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Volumn 104, Issue 4, 2010, Pages 341-350

Different scales of Ty1/copia-like retrotransposon proliferation in the genomes of three diploid hybrid sunflower species

Author keywords

Genome evolution; Hybridization; Transposable elements; Ty1 copia

Indexed keywords

DICOTYLEDON; ENVIRONMENTAL CONDITIONS; EVOLUTIONARY BIOLOGY; GENOME; HETEROGENEITY; HYBRID; MUTATION;

EID: 77950091162     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2009.182     Document Type: Article
Times cited : (39)

References (56)
  • 1
    • 25144483942 scopus 로고    scopus 로고
    • Hybridization and genome size evolution: Timing and magnitude of nuclear DNA content increases in Helianthus homoploid hybrid species
    • Baack EJ, Whitney KD, Rieseberg LH (2005). Hybridization and genome size evolution: timing and magnitude of nuclear DNA content increases in Helianthus homoploid hybrid species. New Phytol 167: 623-630.
    • (2005) New Phytol , vol.167 , pp. 623-630
    • Baack, E.J.1    Whitney, K.D.2    Rieseberg, L.H.3
  • 2
    • 0029149631 scopus 로고
    • Mitochondrial portraits of human-populations using median networks
    • Bandelt HJ, Forster P, Sykes BC, Richards MB (1995). Mitochondrial portraits of human-populations using median networks. Genetics 141: 743-753.
    • (1995) Genetics , vol.141 , pp. 743-753
    • Bandelt, H.J.1    Forster, P.2    Sykes, B.C.3    Richards, M.B.4
  • 3
    • 0033976643 scopus 로고    scopus 로고
    • Transposable element contributions to plant gene and genome evolution
    • Bennetzen JL (2000). Transposable element contributions to plant gene and genome evolution. Plant Mol Biol 42: 251-269.
    • (2000) Plant Mol Biol , vol.42 , pp. 251-269
    • Bennetzen, J.L.1
  • 4
    • 0035997904 scopus 로고    scopus 로고
    • Transposable elements and the evolution of eukaryotic complexity
    • Bowen NJ, Jordan IK (2002). Transposable elements and the evolution of eukaryotic complexity. Curr Issues Mol Biol 4: 65-76.
    • (2002) Curr Issues Mol Biol , vol.4 , pp. 65-76
    • Bowen, N.J.1    Jordan, I.K.2
  • 5
    • 0031135337 scopus 로고    scopus 로고
    • Recombinant DNA sequences generated by PCR amplification
    • Bradley RD, Hillis DM (1997). Recombinant DNA sequences generated by PCR amplification. Mol Biol Evol 14: 592-593.
    • (1997) Mol Biol Evol , vol.14 , pp. 592-593
    • Bradley, R.D.1    Hillis, D.M.2
  • 6
    • 0033775615 scopus 로고    scopus 로고
    • Absolute quantification of mRNA using realtime reverse transcription polymerase chain reaction assays
    • Bustin SA (2000). Absolute quantification of mRNA using realtime reverse transcription polymerase chain reaction assays. J Mol Endocrinol 25: 169-193.
    • (2000) J Mol Endocrinol , vol.25 , pp. 169-193
    • Bustin, S.A.1
  • 7
    • 70350662567 scopus 로고    scopus 로고
    • HACRE1, a recently inserted copialike retrotransposon of sunflower (Helianthus annuus L.)
    • Buti M, Giordani T, Vukich M, Gentzbittel L, Pistelli L,Cattonaro F et al. (2009). HACRE1, a recently inserted copialike retrotransposon of sunflower (Helianthus annuus L.). Genome 52: 904-911.
    • (2009) Genome , vol.52 , pp. 904-911
    • Buti, M.1    Giordani, T.2    Vukich, M.3    Gentzbittel, L.4    Pistelli, L.5    Cattonaro, F.6
  • 9
    • 33244475858 scopus 로고    scopus 로고
    • The contribution of LTR retrotransposon sequences to gene evolution in Mus musculus
    • DeBarry JD, Ganko EW, McCarthy EM, McDonald JF (2006). The contribution of LTR retrotransposon sequences to gene evolution in Mus musculus. Mol Biol Evol 23: 479-481.
    • (2006) Mol Biol Evol , vol.23 , pp. 479-481
    • Debarry, J.D.1    Ganko, E.W.2    McCarthy, E.M.3    McDonald, J.F.4
  • 10
    • 42349096534 scopus 로고    scopus 로고
    • Opinion-transposable elements and the evolution of regulatory networks
    • Feschotte C (2008). Opinion-transposable elements and the evolution of regulatory networks. Nat Rev Genet 9: 397-405.
    • (2008) Nat Rev Genet , vol.9 , pp. 397-405
    • Feschotte, C.1
  • 11
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte C, Jiang N, Wessler SR (2002). Plant transposable elements: where genetics meets genomics. Nat Rev Genet 3: 329-341.
