Introduction history of Drosophila subobscura in the New World: A microsatellite-based survey using ABC methods

Molecular Ecology

Volumn 16, Issue 15, 2007, Pages 3069-3083

  Pascual, M ^a   Chapuis, M P ^b   Mestres, F ^a   Balanya J ^a   Huey, R B ^c   Gilchrist, G W ^d   Serra, L ^a   Estoup, A ^b  

^a UNIVERSITY OF BARCELONA   (Spain)

^b MONTPELLIER SUPAGRO   (France)

^c UNIVERSITY OF WASHINGTON   (United States)

^d Dept of Economics and Thomas Jefferson Program in Public Policy at the College of William and Mary   (United States)

Author keywords

Approximate Bayesian computation; Colonization; Drosophila subobscura; Microsatellites; Number of founders; Sequential invasions

Indexed keywords

MICROSATELLITE DNA;

ANIMAL; ARTICLE; BAYES THEOREM; CLASSIFICATION; DROSOPHILA; EUROPE; EVOLUTION; GENETIC VARIABILITY; GENETICS; GENOTYPE; PHYLOGENY; PHYSIOLOGY; POPULATION MIGRATION;

ANIMAL MIGRATION; ANIMALS; BAYES THEOREM; DROSOPHILA; EUROPE; EVOLUTION; GENOTYPE; MICROSATELLITE REPEATS; PHYLOGENY; VARIATION (GENETICS);

DROSOPHILA SUBOBSCURA;

EID: 34447650844     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2007.03336.x     Document Type: Article

References (58)

