Comparative dissociation of peptide polyanions by electron impact and photo-induced electron detachment

Journal of the American Society for Mass Spectrometry

Volumn 21, Issue 4, 2010, Pages 670-680

  Larraillet, Vincent ^a   Vorobyev, Aleksey ^b   Brunet, Claire ^a   Lemoine, Jérôme ^a   Tsybin, Yury O ^b   Antoine, Rodolphe ^a   Dugourd, Philippe ^a  

^a UNIVERSITÉ DE LYON   (France)

^b EPFL   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DISSOCIATION; ELECTRONS; MASS SPECTROMETERS; MASS SPECTROMETRY; MATHEMATICAL TRANSFORMATIONS; NEGATIVE IONS; PEPTIDES;

ABUNDANCE DISTRIBUTION; BOND DISSOCIATION; CATION-RADICALS; DEPROTONATED PEPTIDES; ELECTRON DETACHMENT DISSOCIATIONS; ELECTRON DETACHMENTS; ELECTRON PHOTODETACHMENT; HISTIDINE RESIDUES;

ELECTRON EMISSION;

FREE RADICAL; HISTIDINE; POLYANION; TRYPTOPHAN;

ARTICLE; CONTROLLED STUDY; DISSOCIATION; FOURIER TRANSFORM MASS SPECTROMETRY; FRAGMENTATION REACTION; INTERMETHOD COMPARISON; ION TRAP MASS SPECTROMETRY; MASS SPECTROMETRY; PEPTIDE ANALYSIS; PROTEIN CLEAVAGE; SOLVATION;

EID: 77950341203     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2010.01.015     Document Type: Article

References (37)