    • (2002) Nat Rev Genet , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 13
    • 0026695147 scopus 로고
    • A Ty1-copia group retrotransposon sequence in a vertebrate
    • Flavell AJ, Smith DB (1992). A Ty1-copia group retrotransposon sequence in a vertebrate. Mol Gen Genet 233: 322-326.
    • (1992) Mol Gen Genet , vol.233 , pp. 322-326
    • Flavell, A.J.1    Smith, D.B.2
  • 14
    • 0026516955 scopus 로고
    • Extreme heterogeneity of Ty1-copia group retrotransposons in plants
    • Flavell AJ, Smith DB, Kumar A (1992b). Extreme heterogeneity of Ty1-copia group retrotransposons in plants. Mol Gen Genet 231: 233-242.
    • (1992) Mol Gen Genet , vol.231 , pp. 233-242
    • Flavell, A.J.1    Smith, D.B.2    Kumar, A.3
  • 15
    • 0032080772 scopus 로고    scopus 로고
    • Activation of plant retrotransposons under stress conditions
    • Grandbastien MA (1998). Activation of plant retrotransposons under stress conditions. Trends Plant Sci 3: 181-187.
    • (1998) Trends Plant Sci , vol.3 , pp. 181-187
    • Grandbastien, M.A.1
  • 17
    • 33749389724 scopus 로고    scopus 로고
    • Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
    • Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF (2006). Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Res 16: 1252-1261.
    • (2006) Genome Res , vol.16 , pp. 1252-1261
    • Hawkins, J.S.1    Kim, H.2    Nason, J.D.3    Wing, R.A.4    Wendel, J.F.5
  • 18
    • 1942421723 scopus 로고    scopus 로고
    • Large retrotransposon derivatives: Abundant, conserved but nonautonomous retroelements of barley and related genomes
    • Kalendar R, Vicient CM, Peleg O, Anamthawat-Jonsson K, Bolshoy A, Schulman AH (2004). Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes. Genetics 166: 1437-1450.
    • (2004) Genetics , vol.166 , pp. 1437-1450
    • Kalendar, R.1    Vicient, C.M.2    Peleg, O.3    Anamthawat-Jonsson, K.4    Bolshoy, A.5    Schulman, A.H.6
  • 19
    • 0030860770 scopus 로고    scopus 로고
    • Transposable elements as sources of variation in animals and plants
    • Kidwell MG, Lisch D (1997). Transposable elements as sources of variation in animals and plants. Proc Natl Acad Sci USA 94: 7704-7711.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 7704-7711
    • Kidwell, M.G.1    Lisch, D.2
  • 21
    • 0032971565 scopus 로고    scopus 로고
    • Interspecific hybridization increases transposition rates of Osvaldo
    • Labrador M, Farre M, Utzet F, Fontdevila A (1999). Interspecific hybridization increases transposition rates of Osvaldo. Mol Biol Evol 16: 931-937.
    • (1999) Mol Biol Evol , vol.16 , pp. 931-937
    • Labrador, M.1    Farre, M.2    Utzet, F.3    Fontdevila, A.4
  • 22
    • 26444444258 scopus 로고    scopus 로고
    • Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species
    • Lai Z, Nakazato T, Salmaso M, Burke JM, Tang S, Knapp SJ et al. (2005). Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species. Genetics 171: 291-303.
    • (2005) Genetics , vol.171 , pp. 291-303
    • Lai, Z.1    Nakazato, T.2    Salmaso, M.3    Burke, J.M.4    Tang, S.5    Knapp, S.J.6
  • 23
    • 0033645667 scopus 로고    scopus 로고
    • Retrotransposon activation followed by rapid repression in introgressed rice plants
    • Liu B, Wendel JF (2000). Retrotransposon activation followed by rapid repression in introgressed rice plants. Genome 43: 874-880.
    • (2000) Genome , vol.43 , pp. 874-880
    • Liu, B.1    Wendel, J.F.2
  • 24
    • 0343090765 scopus 로고    scopus 로고
    • Ty3/Gypsy retrotransposons: Description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic data
    • Marin I, Llorens C (2000). Ty3/Gypsy retrotransposons: description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic data. Mol Biol Evol 17: 1040-1049.
    • (2000) Mol Biol Evol , vol.17 , pp. 1040-1049
    • Marin, I.1    Llorens, C.2
  • 25
    • 0021715393 scopus 로고
    • The significance of responses of the genome to challenge
    • McClintock B (1984). The significance of responses of the genome to challenge. Science 226: 792-801.
    • (1984) Science , vol.226 , pp. 792-801
    • McClintock, B.1