1. Avelar T, Rocha Pité MT, Matos M (1987) Variation of some demographic parameters in Drosophila simulans, D. subobscuraand D. phalerata (Diptera, Drosophilidae) throughout the year under semi-natural conditions in Portugal. Acta Oecologica, 8, 347 356.
2. Ayala FJ, Serra L, Prevosti A (1989) A grand experiment in evolution: the Drosophila subobscura colonization of the Americas. Genome, 31, 246 255.
3. Balanyà J, Segarra C, Prevosti A, Serra L (1994) Colonization of America by Drosophila subobscura: the founder event and a rapid expansion. Journal of Heredity, 85, 427 432.
4. Balanyà J, Serra L, Gilchrist GW et al 2003) Evolutionary pace of chromosomal polymorphism in colonizing populations of Drosophila subobscura: an evolutionary time series. Evolution, 57, 1837 1845.
5. Balanyà J, Oller JM, Huey RB, Gilchrist GW, Serra L (2006) Global genetic change tracks global climate warming in Drosophila subobscura. Science, 313, 1773 1775.
6. Beaumont MA (1999) Detecting population expansion and decline using microsatellites. Genetics, 153, 2013 2029.
7. Beaumont MA, Zhang W, Balding DJ (2002) Approximate Bayesian computation in population genetics. Genetics, 162, 2025 2035.
8. Beckenbach AT, Prevosti A (1986) Colonization of North America by the European species, Drosophila subobscuraand D. ambigua. American Midland Naturalist, 115, 10 18.
9. Begon M (1976) Temporal variations in the reproductive condition of Drosophila obscuraFallen and Drosophila subobscuraCollin. Oecologia, 23, 31 47.
10. Brncic D, Budnik M (1980) Colonization of Drosophila subobscuraCollin in Chile. Drosophila Information Service, 55, 20.
11. Brncic D, Budnik M (1987) Some interactions of the colonizing species Drosophila subobscura with local Drosophila fauna in Chile. Genética Ibérica, 39, 249 267.
12. Brncic D, Prevosti A, Budnick M, Monclus M, Ocaña J (1981) Colonization of Drosophila subobscurain Chile. - I. First population and cytogenetic studies. Genetica, 56, 3 9.
13. Caracristi G, Schlötterer C (2003) Genetic differentiation between American and European Drosophila melanogasterpopulations could be attributed to admixture of African alleles. Molecular Biology and Evolution, 20, 792 799.
14. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedure. American Journal of Human Genetics, 19, 233 257.
15. Colautti RI, Manca M, Viljanen M et al 2005) Invasion genetics of the Eurasian spiny waterflea: evidence for bottlenecks and gene flow using microsatellites. Molecular Ecology, 14, 1869 1879.
16. Davies N, Villablanca FX, Roderick GK (1999) Determining the source of individuals: multilocus genotyping in nonequilibrium population genetics. Trends in Ecology and Evolution, 14, 17 21.
17. Estoup A, Clegg SM (2003) Bayesian inferences on the recent island colonization history by the bird Zosterops lateralis lateralis. Molecular Ecology, 12, 657 674.
18. Estoup A, Wilson IJ, Sullivan C, Cornuet JM, Moritz C (2001) Inferring population history from microsatellite and enzyme data in serially introduced cane toads, Bufo marinus. Genetics, 159, 1671 1687.
19. Estoup A, Beaumont M, Sennedot F, Moritz C, Cornuet JM (2004) Genetic analysis of complex demographic scenarios: spatially expanding populations of the cane toad, Bufo marinus. Evolution, 58, 2021 2036.
20. Feldman MW, Bergman A, Pollock DD, Goldstein DB (1997) Microsatellite genetic distances with range constraints: analytic description and problems of estimation. Genetics, 145, 207 216.
21. Frydenberg J, Pertoldi C, Dahlgaard J, Loeschcke V (2002) Genetic variation in original and colonizing Drosophila buzzatipopulations analysed by microsatellite loci isolated with a new PCR screening method. Molecular Ecology, 11, 181 190.
22. Garza JC, Williamson EG (2001) Detection of reduction in population size using data from microsatellite loci. Molecular Ecology, 10, 305 318.
23. Gilchrist GW, Huey RB, Balanyà J, Pascual M, Serra L (2004) A time series of evolution in action: latitudinal cline in wing size in South American Drosophila subobscura. Evolution, 58, 768 780.
24. Grant PR (2002) Founder effects and silvereyes. Proceedings of the National Academy of Sciences USA, 99, 7818 7820.
25. Hamilton G, Currat M, Ray N, Heckel G, Beaumont MA, Excoffier L (2005a) Bayesian estimation of recent migration rates after spatial expansion. Genetics, 170, 409 417.
26. Hamilton G, Stoneking M, Excoffier L (2005b) Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations. Proceedings of the National Academy of Sciences USA, 102, 7476 7480.
27. Hudson RR (1990) Gene genealogies and the coalescent process. In : Oxford Surveys in Evolutionary Biology (eds Futuyama DJ, Antonovics J pp. 1 44. Oxford University Press, Oxford.
