FISH mapping of microsatellite loci from drosophila subobscura and its comparison to related species

Chromosome Research

Volumn 18, Issue 2, 2010, Pages 213-226

  Santos, Josiane ^a,b   Serra, Lluis ^a   Solé, Elisabet ^a   Pascual, Marta ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

^b UNIVERSITY OF LISBON   (Portugal)

Author keywords

Cytogenetic map; Drosophila; Fluorescent in situ; Genome comparison; Genome rearrangement; Hybridization; Microsatellite loci; Repetitive dna

Indexed keywords

ARTICLE; CHROMOSOME; CONTROLLED STUDY; CYTOGENETICS; DROSOPHILA; DROSOPHILA MELANOGASTER; DROSOPHILA PSEUDOOBSCURA; DROSOPHILA SUBOBSCURA; FLUORESCENCE IN SITU HYBRIDIZATION; GENE LOCUS; GENE MAPPING; GENE REARRANGEMENT; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC RECOMBINATION; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN MODIFICATION; SEX CHROMOSOME; SPECIES COMPARISON;

ANIMALS; CHROMOSOME MAPPING; DROSOPHILA; DROSOPHILA MELANOGASTER; IN SITU HYBRIDIZATION, FLUORESCENCE; MICROSATELLITE REPEATS;

DROSOPHILA MELANOGASTER; DROSOPHILA PSEUDOOBSCURA; DROSOPHILA SUBOBSCURA;

EID: 77950458150     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-010-9112-4     Document Type: Article

References (59)