  • 26
    • 0029168410 scopus 로고
    • Transposable elements: Possible catalysts of organismic evolution
    • McDonald JF (1995). Transposable elements: possible catalysts of organismic evolution. Trends Ecol Evol 10: 123-126.
    • (1995) Trends Ecol Evol , vol.10 , pp. 123-126
    • McDonald, J.F.1
  • 28
    • 0033288496 scopus 로고    scopus 로고
    • Molecular domestication-more than a sporadic episode in evolution
    • Miller WJ, McDonald JF, Nouaud D, Anxolabehere D (1999). Molecular domestication-more than a sporadic episode in evolution. Genetica 107: 197-207.
    • (1999) Genetica , vol.107 , pp. 197-207
    • Miller, W.J.1    McDonald, J.F.2    Nouaud, D.3    Anxolabehere, D.4
  • 29
    • 0036854310 scopus 로고    scopus 로고
    • Genes of the Pseudoviridae (Ty1/copia retrotransposons)
    • Peterson-Burch BD, Voytas DF (2002). Genes of the Pseudoviridae (Ty1/copia retrotransposons).Mol Biol Evol 19: 1832-1845.
    • (2002) Mol Biol Evol , vol.19 , pp. 1832-1845
    • Peterson-Burch, B.D.1    Voytas, D.F.2
  • 30
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 31
    • 0035139147 scopus 로고    scopus 로고
    • Intraspecific gene genealogies: Trees grafting into networks
    • Posada D, Crandall KA (2001). Intraspecific gene genealogies: trees grafting into networks. Trends Ecol Evol 16: 37-45.
    • (2001) Trends Ecol Evol , vol.16 , pp. 37-45
    • Posada, D.1    Crandall, K.A.2
  • 32
    • 0031465850 scopus 로고    scopus 로고
    • Hybrid origins of plant species
    • Rieseberg LH (1997). Hybrid origins of plant species. Ann Rev Ecol Syst 28: 359-389.
    • (1997) Ann Rev Ecol Syst , vol.28 , pp. 359-389
    • Rieseberg, L.H.1
  • 34
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-Delbarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 35
    • 33845190150 scopus 로고    scopus 로고
    • Parasitism and the retrotransposon life cycle in plants: A hitchhiker's guide to the genome
    • Sabot F, Schulman AH (2006). Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome. Heredity 97: 381-388.
    • (2006) Heredity , vol.97 , pp. 381-388
    • Sabot, F.1    Schulman, A.H.2
  • 37
    • 0000167671 scopus 로고
    • Nuclear DNA content variation in Helianthus (Asteraceae)
    • Sims LE, Price HJ (1985). Nuclear DNA content variation in Helianthus (Asteraceae). Am J Bot 72: 1213-1219.
    • (1985) Am J Bot , vol.72 , pp. 1213-1219
    • Sims, L.E.1    Price, H.J.2
  • 38
    • 70349706091 scopus 로고    scopus 로고
    • The genomic organization of Ty3/gypsy-like retrotransposons in Helianthus (Asteraceae) homoploid hybrid species
    • Staton ES, Ungerer MC, Moore RC (2009). The genomic organization of Ty3/gypsy-like retrotransposons in Helianthus (Asteraceae) homoploid hybrid species. Am J Bot 96: 1646-1655.
    • (2009) Am J Bot , vol.96 , pp. 1646-1655
    • Staton, E.S.1    Ungerer, M.C.2    Moore, R.C.3
  • 39
    • 0032033103 scopus 로고    scopus 로고
    • Gypsy-like retrotransposons are widespread in the plant kingdom
    • Suoniemi A, Tanskanen J, Schulman AH (1998). Gypsy-like retrotransposons are widespread in the plant kingdom. Plant J 13: 699-705.
    • (1998) Plant J , vol.13 , pp. 699-705
    • Suoniemi, A.1    Tanskanen, J.2    Schulman, A.H.3
  • 41
    • 0033136093 scopus 로고    scopus 로고
    • A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors
    • Takeda S, Sugimoto K, Otsuki H, Hirochika H (1999). A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors. Plant J 18: 383-393.
    • (1999) Plant J , vol.18 , pp. 383-393
    • Takeda, S.1    Sugimoto, K.2    Otsuki, H.3    Hirochika, H.4
  • 42
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) Software Version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 43
    • 33644665000 scopus 로고    scopus 로고
    • Involvement of ethylene in stressinduced expression of the TLC1.1 retrotransposon from Lycopersicon chilense Dun
    • Tapia G, Verdugo I, Yanez M, Ahumada I, Theoduloz C, Cordero C et al. (2005). Involvement of ethylene in stressinduced expression of the TLC1.1 retrotransposon from Lycopersicon chilense Dun. Plant Physiol 138: 2075-2086.
    • (2005) Plant Physiol , vol.138 , pp. 2075-2086
