Journal of Experimental Botany 2008, 59(13):3551-3562. 10.1093/jxb/ern212, 2561147, 18723758.
14. Ducreux LJM, Morris WL, Hedley PE, Shepherd T, Davies HV, Millam S, Taylor MA. Metabolic engineering of high carotenoid potato tubers containing enhanced levels of beta-carotene and lutein. Journal of Experimental Botany 2005, 56:81-89.
15. Paine JA, Shipton CA, Chaggar S, Howells RM, Kennedy MJ, Vernon G, Wright SY, Hinchliffe E, Adams JL, Silverstone AL, Drake R. Improving the nutritional value of golden rice through increased pro-vitamin A content. Nature Biotechnology 2005, 23:482-487. 10.1038/nbt1082, 15793573.
16. Ye X, Al-Babili S, Kloti A, Zhang J, Lucca P, Beyer P, Potrykus I. Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm. Science 2000, 287:303-305. 10.1126/science.287.5451.303, 10634784.
17. Shewmaker CK, Sheehy JA, Daley M, Colburn S, Ke DY. Seed-specific over expression of phytoene synthase: increase in carotenoids and other metabolic effects. Plant Journal 1999, 20:401-412. 10.1046/j.1365-313x.1999.00611.x, 10607293.
18. Davuluri GR, van Tuinen A, Fraser PD, Manfredonia A, Newman R, Burgess D, Brummell DA, King SR, Palys J, Uhlig J, Bramley PM, Pennings HM, Bowler C. Fruit specific RNAi-mediated suppression of DET1 enhances carotenoid and flavanoid content in tomatoes. Nature Biotechnology 2005, 23:890-895. 10.1038/nbt1108, 15951803.
19. Dharmapuri S, Rosati C, Pallara P, Aquilani R, Bouvier F, Camara B, Giuliano G. Metabolic engineering of xanthophyll content in tomato fruits. FEBS Letters 2002, 519:30-34. 10.1016/S0014-5793(02)02699-6, 12023013.
20. Romer S, Fraser PD, Kiano JW, Shipton CA, Misawa N, Schuch W, Bramley PM. Elevation of the provitamin A content of transgenic tomato plants. Nature Biotechnology 2000, 18:666-669. 10.1038/76523, 10835607.
21. Rosati C, Aquilani R, Dharmapuri S, Pallara P, Marusic C, Tavazza R, Bouvier F, Camara B, Giuliano G. Metabolic engineering of beta-carotene and lycopene content in tomato fruit. Plant Journal 2000, 24:413-419. 10.1046/j.1365-313x.2000.00880.x, 11069713.
22. Davuluri GR, Van Tuinen A, Mustilli AC, Manfredonia A, Newman R, Burgess D, Brummell DA, King SR, Palys J, Uhlig J, Pennings HM, Bowler C. Manipulation of DET1 expression in tomato results in photomorphogenic phenotypes caused by post-transcriptional gene silencing. Plant Journal 2004, 40:344-354. 10.1111/j.1365-313X.2004.02218.x, 15469492.
23. Pecker I, Chamovitz D, Linden H, Sandmann G, Hirschberg J. A single polypeptide catalyzing the conversion of phytoene to β-carotene is transcriptionally regulated during tomato fruit ripening. Proceedings of National Academy of Sciences USA 1992, 89:4962-4966.
24. Galpaz N, Ronen G, Khalfa Z, Zamir D, Hirschberga J. A chromoplast-specific carotenoid biosynthesis pathway is revealed by cloning of the tomato white-flower locus. Plant Cell 2006, 18:1947-1960. 10.1105/tpc.105.039966, 1533990, 16816137.
25. Seo M, Koshiba T. Complex regulation of ABA biosynthesis in plants. Trends in Plant Science 2002, 7:41-48. 10.1016/S1360-1385(01)02187-2, 11804826.
26. Giuliano G, Tavazza R, Diretto G, Beyer P, Taylor MA. Metabolic engineering of carotenoid biosynthesis in plants. Trends in Biotechnology 2008, 26:139-145. 10.1016/j.tibtech.2007.12.003, 18222560.
27. Fray RG, Wallace A, Fraser PD, Valero D, Hedden P, Bramley PM, Grierson D. Constitutive expression of a fruit phytoene synthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellins pathway. Plant Journal 1995, 8:693-701.
28. Galpaz N, Wang Q, Menda N, Zamir D, Hirschberg J. Abscisic acid deficiency in the tomato mutant high-pigment 3 leading to increased plastid number and higher fruit lycopene content. Plant Journal 2008, 53:717-730. 10.1111/j.1365-313X.2007.03362.x, 17988221.
29. Bang H, Kim S, Leskovar D, King S. Development of a codominant CAPS marker for allelic selection between canary yellow and red watermelon based on SNP in lycopene β-cyclase (LCYB) gene. Molecular Breeding 2000, 20:63-72.
30. Reese MG. Application of a time - delay neutral network to promote annotation in the Drosophila melanogaster genome. Computer chemistry 2001, 26(1):51-56.
31. Higo K, Ugawa Y, Iwamoto M, Korenaga T. Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Research 1999, 27:297-300. 10.1093/nar/27.1.297, 148163, 9847208.
32. Lescot M, Déhais P, Moreau Y, De Moor B, Rouzé P, Rombauts S. PlantCARE: a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res Database issue 2002, 30(1):325-327.
33. Welsch R, Maass D, Voegel T, DellaPenna D, Beyer P. Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves. Plant Physiology 2007, 145:1073-1085. 10.1104/pp.107.104828, 2048778, 17873090.
34. Welsch R, Medina J, Giuliano G, Beyer P, von Lintig J. Structural and functional characterization of the phytoene synthase promoter from Arabidopsis thaliana. Planta 2003, 216:523-534.
35. Villain P, Mache R, Zhou D-X. The mechanism of GT element-mediated cell type-specific transcriptional control. Journal of Biological Chemistry 1996, 271:32593-32598. 10.1074/jbc.271.51.32593, 8955086.
36. Gourrierec JL, Li Y-F, Zhou D-X. Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant Journal 1999, 18:663-668. 10.1046/j.1365-313x.1999.00482.x, 10417717.
37. Misra RN, Singla-Pareek SL, Nair S, Sopory SK, Reddy MK. Directional genome walking using PCR. BioTechniques 2002, 33:830-834.
38. Doyle JJ, Doyle JL. Isolation of plant DNA from fresh tissue. Focus 1990, 12:13-15.
39. Orzaez D, Mirabel S, Wieland WH, Granell A. Agroinjection of tomato fruits. A tool for rapid functional analysis of transgenes directly in fruit. Plant Physiology 2006, 140:3-11. 10.1104/pp.105.068221, 1326026, 16403736.
40. Jefferson RA, Kavanagh TA, Bevan MW. GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO Journal 1987, 6:3901-3907. 553867, 3327686.
41. Cortina C, Culianez-Macia FA. Tomato transformation and transgenic plant production. Plant Cell, Tissue and Organ Culture 2004, 76:269-275.