1. Adams MA, Celniker SE, Holt RA et al (2000) The genome sequence of Drosophila melanogaster. Science 287:2185-2195
2. Aquadro CE, Begun DJ, Kindahl EC (1994) Selection, recombination, and DNA polymorphism in Drosophila. In: Golding B (ed) Non-neutral evolution: theories and molecular data. Chapman and Hall, New York, pp 46-55
3. Ayala FJ, Serra L, Prevosti A (1989) A grand experiment in evolution: the subobscura colonization of the Americas. Genome 31:246-255
4. Bachtrog D, Weiss S, Zangerl B, Brem G, Schlötterer C (1999) Distribution of dinucleotide micro satellites in the Drosophila melanogaster genome. Mol Biol Evol 16:602-610
5. Balanyà J, Oller JM, Huey RB, Gilchrist GW, Serra L (2006) Global genetic change tracks global climate warming in Drosophila subobscura. Science 313:1773-1775
6. Bauer V, Aquadro CF (1997) Rates of DNA sequence evolution are not sex-biased in Drosophila melanogaster and D. simulans. Mol Biol Evol 14:1252-1257 (Pubitemid 27523138)
7. Belyaeva ES, Andreyeva EN, Belyakin SN, Volkova EI, Zhimulev IF (2008) Intercalary heterochromatin in polytene chromosomes of Drosophila melanogaster. Chramosoma 117:411-418
8. Bhutkar A, Schaeffer SW, Russo SM, Xu M, Smith TF, Gelbart WM (2008) Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes. Genetics 179:1657-1680
9. Carreras C, Pascual M, Cardona L et al (2006) The genetic structure of the loggerhead sea turtle (Caretta carettd) in the Mediterranean as revealed by nuclear and mitochondrial DNA and its conservation implications. Conserv Genet. 8:761-775
10. Carreras-Carbonell J, Macpherson E, Pascual M (2004) Isolation and characterization of microsatellite loci in Tripterygion delaisi. Mol Ecol Notes 4:438-439
11. Carreras-Carbonell J, Macpherson E, Pascual M (2005) Rapid radiation and cryptic speciation in Mediterranean triplefin blennies (Pisces: Tripterygiidae) combining multiple genes. Mol Phylogenet Evol 37:751-761 (Pubitemid 41597787)
12. Carreras-Carbonell J, Macpherson E, Pascual M (2008) Utility of pairwise mtDNA genetic distances for predicting crossspecies amplification and polymorphism success in fishes. Cons Genet 9:181-190
13. Chang SB, Yang T-J, Datema E et al (2008) FISH mapping and molecular organization of the major repetitive sequences of tomato. Chromosome Res 16:919-933
14. Cuadrado A, Jouve N (2007a) The nonrandom distribution of long clusters of all possible classes of trinucleotide repeats in bailey chromosomes. Chromosome Res 15:711-720 (Pubitemid 47415796)
15. Cuadrado A, Jouve N (2007b) Similarities in the chromosomal distribution of AG and AC repeats within and between Drosophila, human and bailey chromosomes. Cytogenet Genome Res 119:91-99
16. Di Meo GP, Perucatti A, Floriot S et al (2008) An extended river buffalo (Bubalus bubalis, 2w=50) cytogenetic map: assignment of 68 autosomal loci by FISH-mapping and R-banding and comparison with human chromosomes. Chromosome Res 16:827-837
17. Dobzhansky T (1950) Genetics of natural populations. XIX. Origin of heterosis through natural selection in populations of Drosophila pseudoobscura. Genetics 35:288-302
18. Drosophila 12 Genomes Consortium (2007) Evolution of genes and genomes on the Drosophila phytogeny. Nature 450:203-218
19. Ellis JR, Burke JM (2007) EST-SSRs as a resource for population genetic analyses. Heredity 99:125-132
20. González J, Ranz JM, Ruiz A (2002) Chromosomal elements evolve at different rates in Drosophila genome. Genetics 161:1137-1154
21. Gurbich TA, Bachtrog D (2008) Gene content evolution on the X chromosome. Curr Opin Genet Dev 18:493-498
22. Kashi Y, Soller M (1999) Functional roles of micro satellites and minisatellites. In: Goldstein DB, Schlotterer C (eds) Microsatellites: evolution and application. Oxford University Press, Oxford, pp 10-23
23. Katti MV, Ranjekar PK, Gupta VS (2001) Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 18:1161-1167
24. Kauer M, Zangerl B, Dieringer D, Schlötterer C (2002) Chromosomal patterns of microsatellite variability contrast sharply in African and Non-African populations of Drosophila melanogaster. Genetics 160:247-256 (Pubitemid 34118286)
25. Krimbas CB (1993) Drosophila subobscura: biology, genetics and inversion polymorphism.
26. Verlag Dr Kovac, Hamburg Krimbas CB, Loukas M (1980) The inversion polymorphism of Drosophila subobscura. Evol Biol 12:163-234
27. Kunze-Muhl E, Müller E (195 8) Weitere Untersuchungen über die chromosomale Struktur und die natürlichen Strukturtypen von Drosophila subobscura Coll. Chromo soma 9:559-570
28. Lenartowski R, Goc A (2002) Tissue-specific association of the human tyrosine hydroxylase gene with the nuclear matrix. Neurosci Lett 330:151-154 (Pubitemid 35257887)
29. Li Y-C, Korol AB, Fahima T, Beiles A, Nevo E (2002) Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol 11:2453-2465 (Pubitemid 35436668)
30. Li Y-C, Korol AB, Fahima T, Nevo E (2004) Microsatellites within genes: structure, function, and evolution. Mol Biol Evol 21:991-1007 (Pubitemid 38658207)