28. Huey RB, Gilchrist GW, Carlson ML, Berrigan D, Serra L (2000) Rapid evolution of a geographic cline in size in an introduced fly. Science, 287, 308 309.
29. Ihaka R, Gentleman R (1996) R: a language for data analysis and graphics. Journal of Computational Graphics and Statistics, 5, 299 314.
30. Krimbas CB (1993) Drosophila subobscura. Biology, Genetics and Inversion Polymorphism. Verlag Dr, Kovac, Hamburg.
31. Langella O (2002) Populations. http://bioinformatics.org/project/? group_id=84.
32. Latorre A, Moya A, Ayala FJ (1986) Evolution of mitochondrial DNA in Drosophila subobscura. Proceedings of the National Academy of Sciences USA, 83, 8649 8653.
33. Lee CE (2002) Evolutionary genetics of invasive species. Trends in Ecology and Evolution, 17, 386 391.
34. Lewin B (1994) Genes IV, Ed. 4. John Willey & Sons, New York.
35. Loader CR (1996) Local likelihood density estimation. Annals of Statistics, 24, 1602 1618.
36. Mayr E (1954) Changes of genetic environment and evolution. In : Evolution as a Process (eds Huxley J, Hardy AC, Ford EB), pp. 157 180. Allen & Unwin, London.
37. Mestres F, Serra L (1991) Lethal allelism in Drosophila subobscura: difficulties in the estimation of certain population parameters. Journal of Zoological Systematics and Evolutionary Research, 29, 264 279.
38. Mestres F, Pegueroles G, Prevosti A, Serra L (1990) Colonization of America by Drosophila subobscura: lethal genes and the problem of the O5 inversion. Evolution, 44, 1823 1836.
39. Miller N, Estoup A, Toepfer S et al 2005) Multiple transatlantic introductions of the western corn rootworm. Science, 310, 992.
40. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583 590.
41. Noor MF, Pascual M, Smith KR (2000) Genetic variation in the spread of Drosophila subobscurafrom a nonequilibrium population. Evolution, 54, 696 703.
42. Pascual M, Serra L, Ayala FJ (1998) Interspecific laboratory competition of the recently sympatric species Drosophila subobscuraand Drosophila pseudoobscura. Evolution, 52, 269 274.
43. Pascual M, Schug MD, Aquadro CF (2000) High density of long dinucleotide microsatellites in Drosophila subobscura. Molecular Biology and Evolution, 17, 1259 1267.
44. Pascual M, Aquadro CF, Soto V, Serra L (2001) Microsatellite variation in colonizing and Palearctic populations of Drosophila subobscura. Molecular Biology and Evolution, 18, 731 740.
45. Pascual M, Mestres F, Serra L (2004) Sex-ratio in natural and experimental populations of Drosophila subobscurafrom North America. Journal of Zoological Systematics and Evolutionary Research, 42, 33 37.
46. Petrov DA, Hartl DL (1998) High rate of DNA loss in the Drosophila melanogasterand Drosophila virilisspecies group. Molecular Biology and Evolution, 15, 293 302.
47. Prevosti A, Ribó G, Serra L et al 1988) Colonization of America by Drosophila subobscura: experiment in natural populations that supports the adaptive role of chromosomal-inversion polymorphism. Proceedings of the National Academy of Sciences USA, 85, 5597 5600.
48. Prevosti A, Serra L, Aguadé M et al 1989) Colonization and establishment of the Palearctic species Drosophila subobscurain North and South America. In : Evolutionary Biology of Transient Unstable Populations (ed. Fontdevila A), pp. 114 129. Springer-Verlag, Berlin.
49. Rannala B, Mountain JL (1997) Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Sciences USA, 94, 9197 9201.
50. Roderick G, Navajas M (2003) Genes in new environments: Genetics and evolution in biological control. Nature Reviews Genetics, 4, 889 899.
51. Rouget M, Richardson DM (2003) Inferring process from pattern in plant invasions: a semimechanistic model incorporating propagule pressure and environmental factors. American Naturalist, 162, 713 724.
52. Rozas J, Aguadé M (1991) Using restriction-map analysis to characterize the colonization process of Drosophila subobscuraon the American continent. - I. rp49 region. Molecular Biology and Evolution, 8, 447 457.
53. Schug MD, Hutter CM, Wetterstrand KA, Gaudette MS, Mackay TF, Aquadro CF (1998) The mutation rates of di-, tri- and tetranucleotide repeats in Drosophila melanogaster. Molecular Biology and Evolution, 15, 1751 1760.
54. Stephens M (2003) Inference under the coalescent. In : Handbook of Statistical Genetics (eds Balding DJ, Bishop M, Cannings C), pp. 213 238. Wiley, Chichester.
55. Thornton K, Andolfatto P (2006) Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics, 172, 1607 1619.
56. Tsutsui ND, Suarez AV, Holway DA, Case TJ (2000) Reduced genetic variation and the success of an invasive species. Proceedings of the National Academy of Sciences USA, 97, 5948 5953.
57. Weir BS (1996). Genetic Data Analysis II. Sinauer, Sunderland, Massacusetts.
58. Wright SI, Bi IV, Schroeder SG et al 2005) The effect of artificial selection on the maize genome. Science, 308, 1310 1314.