    • Tapia, G.1    Verdugo, I.2    Yanez, M.3    Ahumada, I.4    Theoduloz, C.5    Cordero, C.6
  • 44
    • 0027968068 scopus 로고
    • Clustal-W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994). Clustal-W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 45
    • 68249158010 scopus 로고    scopus 로고
    • Proliferation of Ty3/ gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data
    • Ungerer M, Strakosh S, Stimpson K (2009). Proliferation of Ty3/ gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data. BMC Biol 7: 40.
    • (2009) BMC Biol , vol.7 , pp. 40
    • Ungerer, M.1    Strakosh, S.2    Stimpson, K.3
  • 46
    • 33750018038 scopus 로고    scopus 로고
    • Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation
    • Ungerer MC, Strakosh SC, Zhen Y (2006). Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation. Curr Biol 16: R872-R873.
    • (2006) Curr Biol , vol.16
    • Ungerer, M.C.1    Strakosh, S.C.2    Zhen, Y.3
  • 47
    • 0141561907 scopus 로고    scopus 로고
    • Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
    • van de Lagemaat LN, Landry JR, Mager DL, Medstrand P (2003). Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions. Trends Genet 19: 530-536.
    • (2003) Trends Genet , vol.19 , pp. 530-536
    • Van De Lagemaat, L.N.1    Landry, J.R.2    Mager, D.L.3    Medstrand, P.4
  • 49
    • 12044254346 scopus 로고
    • Surveys of gene families using polymerase chainreaction- PCR selection and PCR drift
    • Wagner A, Blackstone N, Cartwright P, Dick M, Misof B, Snow P et al. (1994). Surveys of gene families using polymerase chainreaction- PCR selection and PCR drift. Syst Biol 43: 250-261.
    • (1994) Syst Biol , vol.43 , pp. 250-261
    • Wagner, A.1    Blackstone, N.2    Cartwright, P.3    Dick, M.4    Misof, B.5    Snow, P.6
  • 50
    • 0009673698 scopus 로고    scopus 로고
    • Undermethylation associated with retroelement activation and chromosomal remodelling in an interspecific mammalian hybrid
    • Waugh O'Neill RJ, O'Neill MJ, Marshall Graves JA (1998). Undermethylation associated with retroelement activation and chromosomal remodelling in an interspecific mammalian hybrid. Nature 393: 68-72.
    • (1998) Nature , vol.393 , pp. 68-72
    • Waugh O'neill, R.J.1    O'neill, M.J.2    Marshall Graves, J.A.3
  • 51
    • 0030207150 scopus 로고    scopus 로고
    • Turned on by stress. Plant retrotransposons
    • Wessler SR (1996). Turned on by stress. Plant retrotransposons. Curr Biol 6: 959-961.
    • (1996) Curr Biol , vol.6 , pp. 959-961
    • Wessler, S.R.1
  • 53
    • 0035923510 scopus 로고    scopus 로고
    • Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes
    • Witte CP, Le QH, Bureau T, Kumar A (2001). Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. Proc Natl Acad Sci USA 98: 13778-13783.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 13778-13783
    • Witte, C.P.1    Le, Q.H.2    Bureau, T.3    Kumar, A.4
  • 54
    • 0025006614 scopus 로고
    • Origin and evolution of retroelements based upon their reverse-transcriptase sequences
    • Xiong Y, Eickbush TH (1990). Origin and evolution of retroelements based upon their reverse-transcriptase sequences. EMBO J 9: 3353-3362.
    • (1990) EMBO J , vol.9 , pp. 3353-3362
    • Xiong, Y.1    Eickbush, T.H.2
  • 55
    • 0030060446 scopus 로고    scopus 로고
    • Long polymerase chain reaction amplification of heterogeneous HIV type 1 templates produces recombination at a relatively high frequency
    • Yang YL, Wang GQ, Dorman K, Kaplan AH (1996). Long polymerase chain reaction amplification of heterogeneous HIV type 1 templates produces recombination at a relatively high frequency. Aids Res Hum Retrov 12: 303-306.
    • (1996) Aids Res Hum Retrov , vol.12 , pp. 303-306
    • Yang, Y.L.1    Wang, G.Q.2    Dorman, K.3    Kaplan, A.H.4
  • 56
    • 1842681942 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
    • Zhang X, Wessler SR (2004). Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea. Proc Natl Acad Sci USA 101: 5589-5594.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 5589-5594
    • Zhang, X.1    Wessler, S.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.