1. Gevaert K., Vandekerckhove J. Protein Identification Methods in Proteomics. Electrophoresis 2000, 21:1145-1154.
2. Han X.M., Aslanian A., Yates J.R. Mass Spectrometry for Proteomics. Curr. Opin. Chem. Biol. 2008, 12:483-490.
3. Yates J.R. Mass Spectrometry and the Age of the Proteome. J. Mass Spectrom. 1998, 33:1-19.
4. Heck A.J.R., van den Heuvel R.H.H. Investigation of Intact Protein Complexes by Mass Spectrometry. Mass Spectrom. Rev. 2004, 23:368-389.
5. Cooper H.J., Hakansson K., Marshall A.G. The Role of Electron Capture Dissociation in Biomolecular Analysis. Mass Spectrom. Rev. 2005, 24:201-222.
6. Zubarev R.A. Reactions of Polypeptide Ions with Electrons in the Gas Phase. Mass Spectrom. Rev. 2003, 22:57-77.
7. Laskin J., Futrell J.H. Activation of Large Ions in FT-ICR Mass Spectrometry. Mass Spectrom. Rev. 2005, 24:135-167.
8. Wells J.M., McLuckey S.A. Biological Mass Spectrometry 2005, Vol. CDII:148-185. Elsevier, San Diego.
9. Dongre A.R., Jones J.L., Somogyi A., Wysocki V.H. Influence of Peptide Composition, Gas-Phase Basicity, and Chemical Modification on Fragmentation Efficiency: Evidence for the Mobile Proton Model. J. Am. Soc. Mass Spectrom. 1996, 118:8365-8374.
10. Zubarev R.A., Kelleher N.L., McLafferty F.W. Electron Capture Dissociation of Multiply Charged Protein Cations. A Nonergodic Process. J. Am. Chem. Soc. 1998, 120:3265-3266.
11. Mikesh L.M., Ueberheide B., Chi A., Coon J.J., Syka J.E.P., Shabanowitz J., Hunt D.F. The Utility of ETD Mass Spectrometry in Proteomic Analysis. BBA-Proteins Proteom 2006, 1764:1811-1822.
12. Syka J.E.P., Coon J.J., Schroeder M.J., Shabanowitz J., Hunt D.F. Peptide and Protein Sequence Analysis by Electron Transfer Dissociation Mass Spectrometry. Proc. Natl. Acad. Sci. U.S.A. 2004, 101:9528-9533.
13. Coon J.J., Shabanowitz J., Hunt D.F., Syka J.E.P. Electron Transfer Dissociation of Peptide Anions. J. Am. Soc. Mass Spectrom. 2005, 16:880-882.
14. Kjeldsen F., Silivra O.A., Ivonin I.A., Haselmann K.F., Gorshkov M., Zubarev R.A. Calphabond C Backbone Fragmentation Dominates in Electron Detachment Dissociation of Gas-Phase Polypeptide Polyanions. Chem. Eur. J. 2005, 11:1803-1812.
15. Budnik B., Haselmann K., Zubarev R. Electron Detachment Dissociation of Peptide Dianions: An Electron-Hole Recombination Phenomenon. Chem. Phys. Lett. 2001, 342:299-302.
16. Haselmann K.F., Budnik B.A., Kjeldsen F., Nielsen M.L., Olsen J.V., Zubarev R.A. Electronic Excitation Gives Informative Fragmentation of Polypeptide Cations and Anions. Eur. J. Mass Spectrom. 2002, 8:117-121.
17. Polfer, N.; Huzarska, M.; Kaplan, D.; Easterling, M. Proceedings of the 57th ASMS Conference on Mass Spectrometry and Allied Topics; Philadelphia, PA, May, 2009.
18. Anusiewicz I., Jasionowski M., Skurski P., Simons J. Backbone and Side-Chain Cleavages in Electron Detachment Dissociation (EDD). J. Phys. Chem. A 2005, 109:11332-11337.
19. Gabelica V., Tabarin T., Antoine R., Rosu F., Compagnon I., Broyer M., De Pauw E., Dugourd P. Electron Photodetachment Dissociation of DNA Polyanions in a Quadrupole Ion Trap Mass Spectrometer. Anal. Chem. 2006, 78:6564-6572.
20. Antoine R., Joly L., Tabarin T., Broyer M., Dugourd P., Lemoine J. Photo-Induced Formation of Radical Anion Peptides. Electron Photodetachment Dissociation Experiments. Rapid Commun. Mass Spectrom. 2007, 21:265-268.
21. Larraillet V., Antoine R., Dugourd P., Lemoine J. Activated-Electron Photodetachment Dissociation for the Structural Characterization of Protein Polyanions. Anal. Chem. 2009, 81:8410-8416.
22. Joly L., Antoine R., Broyer M., Lemoine J., Dugourd P. Electron Photodetachment from Gas Phase Peptide Dianions. Relation with Optical Absorption Properties. J. Phys. Chem. A 2008, 112:898-903.
23. Tsybin Y.O., Hendrickson C.L., Beu S.C., Marshall A.G. Impact of Ion Magnetron Motion on Electron Capture Dissociation Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. Int. J. Mass Spectrom 2006, 255/256:144-149. (Diethard Bohme Honor Issue).
24. Matheis K., Joly L., Antoine R., Lepine F., Bordas C., Ehrler O.T., Allouche A.-R., Kappes M.M., Dugourd P. Photoelectron Spectroscopy of Gramicidin Polyanions: Competition Between Delayed and Direct Emission. J. Am. Chem. Soc. 2008, 130:15903-15906.
25. Kweon H.K., Hakansson K. Metal Oxide-Based Enrichment Combined with Gas-Phase Ion-Electron Reactions for Improved Mass Spectrometric Characterization of Protein Phosphorylation. J. Proteome Res. 2008, 7:749-755.
26. Ben-Hamidane H., He H., Tsybin O.Y., Emmett M.R., Hendrickson C.L., Marshall A.G., Tsybin Y.O. Periodic Sequence Distribution of Product Ion Abundances in Electron Capture Dissociation of Amphipathic Peptides and Proteins. J. Am. Soc. Mass Spectrom. 2009, 20:1182-1192.
27. Joly L., Antoine R., Allouche A.R., Broyer M., Lemoine J., Dugourd P. Optical Properties of Isolated Hormone Oxytocin Dianions: Ionization, Reduction, and Copper Complexation Effects. J. Phys. Chem. A 2009, 113:6607-6611.
28. Joly L., Antoine R., Albrieux F., Ballivian R., Broyer M., Chirot F., Lemoine J., Dugourd P., Greco C., Mitric R., Bonacic-Koutecky V. Optical and Structural Properties of Copper-Oxytocin Dications in the Gas Phase. J. Phys. Chem. B 2009, 113:11293-11300.
29. - Parent Anions of Underivatized Peptides: An Aid to Structure Determination and Some Unusual Negative Ion Cleavages. Mass Spectrom. Rev. 2002, 21:87-107.
30. Joly L., Antoine R., Allouche A.-R., Dugourd P. Formation and Spectroscopy of a Tryptophan Radical Containing Peptide in the Gas Phase. J. Am. Chem. Soc. 2008, 130:13832-13833.
31. Kovacs F.A., Denny J.K., Song Z., Quine J.R., Cross T.A. Helix Tilt of the M2 Transmembrane Peptide from Influenza A Virus: An Intrinsic Property. J. Mol. Biol. 2000, 295:117-125.
32. Tsybin, Y. O.; Ben-Hamidane, H.; Vorobyev, A.; Schmid, A.; Tsybin, O. Y.; Corminbeuf, C.; Pouthier, V. Proceedings of the 56th ASMS Conference on Mass Spectrometry and Allied Topics, Denver, June, 2008.
33. Turecek F., Yao C., Fung Y.M.E., Hayakawa S., Hashimoto M., Matsubara H. Histidine-Containing Radicals in the Gas Phase. J. Phys. Chem. B 2009, 113:7347-7366.
34. Liu Z., Julian R.R. Deciphering the Peptide Iodination Code. J. Am. Soc. Mass Spectrom. 2009, 20:965-971.
35. Yi M., Cross T.A., Zhou H.X. Conformational Heterogeneity of the M2 Proton Channel and a Structural Model for Channel Activation. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:13311-13316.
36. Witter R., Nozirov R., Sternberg U., Cross T.A., Ulrich A.S., Fu R. Solid-State 19F NMR Spectroscopy Reveals that trp41 Participates in the Gating Mechanism of the M2 Proton Channel of Influenza 1 Virus. J. Am. Chem. Soc 2008, 130:918-924.
37. Pouthier V., Tsybin Y.O. Amide-I Relaxation-Induced Hydrogen Bond Distortion: An Intermediate in Electron Capture Dissociation Mass Spectrometry of α-helical Peptides?. J. Chem. Phys. 2008, 129:095106.