31. Lim JK (1993) In situ hybridization with biotinylated DNA. Dros Inf Serv 72:73-77
32. Lohe AR, Hilliker AJ, Roberts PA (1993) Mapping simple repeated DNA sequences in heterochromatin of Drosophila melanogaster. Genetics 134:1149-1174
33. Lowenhaupt K, Rich A, Pardue ML (1989) Nonrandom distribution of long mono- and dinucleotide repeats in Drosophila chromosomes: correlations with dosage compensation, heterochromatin, and recombination. Mol Cell Biol 9:1173-1182
34. Muller HJ (1940) Bearings of the 'Drosophila' work on systematics. In: Huxley J (ed) The new systematics. Clarendon, Oxford, pp 185-268
35. Papaceit M, Aguadé M, Segarra C (2006) Chromosomal evolution of elements B and C in the Sophophora subgenus of Drosophila: evolutionary rate and polymorphism. Evolution 60:768-781
36. Pardue ML, Lowenhaupt K, Rich. A, Nordheiml A (1987) (dC-dA)n.(dG-d.T)n sequences have evolutionarily conserved chromosomal locations in Drosophila with implications for roles in chromosome structure and function. EMBO J 6:1781-1789
37. Pascual M, Schug MD, Aquadro CF (2000) High density of long dinucleotide micro satellites in Drosophila subobscura. Mol Biol Evol 17:1259-1267
38. Pascual M, Aquadro CF, Soto V, Serra L (2001) Microsatellite variation in colonizing and palearctic populations of Drosophila subobscura. Mol Biol Evol 18:731-740
39. Pascual M, Chapuis MP, Mestres F et al (2007) Introduction history of D. subobscura in the New World: a microsatellite-based survey using ABC methods. Mol Ecol 16:3069-3083
40. Pimpinelli S, Bonaccorsi S, Fanti L, Gatti M (2000) Preparation and analysis of Drosophila mitotic chromosomes. In: Sullivan W, Ashburner M, Hawley RS (eds) Drosophila protocols. Cold Spring Harbor Laboratory Press, New York, pp 3-23
41. Prevosti A, Ribo G, Serra L et al (1988) Colonization of America by Drosophila subobscura: experiment in natural populations that supports the adaptive role of chromosomal inversion polymorphism Proc Natl Acad Sci USA 85:5597-5600
42. Primmer CR, Painter JN, Koskinen MT, Palo JU, Merilä J (2005) Factors affecting avian, cross-species microsatellite amplification. J Avian Biol 36:348-360
43. Ramos-Onsins S, Segarra C, Rozas J, Aguadé M (1998) Molecular and chromosomal phytogeny in the obscura group of Drosophila inferred from sequences of the rp49 gene region. Mol Phylogenet Evol 9:33-41
44. Reiland J, Hodge S, Noor MAF (2002) Strong founder effect in Drosophila pseudoobscura colonizing New Zealand from North America. J Hered 93:415-420
45. Richards S, Liu. Y, Bettencourt BR et al (2005) Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene and cfa-element evolution. Genome Res 15:1-18
46. Rico C, Rico I, Hewitt G (1996) 470 million years of conservation of microsatellite loci among fish species. Proc R Soc Lond 263:549-557 (Pubitemid 26169436)
47. Riddle NC, Elgin SCR (2006) The dot chromosome of Drosophila: Insights into chromatin states and their change over evolutionary time. Chromosome Res 14:405-416
48. Saraollow PB, Gouin N, Miethke P et al (2007) A micro satellitebased, physically anchored linkage map for the gray, shorttailed Opossum. (Monodelphis domestica). Chromosome Res 15:269-281
49. Schaeffer SW, Bhutkar A, McAllister BF et al (2008) Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps. Genetics 179:1601-1655
50. Schlötterer C, Tautz D (1992) Slippage synthesis of simple sequence DNA. Nucleic Acids Res 20:211-215
51. Segarra C, Aguadé M! (1992) Molecular organization of the X chromosome in different species of the obscura group of Drosophila. Genetics 130:513-521
52. Segarra C, Ribó G, Aguadé M (1996) Differentiation of Muller's chromosomal elements D and E in the obscura group of Drosophila. Genetics 144:139-146 (Pubitemid 26291924)
53. Simões P, Pascual M, Santos J, Rose MR, Matos M (2008) Evolutionary dynamics of molecular markers during local adaptation: a case study in Drosophila subobscura. BMC Evol Biol 8:66
54. Singh ND, Larracuente AM, Clark AG (2008) Contrasting the efficacy of selection on the X and autosomes in Drosophila. Mol Biol Evol 25:454-467
55. Slawson EE, Shaffer CD, Malone CD et al (2006) Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochramatic domains. Genome Biol 7:R15
56. Thornton K, Bachtrog D, Andolfatto P (2006) X chromosomes and autosomes evolve at similar rates in Drosophila: no evidence for faster-X protein evolution. Genome Res 16:498-504
57. Throckmorton LH (1975) The phytogeny, ecology and geography of Drosophila. In: King RC (ed) Handbook of genetics, vol 3. Plenum, New York, pp 421-469
58. Vicoso B, Haddrill PR, Charlesworth R (2008) A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila. Genet Res 90:421-431
59. Wilder JA, Diaz T, O'neill RJW, Kenney J, Hollocher H (2002) Characterization and isolation of novel microsatellites from the Drosophila dunni subgroup. Genet Res 80:177-185